Wall clock time and date at job start Mon Mar 30 2020 02:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39878 * 125.89453 * 2 1 4 4 C 1.35316 * 107.91777 * 180.14411 * 3 2 1 5 5 C 1.50695 * 126.12545 * 179.90295 * 4 3 2 6 6 N 1.34946 * 107.74727 * 359.64046 * 4 3 2 7 7 C 1.46495 * 126.03831 * 180.21044 * 6 4 3 8 8 C 1.52994 * 109.47372 * 89.99721 * 7 6 4 9 9 C 1.50702 * 109.47382 * 179.97438 * 8 7 6 10 10 O 1.21295 * 119.99937 * 359.97438 * 9 8 7 11 11 N 1.34767 * 120.00347 * 179.97438 * 9 8 7 12 12 C 1.37107 * 120.00367 * 180.02562 * 11 9 8 13 13 H 1.07998 * 119.99699 * 140.10358 * 12 11 9 14 14 C 1.38943 * 119.99435 * 320.10399 * 12 11 9 15 15 N 1.31417 * 119.99634 * 161.98499 * 14 12 11 16 16 Si 1.86800 * 120.00509 * 341.98117 * 14 12 11 17 17 H 1.48499 * 109.47055 * 93.80118 * 16 14 12 18 18 H 1.48501 * 109.47541 * 213.80408 * 16 14 12 19 19 H 1.48500 * 109.47013 * 333.80265 * 16 14 12 20 20 C 1.46505 * 120.00063 * 0.02562 * 11 9 8 21 21 C 1.52994 * 117.50017 * 182.28939 * 20 11 9 22 22 C 1.52995 * 117.49950 * 113.66498 * 20 11 9 23 23 N 1.30835 * 125.90223 * 179.74022 * 2 1 3 24 24 H 1.08996 * 109.46895 * 270.23498 * 1 2 3 25 25 H 1.08997 * 109.47602 * 30.23852 * 1 2 3 26 26 H 1.09007 * 109.46872 * 150.23815 * 1 2 3 27 27 H 1.07999 * 126.03981 * 0.02562 * 3 2 1 28 28 H 1.09002 * 109.47368 * 269.69224 * 5 4 3 29 29 H 1.08998 * 109.47149 * 149.68861 * 5 4 3 30 30 H 1.09004 * 109.47228 * 29.68834 * 5 4 3 31 31 H 1.09001 * 109.47030 * 209.99886 * 7 6 4 32 32 H 1.09000 * 109.47151 * 329.99424 * 7 6 4 33 33 H 1.09001 * 109.47178 * 300.00074 * 8 7 6 34 34 H 1.08998 * 109.47347 * 60.00522 * 8 7 6 35 35 H 0.97005 * 119.99347 * 179.97438 * 15 14 12 36 36 H 1.09001 * 115.54685 * 327.99643 * 20 11 9 37 37 H 1.08998 * 117.50246 * 359.97438 * 21 20 11 38 38 H 1.09002 * 117.50101 * 145.01842 * 21 20 11 39 39 H 1.08995 * 117.50113 * 214.98103 * 22 20 11 40 40 H 1.09002 * 117.50261 * 359.97438 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1331 0.0000 4 6 3.6142 0.7155 -0.0032 5 6 4.8349 1.5991 -0.0065 6 7 3.6088 -0.6339 0.0028 7 6 4.7900 -1.5005 0.0064 8 6 5.2017 -1.7957 1.4500 9 6 6.4164 -2.6876 1.4537 10 8 6.9045 -3.0519 0.4047 11 7 6.9604 -3.0806 2.6224 12 6 8.0658 -3.8917 2.6257 13 1 8.8564 -3.7240 3.3421 14 6 8.1687 -4.9294 1.7075 15 7 9.3383 -5.4761 1.4623 16 14 6.6447 -5.5474 0.8215 17 1 6.5112 -4.8469 -0.4811 18 1 6.7665 -7.0088 0.5876 19 1 5.4448 -5.2776 1.6538 20 6 6.3705 -2.6412 3.8894 21 6 7.0654 -3.0770 5.1809 22 6 5.7313 -3.7092 4.7791 23 7 2.2743 -1.0598 0.0048 24 1 -0.3633 0.0042 1.0276 25 1 -0.3634 0.8878 -0.5175 26 1 -0.3633 -0.8922 -0.5102 27 1 1.9922 2.1599 0.0004 28 1 5.1299 1.8076 -1.0349 29 1 5.6508 1.0936 0.5101 30 1 4.6071 2.5354 0.5030 31 1 4.5563 -2.4353 -0.5031 32 1 5.6092 -1.0002 -0.5100 33 1 5.4354 -0.8608 1.9596 34 1 4.3826 -2.2960 1.9664 35 1 9.4101 -6.2008 0.8215 36 1 5.9071 -1.6547 3.8751 37 1 7.9612 -3.6911 5.0880 38 1 7.0593 -2.3772 6.0166 39 1 4.8476 -3.4253 5.3504 40 1 5.7492 -4.7388 4.4216 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068230881.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:27 Heat of formation + Delta-G solvation = 54.313986 kcal Electronic energy + Delta-G solvation = -21842.477191 eV Core-core repulsion = 18659.506832 eV Total energy + Delta-G solvation = -3182.970359 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.26807 -41.06414 -38.23118 -35.85425 -34.92195 -33.58533 -33.21954 -31.82766 -29.15576 -27.87744 -26.97076 -24.63979 -23.36375 -22.93760 -21.36454 -21.08577 -20.16570 -19.10780 -18.11458 -17.51508 -17.10889 -16.63353 -16.29345 -15.77260 -15.41860 -15.10444 -14.87707 -14.67424 -14.54634 -14.14076 -14.03496 -13.83668 -13.76736 -13.51472 -13.21316 -12.97477 -12.82079 -12.65625 -12.53960 -12.30571 -12.23729 -12.04926 -11.66362 -11.41456 -11.27631 -10.76791 -10.54769 -10.04737 -9.49494 -9.42114 -8.46476 -6.21162 0.91132 1.14552 1.27943 1.43815 1.46689 1.81489 1.86441 2.36901 2.58348 2.90470 3.16784 3.51322 3.67679 3.71237 3.83770 3.97598 4.02958 4.12025 4.17860 4.26180 4.31047 4.55388 4.58404 4.65146 4.72343 4.81812 4.83424 4.85467 4.92565 4.97460 5.06159 5.12363 5.17795 5.37077 5.40504 5.64434 5.78361 5.82083 6.11572 6.65480 6.80647 6.83603 7.26920 7.75137 8.60566 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020256 B = 0.005242 C = 0.004942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.001588 B = 5340.351986 C = 5664.806651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.061 3.939 3 C -0.284 4.284 4 C 0.082 3.918 5 C -0.095 4.095 6 N -0.379 5.379 7 C 0.156 3.844 8 C -0.127 4.127 9 C 0.445 3.555 10 O -0.584 6.584 11 N -0.445 5.445 12 C -0.338 4.338 13 H 0.078 0.922 14 C 0.045 3.955 15 N -0.908 5.908 16 Si 0.966 3.034 17 H -0.269 1.269 18 H -0.314 1.314 19 H -0.276 1.276 20 C 0.040 3.960 21 C -0.162 4.162 22 C -0.189 4.189 23 N -0.348 5.348 24 H 0.087 0.913 25 H 0.100 0.900 26 H 0.065 0.935 27 H 0.173 0.827 28 H 0.090 0.910 29 H 0.070 0.930 30 H 0.111 0.889 31 H 0.072 0.928 32 H 0.108 0.892 33 H 0.119 0.881 34 H 0.092 0.908 35 H 0.273 0.727 36 H 0.151 0.849 37 H 0.078 0.922 38 H 0.131 0.869 39 H 0.129 0.871 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.448 16.132 2.481 22.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.104 4.104 3 C -0.312 4.312 4 C -0.044 4.044 5 C -0.153 4.153 6 N -0.161 5.161 7 C 0.034 3.966 8 C -0.168 4.168 9 C 0.236 3.764 10 O -0.471 6.471 11 N -0.165 5.165 12 C -0.465 4.465 13 H 0.096 0.904 14 C -0.160 4.160 15 N -0.546 5.546 16 Si 0.799 3.201 17 H -0.196 1.196 18 H -0.245 1.245 19 H -0.202 1.202 20 C -0.064 4.064 21 C -0.199 4.199 22 C -0.227 4.227 23 N -0.171 5.171 24 H 0.106 0.894 25 H 0.118 0.882 26 H 0.084 0.916 27 H 0.190 0.810 28 H 0.108 0.892 29 H 0.089 0.911 30 H 0.130 0.870 31 H 0.090 0.910 32 H 0.126 0.874 33 H 0.137 0.863 34 H 0.110 0.890 35 H 0.082 0.918 36 H 0.168 0.832 37 H 0.096 0.904 38 H 0.149 0.851 39 H 0.147 0.853 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -14.912 14.478 1.912 20.872 hybrid contribution 0.076 -0.376 -0.567 0.684 sum -14.837 14.102 1.345 20.513 Atomic orbital electron populations 1.20285 0.84495 1.04027 1.03870 1.23009 0.98459 0.90731 0.98239 1.21460 0.90474 1.00578 1.18706 1.21802 0.98973 0.84042 0.99631 1.20630 0.91735 0.98471 1.04442 1.48641 1.04771 1.04884 1.57784 1.21198 0.83904 0.94646 0.96830 1.21768 0.95801 1.01056 0.98161 1.20810 0.87685 0.83835 0.84026 1.90504 1.65262 1.59105 1.32217 1.43306 1.25838 1.43294 1.04019 1.18727 0.96986 1.10348 1.20423 0.90444 1.25881 0.98502 0.95255 0.96337 1.69805 1.24866 1.25704 1.34223 0.85469 0.80227 0.73659 0.80753 1.19614 1.24515 1.20175 1.22257 1.03150 0.98606 0.82367 1.23162 0.96235 1.03727 0.96822 1.23309 0.97754 0.97891 1.03772 1.77321 0.87265 1.24760 1.27735 0.89430 0.88151 0.91568 0.80956 0.89195 0.91133 0.87043 0.90977 0.87400 0.86278 0.88969 0.91805 0.83207 0.90371 0.85082 0.85301 0.91682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.14 10.45 71.24 0.74 -0.40 16 2 C 0.06 1.57 7.22 43.11 0.31 1.88 16 3 C -0.28 -6.29 10.65 21.99 0.23 -6.06 16 4 C 0.08 1.99 6.93 41.40 0.29 2.28 16 5 C -0.09 -1.57 9.90 71.23 0.71 -0.86 16 6 N -0.38 -11.59 3.61 -334.72 -1.21 -12.80 16 7 C 0.16 5.21 5.35 86.38 0.46 5.67 16 8 C -0.13 -4.24 4.65 29.85 0.14 -4.10 16 9 C 0.44 20.18 5.87 87.66 0.51 20.69 16 10 O -0.58 -31.42 10.83 -3.08 -0.03 -31.45 16 11 N -0.45 -20.61 2.56 -613.14 -1.57 -22.18 16 12 C -0.34 -18.97 8.77 84.04 0.74 -18.24 16 13 H 0.08 4.59 6.96 -2.91 -0.02 4.57 16 14 C 0.04 2.68 4.90 84.92 0.42 3.09 16 15 N -0.91 -57.19 13.96 21.66 0.30 -56.89 16 16 Si 0.97 52.69 24.53 68.60 1.68 54.37 16 17 H -0.27 -15.33 6.10 99.48 0.61 -14.72 16 18 H -0.31 -16.87 7.11 99.48 0.71 -16.17 16 19 H -0.28 -14.40 7.11 99.48 0.71 -13.69 16 20 C 0.04 1.38 5.85 44.99 0.26 1.65 16 21 C -0.16 -5.09 9.79 30.59 0.30 -4.79 16 22 C -0.19 -5.96 10.37 30.59 0.32 -5.64 16 23 N -0.35 -11.41 12.58 -47.38 -0.60 -12.00 16 24 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 27 H 0.17 2.65 8.06 -2.91 -0.02 2.62 16 28 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.07 1.24 7.72 -2.39 -0.02 1.22 16 30 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.07 2.78 8.10 -2.39 -0.02 2.76 16 32 H 0.11 3.39 7.62 -2.39 -0.02 3.38 16 33 H 0.12 3.18 7.57 -2.39 -0.02 3.16 16 34 H 0.09 3.08 8.11 -2.39 -0.02 3.06 16 35 H 0.27 16.32 8.31 -92.70 -0.77 15.55 16 36 H 0.15 3.92 6.99 -2.39 -0.02 3.90 16 37 H 0.08 3.02 6.49 -2.39 -0.02 3.00 16 38 H 0.13 3.00 8.14 -2.39 -0.02 2.98 16 39 H 0.13 3.01 8.14 -2.39 -0.02 2.99 16 40 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -77.61 330.14 4.94 -72.67 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: 0.93 Total: 13.10 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: 5.43 Total: -4.83 kcal Atomic # 7 Polarization: -100.79 SS G_CDS: -3.07 Total: -103.86 kcal Atomic # 8 Polarization: -31.42 SS G_CDS: -0.03 Total: -31.45 kcal Atomic # 14 Polarization: 52.69 SS G_CDS: 1.68 Total: 54.37 kcal Total: -77.61 4.94 -72.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068230881.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.985 kcal (2) G-P(sol) polarization free energy of solvation -77.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds