Wall clock time and date at job start Mon Mar 30 2020 02:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30439 * 125.98101 * 2 1 4 4 N 1.39919 * 108.96619 * 179.97438 * 3 2 1 5 5 C 1.46504 * 125.74245 * 180.02562 * 4 3 2 6 6 C 1.34401 * 108.51554 * 359.74937 * 4 3 2 7 7 C 1.50699 * 126.31744 * 180.26697 * 6 4 3 8 8 C 1.38283 * 107.36303 * 0.39638 * 6 4 3 9 9 C 1.46969 * 126.44097 * 179.87025 * 8 6 4 10 10 C 1.35044 * 120.00051 * 241.27453 * 9 8 6 11 11 C 1.41831 * 119.99906 * 7.54873 * 10 9 8 12 12 O 1.21745 * 119.99989 * 6.19483 * 11 10 9 13 13 N 1.34772 * 120.00145 * 186.18932 * 11 10 9 14 14 C 1.46502 * 119.99850 * 0.02562 * 13 11 10 15 15 C 1.46501 * 120.00306 * 180.02562 * 13 11 10 16 16 C 1.50705 * 109.46976 * 270.00404 * 15 13 11 17 17 H 1.08001 * 119.99797 * 359.97438 * 16 15 13 18 18 C 1.37878 * 119.99814 * 180.02562 * 16 15 13 19 19 N 1.31514 * 119.99900 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99970 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46777 * 59.99741 * 20 18 16 22 22 H 1.48494 * 109.46962 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.46789 * 299.99989 * 20 18 16 24 24 H 1.08993 * 109.47327 * 275.30344 * 1 2 3 25 25 H 1.08997 * 109.47021 * 35.31017 * 1 2 3 26 26 H 1.09010 * 109.46595 * 155.30895 * 1 2 3 27 27 H 1.09004 * 109.46734 * 90.02573 * 5 4 3 28 28 H 1.09000 * 109.47367 * 210.02570 * 5 4 3 29 29 H 1.09000 * 109.47058 * 330.02881 * 5 4 3 30 30 H 1.09006 * 109.47053 * 270.14872 * 7 6 4 31 31 H 1.08999 * 109.46927 * 30.15279 * 7 6 4 32 32 H 1.08996 * 109.46893 * 150.15266 * 7 6 4 33 33 H 1.07998 * 119.99948 * 61.27791 * 9 8 6 34 34 H 1.07998 * 120.00357 * 187.55638 * 10 9 8 35 35 H 1.08997 * 109.47076 * 269.99455 * 14 13 11 36 36 H 1.08998 * 109.47398 * 29.99975 * 14 13 11 37 37 H 1.08997 * 109.47262 * 149.99770 * 14 13 11 38 38 H 1.08993 * 109.47089 * 29.99892 * 15 13 11 39 39 H 1.08998 * 109.47136 * 150.00161 * 15 13 11 40 40 H 0.97009 * 119.99546 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2734 1.0555 0.0000 4 7 3.6114 0.6461 0.0006 5 6 4.7776 1.5327 0.0013 6 6 3.6466 -0.6974 0.0065 7 6 4.8838 -1.5578 0.0149 8 6 2.3380 -1.1446 0.0006 9 6 1.8942 -2.5456 0.0012 10 6 1.1599 -3.0218 -1.0272 11 6 0.9519 -2.2222 -2.1801 12 8 1.5260 -1.1545 -2.2920 13 7 0.1187 -2.6444 -3.1516 14 6 -0.5726 -3.9290 -3.0167 15 6 -0.0958 -1.8187 -4.3427 16 6 -1.2536 -0.8841 -4.1041 17 1 -1.7776 -0.9035 -3.1599 18 6 -1.6447 -0.0050 -5.0917 19 7 -1.0069 0.0182 -6.2416 20 14 -3.0804 1.1531 -4.7963 21 1 -2.7793 2.0285 -3.6352 22 1 -3.2977 1.9900 -6.0036 23 1 -4.3050 0.3616 -4.5151 24 1 -0.3633 0.0950 1.0232 25 1 -0.3633 0.8386 -0.5940 26 1 -0.3633 -0.9338 -0.4293 27 1 5.0666 1.7520 1.0292 28 1 5.6056 1.0444 -0.5126 29 1 4.5284 2.4614 -0.5120 30 1 5.1874 -1.7675 -1.0108 31 1 5.6874 -1.0335 0.5318 32 1 4.6712 -2.4948 0.5296 33 1 2.1553 -3.1944 0.8242 34 1 0.7309 -4.0114 -0.9719 35 1 0.0403 -4.7187 -3.4511 36 1 -0.7433 -4.1406 -1.9612 37 1 -1.5290 -3.8834 -3.5374 38 1 0.8033 -1.2381 -4.5489 39 1 -0.3169 -2.4611 -5.1950 40 1 -1.2818 0.6370 -6.9363 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096400636.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:01 Heat of formation + Delta-G solvation = 68.402341 kcal Electronic energy + Delta-G solvation = -22158.856651 eV Core-core repulsion = 18976.497209 eV Total energy + Delta-G solvation = -3182.359442 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.84322 -38.87469 -34.92705 -33.87653 -33.14034 -32.48172 -30.87117 -29.07784 -27.93521 -26.63698 -25.70999 -25.12663 -23.43771 -21.36839 -19.56170 -19.01261 -17.58633 -16.67495 -16.38762 -15.87837 -15.34446 -14.93710 -14.32342 -14.16297 -13.72864 -13.54211 -13.31418 -13.04927 -12.83317 -12.63871 -12.46122 -12.30024 -12.06329 -12.02902 -11.81820 -11.59047 -11.51090 -11.39980 -11.07322 -10.82045 -10.46230 -10.11795 -10.05982 -9.55479 -9.23266 -8.76113 -8.56742 -8.34842 -7.44078 -7.35307 -5.95510 -3.99533 1.62529 2.30769 2.87307 3.32008 3.37009 3.41295 3.44791 4.21424 4.34355 4.54099 4.75220 4.86046 5.10010 5.21228 5.31688 5.35854 5.40247 5.46418 5.50997 5.54418 5.72091 5.79950 5.84626 5.94293 6.04868 6.06344 6.23763 6.30819 6.47103 6.50270 6.68544 6.68850 7.19129 7.26157 7.43111 7.57540 7.71524 8.02397 8.26110 8.34518 8.63000 9.01371 9.34118 9.65572 11.12371 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017810 B = 0.005939 C = 0.005149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.792051 B = 4713.818319 C = 5436.794183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.136 3.864 3 N -0.305 5.305 4 N -0.374 5.374 5 C 0.107 3.893 6 C 0.086 3.914 7 C -0.085 4.085 8 C -0.194 4.194 9 C 0.006 3.994 10 C -0.213 4.213 11 C 0.529 3.471 12 O -0.523 6.523 13 N -0.605 5.605 14 C 0.085 3.915 15 C 0.248 3.752 16 C -0.519 4.519 17 H 0.056 0.944 18 C 0.060 3.940 19 N -0.897 5.897 20 Si 0.895 3.105 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.277 1.277 24 H 0.065 0.935 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.040 0.960 36 H 0.057 0.943 37 H 0.070 0.930 38 H 0.041 0.959 39 H 0.027 0.973 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.350 -6.470 14.286 18.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.031 4.031 3 N -0.126 5.126 4 N -0.155 5.155 5 C -0.035 4.035 6 C -0.041 4.041 7 C -0.143 4.143 8 C -0.205 4.205 9 C -0.016 4.016 10 C -0.234 4.234 11 C 0.318 3.682 12 O -0.402 6.402 13 N -0.337 5.337 14 C -0.059 4.059 15 C 0.128 3.872 16 C -0.558 4.558 17 H 0.074 0.926 18 C -0.141 4.141 19 N -0.537 5.537 20 Si 0.722 3.278 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.203 1.203 24 H 0.084 0.916 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.085 0.915 28 H 0.099 0.901 29 H 0.105 0.895 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.100 0.900 33 H 0.139 0.861 34 H 0.142 0.858 35 H 0.059 0.941 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.059 0.941 39 H 0.045 0.955 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.813 -4.422 13.991 17.652 hybrid contribution -0.876 -0.298 -0.169 0.941 sum 8.936 -4.721 13.822 17.123 Atomic orbital electron populations 1.20143 0.87084 1.04199 1.01308 1.22074 0.96175 0.89331 0.95487 1.76963 0.85858 1.22835 1.26962 1.47795 1.05446 1.03827 1.58478 1.21693 0.84692 0.94720 1.02416 1.21190 0.95974 0.84563 1.02381 1.20358 0.92572 0.98281 1.03114 1.18716 0.90914 0.93425 1.17477 1.21508 0.92705 0.91803 0.95538 1.22413 1.04004 1.01296 0.95655 1.17068 0.80718 0.86483 0.83885 1.90862 1.48343 1.22310 1.78643 1.48135 1.43322 1.20200 1.22087 1.21612 0.97697 0.85742 1.00869 1.19182 0.97503 0.89580 0.80888 1.21393 1.14782 1.19343 1.00258 0.92558 1.24924 0.97024 0.97107 0.95066 1.69931 1.40864 1.37802 1.05069 0.86612 0.82549 0.80970 0.77635 1.20143 1.21290 1.20270 0.91620 0.90584 0.90649 0.91470 0.90077 0.89517 0.90379 0.91616 0.90043 0.86069 0.85817 0.94143 0.92410 0.91098 0.94108 0.95475 0.92830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.28 9.87 36.01 0.36 -0.93 16 2 C 0.14 2.71 5.54 -81.96 -0.45 2.26 16 3 N -0.31 -6.20 12.49 33.93 0.42 -5.78 16 4 N -0.37 -6.28 3.98 -63.24 -0.25 -6.53 16 5 C 0.11 1.22 11.06 59.85 0.66 1.88 16 6 C 0.09 1.37 7.02 -81.45 -0.57 0.80 16 7 C -0.08 -0.91 9.71 36.01 0.35 -0.56 16 8 C -0.19 -3.42 3.90 -105.13 -0.41 -3.83 16 9 C 0.01 0.08 9.49 -37.18 -0.35 -0.27 16 10 C -0.21 -3.41 8.40 -39.34 -0.33 -3.74 16 11 C 0.53 11.35 6.04 -14.89 -0.09 11.26 16 12 O -0.52 -13.32 12.08 5.15 0.06 -13.26 16 13 N -0.60 -13.30 2.86 -186.33 -0.53 -13.84 16 14 C 0.09 1.40 10.08 59.85 0.60 2.01 16 15 C 0.25 6.71 5.16 -5.19 -0.03 6.69 16 16 C -0.52 -15.02 9.39 -34.44 -0.32 -15.35 16 17 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 18 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 19 N -0.90 -27.45 13.29 55.43 0.74 -26.71 16 20 Si 0.89 22.45 29.54 -169.99 -5.02 17.43 16 21 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 26 H 0.07 1.45 6.00 -51.92 -0.31 1.14 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.08 0.73 7.65 -51.93 -0.40 0.33 16 29 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.06 0.54 7.72 -51.93 -0.40 0.14 16 32 H 0.08 0.73 7.97 -51.93 -0.41 0.32 16 33 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 34 H 0.12 1.56 6.21 -52.49 -0.33 1.24 16 35 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.78 6.18 -51.93 -0.32 0.46 16 37 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 38 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16 39 H 0.03 0.75 8.07 -51.93 -0.42 0.33 16 40 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 334.98 15.07 5.05 5.05 Total: -1.00 -37.23 334.98 -6.12 -43.35 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -5.90 Total: -1.58 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: -0.69 Total: 1.88 kcal Atomic # 7 Polarization: -53.24 SS G_CDS: 0.38 Total: -52.86 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: 0.06 Total: -13.26 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -37.23 -6.12 -43.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096400636.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.748 kcal (2) G-P(sol) polarization free energy of solvation -37.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds