Wall clock time and date at job start Mon Mar 30 2020 02:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35353 * 126.38151 * 2 1 4 4 C 1.41545 * 105.50541 * 180.14668 * 3 2 1 5 5 C 1.47606 * 126.52875 * 179.84659 * 4 3 2 6 6 O 1.21617 * 119.99461 * 7.34622 * 5 4 3 7 7 N 1.34770 * 120.00463 * 187.35033 * 5 4 3 8 8 C 1.36908 * 120.00343 * 186.19566 * 7 5 4 9 9 H 1.08000 * 120.00309 * 223.56505 * 8 7 5 10 10 C 1.39022 * 119.99876 * 43.56392 * 8 7 5 11 11 N 1.31380 * 120.00301 * 13.04493 * 10 8 7 12 12 Si 1.86806 * 120.00169 * 193.04380 * 10 8 7 13 13 H 1.48501 * 109.46969 * 0.02562 * 12 10 8 14 14 H 1.48491 * 109.47172 * 119.99821 * 12 10 8 15 15 H 1.48500 * 109.47057 * 240.00447 * 12 10 8 16 16 C 1.46495 * 119.99836 * 6.19228 * 7 5 4 17 17 C 1.55239 * 110.58314 * 241.66592 * 16 7 5 18 18 C 1.54886 * 102.58904 * 203.33974 * 17 16 7 19 19 C 1.54266 * 104.31279 * 37.93220 * 18 17 16 20 20 C 1.53873 * 106.59771 * 336.32152 * 19 18 17 21 21 N 1.31862 * 106.95087 * 359.58349 * 4 3 2 22 22 N 1.28472 * 110.06353 * 0.26233 * 21 4 3 23 23 C 1.46492 * 124.88260 * 179.97438 * 22 21 4 24 24 H 1.09006 * 109.46741 * 270.31816 * 1 2 3 25 25 H 1.08999 * 109.46835 * 30.31698 * 1 2 3 26 26 H 1.08998 * 109.47210 * 150.31718 * 1 2 3 27 27 H 1.08001 * 127.24866 * 0.02562 * 3 2 1 28 28 H 0.97001 * 120.00811 * 180.02562 * 11 10 8 29 29 H 1.09000 * 110.43627 * 4.25269 * 16 7 5 30 30 H 1.09001 * 110.89454 * 85.04916 * 17 16 7 31 31 H 1.08998 * 110.76929 * 321.57362 * 17 16 7 32 32 H 1.09003 * 110.48939 * 279.18686 * 18 17 16 33 33 H 1.09004 * 110.48775 * 156.67601 * 18 17 16 34 34 H 1.08997 * 110.02891 * 95.61113 * 19 18 17 35 35 H 1.08999 * 110.02869 * 216.98731 * 19 18 17 36 36 H 1.09003 * 110.02691 * 119.28415 * 20 19 18 37 37 H 1.08998 * 110.03201 * 240.66609 * 20 19 18 38 38 H 1.09006 * 109.47684 * 90.02193 * 23 22 21 39 39 H 1.09001 * 109.47329 * 210.02561 * 23 22 21 40 40 H 1.09005 * 109.46937 * 330.02586 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3098 1.0897 0.0000 4 6 3.6323 0.5853 -0.0035 5 6 4.8759 1.3805 -0.0080 6 8 4.8258 2.5882 0.1256 7 7 6.0668 0.7682 -0.1603 8 6 7.2262 1.4859 -0.0381 9 1 8.0298 1.3384 -0.7444 10 6 7.3692 2.4048 0.9953 11 7 6.5167 2.4071 1.9951 12 14 8.7734 3.6364 0.9626 13 1 9.5865 3.4275 -0.2623 14 1 8.2224 5.0153 0.9611 15 1 9.6272 3.4456 2.1625 16 6 6.1207 -0.6655 -0.4566 17 6 6.8575 -1.4296 0.6761 18 6 7.3454 -2.7115 -0.0433 19 6 7.7590 -2.2265 -1.4481 20 6 6.9802 -0.9256 -1.7109 21 7 3.5421 -0.7302 0.0039 22 7 2.3080 -1.0873 0.0060 23 6 1.8373 -2.4745 0.0132 24 1 -0.3633 0.0057 1.0277 25 1 -0.3633 0.8871 -0.5188 26 1 -0.3633 -0.8928 -0.5089 27 1 2.0054 2.1259 0.0004 28 1 6.6162 3.0484 2.7160 29 1 5.1154 -1.0638 -0.5938 30 1 6.1725 -1.6784 1.4866 31 1 7.7024 -0.8497 1.0474 32 1 6.5379 -3.4403 -0.1138 33 1 8.2005 -3.1403 0.4793 34 1 8.8311 -2.0319 -1.4753 35 1 7.4969 -2.9766 -2.1942 36 1 7.6746 -0.0997 -1.8656 37 1 6.3402 -1.0438 -2.5852 38 1 1.7204 -2.8133 1.0427 39 1 0.8779 -2.5354 -0.5005 40 1 2.5635 -3.1073 -0.4971 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078208661.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:42 Heat of formation + Delta-G solvation = 60.413734 kcal Electronic energy + Delta-G solvation = -22661.792546 eV Core-core repulsion = 19479.086691 eV Total energy + Delta-G solvation = -3182.705854 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.03242 -38.40373 -36.43293 -33.30133 -33.05051 -32.22771 -31.26597 -27.91125 -27.14416 -26.88394 -26.48750 -24.61554 -21.93981 -20.33532 -19.74454 -19.34220 -18.92930 -16.50640 -15.96516 -15.91785 -15.77012 -14.75894 -14.49170 -13.92275 -13.79546 -13.32227 -13.18263 -13.09048 -12.76788 -12.56539 -12.54840 -12.23392 -12.10400 -11.89957 -11.42608 -10.99564 -10.77650 -10.72820 -10.60883 -10.45823 -10.29830 -10.21666 -10.06770 -9.75667 -8.98627 -8.66261 -8.33387 -8.31208 -8.07489 -6.92515 -5.98321 -3.72481 2.35651 2.92114 2.96616 3.37912 3.45729 3.47818 4.38494 4.70351 4.88731 4.94626 5.07103 5.14111 5.21315 5.32687 5.39392 5.42975 5.52378 5.56198 5.62695 5.72757 5.84894 6.14868 6.17471 6.25565 6.31532 6.36908 6.40669 6.49696 6.57614 6.61738 6.68836 6.81027 6.99678 7.12603 7.17512 7.28041 7.59083 7.75485 8.40852 8.64089 9.20931 9.37127 9.79724 10.48177 11.09919 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016026 B = 0.007622 C = 0.005589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.715443 B = 3672.510158 C = 5008.371014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.005 4.005 3 C -0.191 4.191 4 C 0.032 3.968 5 C 0.550 3.450 6 O -0.533 6.533 7 N -0.431 5.431 8 C -0.331 4.331 9 H 0.081 0.919 10 C 0.063 3.937 11 N -0.831 5.831 12 Si 0.910 3.090 13 H -0.271 1.271 14 H -0.282 1.282 15 H -0.286 1.286 16 C 0.106 3.894 17 C -0.116 4.116 18 C -0.122 4.122 19 C -0.116 4.116 20 C -0.134 4.134 21 N -0.278 5.278 22 N -0.304 5.304 23 C 0.091 3.909 24 H 0.072 0.928 25 H 0.080 0.920 26 H 0.063 0.937 27 H 0.153 0.847 28 H 0.262 0.738 29 H 0.123 0.877 30 H 0.052 0.948 31 H 0.077 0.923 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.050 0.950 36 H 0.075 0.925 37 H 0.047 0.953 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.804 -11.515 -4.086 15.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.129 4.129 3 C -0.219 4.219 4 C -0.129 4.129 5 C 0.336 3.664 6 O -0.409 6.409 7 N -0.151 5.151 8 C -0.459 4.459 9 H 0.098 0.902 10 C -0.146 4.146 11 N -0.465 5.465 12 Si 0.738 3.262 13 H -0.196 1.196 14 H -0.208 1.208 15 H -0.213 1.213 16 C 0.000 4.000 17 C -0.155 4.155 18 C -0.160 4.160 19 C -0.154 4.154 20 C -0.173 4.173 21 N -0.112 5.112 22 N -0.091 5.091 23 C -0.050 4.050 24 H 0.090 0.910 25 H 0.099 0.901 26 H 0.082 0.918 27 H 0.170 0.830 28 H 0.073 0.927 29 H 0.140 0.860 30 H 0.071 0.929 31 H 0.096 0.904 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.094 0.906 37 H 0.066 0.934 38 H 0.095 0.905 39 H 0.104 0.896 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.287 -11.889 -3.837 14.991 hybrid contribution 0.205 1.156 0.232 1.196 sum -8.082 -10.733 -3.605 13.911 Atomic orbital electron populations 1.20246 0.87623 1.03023 1.02603 1.21225 0.94718 0.87334 1.09646 1.21477 0.91372 0.98948 1.10109 1.22915 0.96586 0.88952 1.04411 1.16701 0.80723 0.86078 0.82906 1.90595 1.85165 1.13439 1.51707 1.43056 1.04258 1.05151 1.62658 1.18950 0.93929 1.21706 1.11272 0.90152 1.25284 0.96871 0.98487 0.94009 1.69855 1.35274 1.33491 1.07857 0.86172 0.80952 0.81388 0.77722 1.19572 1.20761 1.21264 1.22757 1.00762 0.83865 0.92596 1.22680 1.00570 0.94656 0.97562 1.22281 0.99657 0.98000 0.96024 1.22020 0.99734 0.97025 0.96617 1.22453 0.99222 0.97440 0.98162 1.73503 0.99645 1.15570 1.22446 1.45446 1.03542 1.06564 1.53527 1.21948 1.00876 0.78556 1.03624 0.90975 0.90112 0.91842 0.82957 0.92734 0.86046 0.92883 0.90388 0.92682 0.92720 0.92459 0.93110 0.90644 0.93379 0.90518 0.89573 0.89057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 10.10 36.00 0.36 -0.42 16 2 C 0.00 -0.08 6.92 -82.20 -0.57 -0.65 16 3 C -0.19 -3.87 10.74 -39.35 -0.42 -4.29 16 4 C 0.03 0.77 6.82 -82.77 -0.56 0.20 16 5 C 0.55 15.48 6.77 -12.44 -0.08 15.40 16 6 O -0.53 -16.84 14.80 5.26 0.08 -16.76 16 7 N -0.43 -11.57 2.55 -106.92 -0.27 -11.84 16 8 C -0.33 -9.35 7.74 -14.99 -0.12 -9.47 16 9 H 0.08 2.19 6.40 -52.49 -0.34 1.85 16 10 C 0.06 1.84 4.56 -17.45 -0.08 1.76 16 11 N -0.83 -25.47 11.49 55.50 0.64 -24.83 16 12 Si 0.91 22.39 29.57 -169.99 -5.03 17.36 16 13 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 14 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 15 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 16 C 0.11 2.35 2.97 -66.09 -0.20 2.15 16 17 C -0.12 -2.42 6.48 -24.55 -0.16 -2.58 16 18 C -0.12 -1.99 6.82 -25.07 -0.17 -2.16 16 19 C -0.12 -1.87 6.80 -25.61 -0.17 -2.05 16 20 C -0.13 -2.61 6.41 -25.62 -0.16 -2.78 16 21 N -0.28 -5.70 8.40 33.41 0.28 -5.42 16 22 N -0.30 -4.91 3.70 -63.85 -0.24 -5.15 16 23 C 0.09 0.91 11.11 59.84 0.66 1.58 16 24 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.50 7.00 -51.93 -0.36 0.13 16 27 H 0.15 2.99 8.06 -52.49 -0.42 2.56 16 28 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 29 H 0.12 2.64 4.02 -89.10 -0.36 2.29 16 30 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.08 1.82 7.38 -51.93 -0.38 1.44 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 1.60 6.07 -51.93 -0.32 1.29 16 37 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.09 0.59 6.95 -51.93 -0.36 0.23 16 40 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 321.67 15.07 4.85 4.85 Total: -1.00 -35.88 321.67 -7.27 -43.15 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -5.90 Total: 1.95 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: -1.67 Total: -3.31 kcal Atomic # 7 Polarization: -47.65 SS G_CDS: 0.41 Total: -47.24 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: 0.08 Total: -16.76 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.03 Total: 17.36 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -35.88 -7.27 -43.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078208661.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.561 kcal (2) G-P(sol) polarization free energy of solvation -35.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds