Wall clock time and date at job start Mon Mar 30 2020 02:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30439 * 125.98101 * 2 1 4 4 N 1.39919 * 108.96619 * 179.97438 * 3 2 1 5 5 C 1.46504 * 125.74245 * 180.02562 * 4 3 2 6 6 C 1.34401 * 108.51554 * 359.74937 * 4 3 2 7 7 C 1.50699 * 126.31744 * 180.26697 * 6 4 3 8 8 C 1.38283 * 107.36303 * 0.39638 * 6 4 3 9 9 C 1.46969 * 126.44097 * 179.87025 * 8 6 4 10 10 C 1.35044 * 120.00051 * 241.27453 * 9 8 6 11 11 C 1.41831 * 119.99906 * 7.54873 * 10 9 8 12 12 O 1.21745 * 119.99989 * 6.19483 * 11 10 9 13 13 N 1.34772 * 120.00145 * 186.18932 * 11 10 9 14 14 C 1.46502 * 119.99850 * 0.02562 * 13 11 10 15 15 C 1.46501 * 120.00306 * 180.02562 * 13 11 10 16 16 C 1.50705 * 109.46976 * 270.00404 * 15 13 11 17 17 H 1.08001 * 119.99797 * 359.97438 * 16 15 13 18 18 C 1.37878 * 119.99814 * 180.02562 * 16 15 13 19 19 N 1.31514 * 119.99900 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99970 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46777 * 59.99741 * 20 18 16 22 22 H 1.48494 * 109.46962 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.46789 * 299.99989 * 20 18 16 24 24 H 1.08993 * 109.47327 * 275.30344 * 1 2 3 25 25 H 1.08997 * 109.47021 * 35.31017 * 1 2 3 26 26 H 1.09010 * 109.46595 * 155.30895 * 1 2 3 27 27 H 1.09004 * 109.46734 * 90.02573 * 5 4 3 28 28 H 1.09000 * 109.47367 * 210.02570 * 5 4 3 29 29 H 1.09000 * 109.47058 * 330.02881 * 5 4 3 30 30 H 1.09006 * 109.47053 * 270.14872 * 7 6 4 31 31 H 1.08999 * 109.46927 * 30.15279 * 7 6 4 32 32 H 1.08996 * 109.46893 * 150.15266 * 7 6 4 33 33 H 1.07998 * 119.99948 * 61.27791 * 9 8 6 34 34 H 1.07998 * 120.00357 * 187.55638 * 10 9 8 35 35 H 1.08997 * 109.47076 * 269.99455 * 14 13 11 36 36 H 1.08998 * 109.47398 * 29.99975 * 14 13 11 37 37 H 1.08997 * 109.47262 * 149.99770 * 14 13 11 38 38 H 1.08993 * 109.47089 * 29.99892 * 15 13 11 39 39 H 1.08998 * 109.47136 * 150.00161 * 15 13 11 40 40 H 0.97009 * 119.99546 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2734 1.0555 0.0000 4 7 3.6114 0.6461 0.0006 5 6 4.7776 1.5327 0.0013 6 6 3.6466 -0.6974 0.0065 7 6 4.8838 -1.5578 0.0149 8 6 2.3380 -1.1446 0.0006 9 6 1.8942 -2.5456 0.0012 10 6 1.1599 -3.0218 -1.0272 11 6 0.9519 -2.2222 -2.1801 12 8 1.5260 -1.1545 -2.2920 13 7 0.1187 -2.6444 -3.1516 14 6 -0.5726 -3.9290 -3.0167 15 6 -0.0958 -1.8187 -4.3427 16 6 -1.2536 -0.8841 -4.1041 17 1 -1.7776 -0.9035 -3.1599 18 6 -1.6447 -0.0050 -5.0917 19 7 -1.0069 0.0182 -6.2416 20 14 -3.0804 1.1531 -4.7963 21 1 -2.7793 2.0285 -3.6352 22 1 -3.2977 1.9900 -6.0036 23 1 -4.3050 0.3616 -4.5151 24 1 -0.3633 0.0950 1.0232 25 1 -0.3633 0.8386 -0.5940 26 1 -0.3633 -0.9338 -0.4293 27 1 5.0666 1.7520 1.0292 28 1 5.6056 1.0444 -0.5126 29 1 4.5284 2.4614 -0.5120 30 1 5.1874 -1.7675 -1.0108 31 1 5.6874 -1.0335 0.5318 32 1 4.6712 -2.4948 0.5296 33 1 2.1553 -3.1944 0.8242 34 1 0.7309 -4.0114 -0.9719 35 1 0.0403 -4.7187 -3.4511 36 1 -0.7433 -4.1406 -1.9612 37 1 -1.5290 -3.8834 -3.5374 38 1 0.8033 -1.2381 -4.5489 39 1 -0.3169 -2.4611 -5.1950 40 1 -1.2818 0.6370 -6.9363 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096400636.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:01 Heat of formation + Delta-G solvation = 42.291094 kcal Electronic energy + Delta-G solvation = -22159.988920 eV Core-core repulsion = 18976.497209 eV Total energy + Delta-G solvation = -3183.491711 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.10949 -40.47927 -36.61012 -35.23017 -34.73223 -34.29062 -32.02011 -30.38022 -29.84473 -27.86010 -27.16164 -26.47422 -25.21898 -22.93576 -20.94404 -20.26046 -19.04789 -18.65117 -18.08266 -17.23514 -16.70215 -16.52720 -16.03347 -15.82933 -15.00468 -14.82285 -14.45554 -14.36746 -14.13340 -14.00026 -13.84911 -13.59761 -13.45482 -13.37448 -13.36093 -13.08193 -12.94867 -12.77199 -12.72629 -12.60396 -12.41524 -12.15120 -11.69933 -11.43187 -10.63810 -10.61515 -10.23395 -9.88143 -9.22027 -8.65726 -8.20031 -6.34508 0.39209 1.06376 1.33261 1.38534 1.45027 1.78004 1.97972 2.34186 2.69758 2.79674 3.08441 3.66813 3.82395 4.11226 4.18755 4.31324 4.34309 4.39774 4.48268 4.53365 4.60337 4.67918 4.71918 4.76050 4.79801 4.96360 4.99755 5.02678 5.06351 5.06959 5.22241 5.27151 5.46019 5.60550 5.66358 5.86635 5.98266 6.11578 6.33535 6.74661 6.93943 7.00474 7.32338 7.74429 8.85939 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017810 B = 0.005939 C = 0.005149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.792051 B = 4713.818319 C = 5436.794183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.110 3.890 3 N -0.356 5.356 4 N -0.380 5.380 5 C 0.095 3.905 6 C 0.090 3.910 7 C -0.082 4.082 8 C -0.227 4.227 9 C 0.035 3.965 10 C -0.230 4.230 11 C 0.522 3.478 12 O -0.577 6.577 13 N -0.617 5.617 14 C 0.081 3.919 15 C 0.266 3.734 16 C -0.531 4.531 17 H 0.053 0.947 18 C 0.005 3.995 19 N -0.932 5.932 20 Si 0.962 3.038 21 H -0.281 1.281 22 H -0.279 1.279 23 H -0.256 1.256 24 H 0.095 0.905 25 H 0.042 0.958 26 H 0.066 0.934 27 H 0.095 0.905 28 H 0.108 0.892 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.106 0.894 33 H 0.176 0.824 34 H 0.166 0.834 35 H 0.065 0.935 36 H 0.096 0.904 37 H 0.060 0.940 38 H -0.011 1.011 39 H 0.016 0.984 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.957 -8.411 16.674 21.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.056 4.056 3 N -0.179 5.179 4 N -0.161 5.161 5 C -0.045 4.045 6 C -0.039 4.039 7 C -0.140 4.140 8 C -0.239 4.239 9 C 0.014 3.986 10 C -0.250 4.250 11 C 0.315 3.685 12 O -0.458 6.458 13 N -0.349 5.349 14 C -0.061 4.061 15 C 0.144 3.856 16 C -0.569 4.569 17 H 0.071 0.929 18 C -0.193 4.193 19 N -0.573 5.573 20 Si 0.786 3.214 21 H -0.207 1.207 22 H -0.204 1.204 23 H -0.180 1.180 24 H 0.114 0.886 25 H 0.061 0.939 26 H 0.085 0.915 27 H 0.114 0.886 28 H 0.127 0.873 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.113 0.887 32 H 0.125 0.875 33 H 0.193 0.807 34 H 0.183 0.817 35 H 0.084 0.916 36 H 0.114 0.886 37 H 0.079 0.921 38 H 0.008 0.992 39 H 0.034 0.966 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.405 -6.405 16.397 20.449 hybrid contribution -0.919 0.359 -0.890 1.329 sum 9.486 -6.046 15.507 19.158 Atomic orbital electron populations 1.20061 0.87464 1.02152 1.02383 1.22301 0.96508 0.90581 0.96233 1.76823 0.87982 1.24176 1.28899 1.48233 1.05229 1.05139 1.57535 1.22083 0.83758 0.94072 1.04571 1.22037 0.97337 0.84599 0.99934 1.20554 0.91041 0.98754 1.03678 1.19192 0.91463 0.94482 1.18721 1.22033 0.89850 0.90724 0.95956 1.22364 1.06330 1.02448 0.93888 1.17975 0.79418 0.86317 0.84837 1.90843 1.50335 1.24855 1.79806 1.48160 1.44419 1.21570 1.20730 1.21886 0.97102 0.83592 1.03566 1.18575 0.94541 0.89437 0.83046 1.21660 1.15224 1.19997 1.00060 0.92888 1.25842 0.99902 0.98763 0.94769 1.70059 1.42502 1.38714 1.05979 0.85555 0.79683 0.78751 0.77394 1.20663 1.20416 1.18048 0.88610 0.93904 0.91522 0.88628 0.87324 0.90489 0.90654 0.88662 0.87512 0.80713 0.81682 0.91639 0.88557 0.92149 0.99247 0.96642 0.92624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.39 9.87 71.24 0.70 -1.69 16 2 C 0.11 4.44 5.54 43.56 0.24 4.68 16 3 N -0.36 -14.93 12.49 -46.58 -0.58 -15.51 16 4 N -0.38 -12.55 3.98 -353.99 -1.41 -13.96 16 5 C 0.10 2.04 11.06 127.77 1.41 3.46 16 6 C 0.09 2.68 7.02 42.18 0.30 2.98 16 7 C -0.08 -1.46 9.71 71.24 0.69 -0.77 16 8 C -0.23 -7.72 3.90 -20.19 -0.08 -7.80 16 9 C 0.04 0.91 9.49 23.82 0.23 1.13 16 10 C -0.23 -6.74 8.40 22.42 0.19 -6.55 16 11 C 0.52 22.46 6.04 85.13 0.51 22.98 16 12 O -0.58 -30.51 12.08 -4.49 -0.05 -30.57 16 13 N -0.62 -27.44 2.86 -861.62 -2.46 -29.90 16 14 C 0.08 2.52 10.08 127.77 1.29 3.81 16 15 C 0.27 15.12 5.16 85.63 0.44 15.56 16 16 C -0.53 -31.86 9.39 25.60 0.24 -31.61 16 17 H 0.05 3.14 7.81 -2.91 -0.02 3.11 16 18 C 0.01 0.33 5.46 84.65 0.46 0.79 16 19 N -0.93 -58.99 13.29 21.45 0.28 -58.70 16 20 Si 0.96 47.02 29.54 68.60 2.03 49.05 16 21 H -0.28 -13.87 7.11 99.48 0.71 -13.16 16 22 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 23 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 24 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 25 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.07 2.62 6.00 -2.38 -0.01 2.61 16 27 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.11 1.69 7.65 -2.39 -0.02 1.68 16 29 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 31 H 0.09 1.14 7.72 -2.39 -0.02 1.12 16 32 H 0.11 1.38 7.97 -2.39 -0.02 1.36 16 33 H 0.18 2.61 8.06 -2.91 -0.02 2.59 16 34 H 0.17 3.36 6.21 -2.91 -0.02 3.34 16 35 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.10 2.25 6.18 -2.39 -0.01 2.23 16 37 H 0.06 2.00 8.07 -2.39 -0.02 1.98 16 38 H -0.01 -0.70 7.42 -2.39 -0.02 -0.72 16 39 H 0.02 0.90 8.07 -2.39 -0.02 0.88 16 40 H 0.26 15.77 8.31 -92.70 -0.77 15.00 16 Total: -1.00 -88.33 334.98 5.46 -82.87 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: 1.03 Total: 9.78 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: 6.63 Total: 6.96 kcal Atomic # 7 Polarization: -113.91 SS G_CDS: -4.17 Total: -118.08 kcal Atomic # 8 Polarization: -30.51 SS G_CDS: -0.05 Total: -30.57 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.05 kcal Total: -88.33 5.46 -82.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096400636.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.160 kcal (2) G-P(sol) polarization free energy of solvation -88.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds