Wall clock time and date at job start Mon Mar 30 2020 02:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39673 * 126.06917 * 2 1 4 4 C 1.38411 * 105.35421 * 179.85142 * 3 2 1 5 5 C 1.47164 * 126.88031 * 180.14257 * 4 3 2 6 6 O 1.21629 * 120.00165 * 169.32798 * 5 4 3 7 7 N 1.34781 * 119.99780 * 349.32235 * 5 4 3 8 8 C 1.46505 * 119.99842 * 181.76220 * 7 5 4 9 9 C 1.50691 * 109.47435 * 89.99641 * 8 7 5 10 10 H 1.08001 * 120.00184 * 0.02562 * 9 8 7 11 11 C 1.37881 * 120.00009 * 180.02562 * 9 8 7 12 12 N 1.31517 * 119.99866 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 120.00002 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.46970 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.46770 * 120.00175 * 13 11 9 16 16 H 1.48501 * 109.46936 * 239.99948 * 13 11 9 17 17 C 1.46496 * 120.00477 * 1.75750 * 7 5 4 18 18 C 1.53001 * 109.47217 * 85.30429 * 17 7 5 19 19 C 1.53002 * 117.49947 * 214.39573 * 18 17 7 20 20 C 1.52994 * 117.50024 * 145.73833 * 18 17 7 21 21 N 1.36593 * 106.23151 * 0.40026 * 4 3 2 22 22 C 1.46501 * 125.18813 * 179.73326 * 21 4 3 23 23 N 1.28439 * 109.62346 * 359.73893 * 21 4 3 24 24 H 1.09002 * 109.47238 * 269.71394 * 1 2 3 25 25 H 1.09003 * 109.47220 * 149.71449 * 1 2 3 26 26 H 1.08999 * 109.47112 * 29.71518 * 1 2 3 27 27 H 1.07998 * 127.32005 * 0.02562 * 3 2 1 28 28 H 1.08999 * 109.47024 * 209.99948 * 8 7 5 29 29 H 1.09001 * 109.46739 * 329.99329 * 8 7 5 30 30 H 0.97002 * 119.99884 * 179.97438 * 12 11 9 31 31 H 1.08994 * 109.47560 * 205.30824 * 17 7 5 32 32 H 1.09007 * 109.47100 * 325.30683 * 17 7 5 33 33 H 1.09000 * 115.54342 * 0.06203 * 18 17 7 34 34 H 1.09000 * 117.49877 * 0.02562 * 19 18 17 35 35 H 1.09005 * 117.49607 * 145.01369 * 19 18 17 36 36 H 1.08999 * 117.49872 * 214.98074 * 20 18 17 37 37 H 1.08997 * 117.50004 * 359.97438 * 20 18 17 38 38 H 1.08996 * 109.47294 * 265.59839 * 22 21 4 39 39 H 1.09006 * 109.47213 * 25.59257 * 22 21 4 40 40 H 1.08994 * 109.47610 * 145.58931 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3293 1.1290 0.0000 4 6 3.6240 0.6394 0.0035 5 6 4.8664 1.4281 0.0078 6 8 5.9340 0.8799 0.2056 7 7 4.8213 2.7578 -0.2076 8 6 6.0616 3.5368 -0.2416 9 6 6.5887 3.5807 -1.6527 10 1 6.0532 3.0789 -2.4451 11 6 7.7546 4.2615 -1.9322 12 7 8.4065 4.8730 -0.9674 13 14 8.4076 4.3165 -3.6815 14 1 7.4965 3.5561 -4.5741 15 1 8.4839 5.7278 -4.1372 16 1 9.7620 3.7089 -3.7236 17 6 3.5321 3.4242 -0.4076 18 6 2.9248 3.7785 0.9512 19 6 1.4020 3.7111 1.0837 20 6 2.1079 5.0687 1.0452 21 7 3.5172 -0.7223 -0.0038 22 6 4.6449 -1.6575 -0.0090 23 7 2.2774 -1.0578 -0.0057 24 1 -0.3634 -0.0051 1.0277 25 1 -0.3634 -0.8874 -0.5183 26 1 -0.3633 0.8925 -0.5094 27 1 2.0206 2.1639 0.0004 28 1 5.8630 4.5514 0.1038 29 1 6.8017 3.0701 0.4084 30 1 9.2270 5.3517 -1.1640 31 1 3.6799 4.3348 -0.9881 32 1 2.8575 2.7568 -0.9442 33 1 3.5186 3.4943 1.8199 34 1 0.8329 3.4139 0.2028 35 1 0.9940 3.3829 2.0397 36 1 2.1640 5.6333 1.9758 37 1 2.0035 5.6653 0.1390 38 1 4.8741 -1.9447 -1.0351 39 1 5.5163 -1.1784 0.4375 40 1 4.3834 -2.5452 0.5670 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103437537.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:23 Heat of formation + Delta-G solvation = 94.400468 kcal Electronic energy + Delta-G solvation = -22206.272153 eV Core-core repulsion = 19025.040074 eV Total energy + Delta-G solvation = -3181.232079 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.32297 -39.06949 -37.48677 -34.66304 -33.67631 -32.68096 -30.78157 -29.52641 -27.76477 -26.50648 -25.19168 -23.61387 -22.80382 -21.55048 -20.66879 -20.21858 -18.53030 -16.81999 -16.54831 -16.13496 -15.95331 -15.21901 -14.84071 -14.59540 -14.22178 -14.10578 -13.45039 -13.35067 -13.17606 -13.00145 -12.36930 -12.33649 -12.08538 -12.05167 -11.65796 -11.45664 -11.39734 -11.27450 -10.88666 -10.70956 -10.36945 -10.16361 -10.15017 -9.83264 -9.65685 -9.18823 -8.75406 -8.55973 -8.47817 -7.79298 -6.09099 -4.14045 1.69874 2.70253 2.78464 3.27111 3.34849 3.38869 3.75673 3.82141 3.89504 4.40950 4.65365 4.75188 4.95112 5.02049 5.12875 5.23929 5.26594 5.31666 5.39047 5.51794 5.63190 5.66122 5.68930 5.78252 5.82816 5.85450 5.93539 5.99229 5.99700 6.13933 6.18374 6.45065 6.76454 6.98125 7.02768 7.35370 7.44110 7.86840 8.16354 8.22055 8.35736 8.78681 8.95197 9.51147 10.99018 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016762 B = 0.006039 C = 0.004935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.078198 B = 4635.381063 C = 5672.369246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.012 3.988 3 C -0.224 4.224 4 C -0.019 4.019 5 C 0.578 3.422 6 O -0.543 6.543 7 N -0.572 5.572 8 C 0.247 3.753 9 C -0.528 4.528 10 H 0.058 0.942 11 C 0.063 3.937 12 N -0.893 5.893 13 Si 0.898 3.102 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.283 1.283 17 C 0.115 3.885 18 C -0.167 4.167 19 C -0.186 4.186 20 C -0.174 4.174 21 N -0.263 5.263 22 C 0.082 3.918 23 N -0.291 5.291 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.073 0.927 27 H 0.194 0.806 28 H 0.038 0.962 29 H 0.046 0.954 30 H 0.263 0.737 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.108 0.892 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.079 0.921 39 H 0.118 0.882 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.382 -4.859 3.158 16.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.145 4.145 3 C -0.252 4.252 4 C -0.148 4.148 5 C 0.363 3.637 6 O -0.422 6.422 7 N -0.301 5.301 8 C 0.128 3.872 9 C -0.567 4.567 10 H 0.077 0.923 11 C -0.140 4.140 12 N -0.532 5.532 13 Si 0.726 3.274 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.209 1.209 17 C -0.009 4.009 18 C -0.186 4.186 19 C -0.223 4.223 20 C -0.211 4.211 21 N -0.050 5.050 22 C -0.058 4.058 23 N -0.125 5.125 24 H 0.088 0.912 25 H 0.086 0.914 26 H 0.092 0.908 27 H 0.210 0.790 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.108 0.892 32 H 0.110 0.890 33 H 0.126 0.874 34 H 0.117 0.883 35 H 0.113 0.887 36 H 0.111 0.889 37 H 0.115 0.885 38 H 0.098 0.902 39 H 0.137 0.863 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -14.492 -6.283 3.282 16.133 hybrid contribution 0.568 0.891 -0.913 1.397 sum -13.924 -5.392 2.369 15.118 Atomic orbital electron populations 1.20018 0.86933 1.02747 1.02358 1.21994 0.96798 0.89299 1.06416 1.23603 0.90475 1.02019 1.09067 1.21818 0.96618 0.84937 1.11446 1.16914 0.85855 0.82560 0.78323 1.90715 1.30454 1.70143 1.50859 1.47917 1.08809 1.05903 1.67503 1.19406 0.79498 0.90302 0.97954 1.21450 1.08443 1.33071 0.93738 0.92332 1.24920 0.96316 0.95207 0.97510 1.69941 1.17306 1.34139 1.31797 0.86443 0.78950 0.77664 0.84385 1.19802 1.20881 1.20854 1.21743 0.85691 0.99247 0.94178 1.22988 0.93187 1.02047 1.00391 1.23107 0.94741 1.01233 1.03178 1.23052 1.04037 0.90682 1.03373 1.45483 1.04832 1.04591 1.50066 1.22386 0.86589 0.92571 1.04301 1.73006 0.89739 1.28150 1.21568 0.91180 0.91422 0.90814 0.78968 0.94359 0.93553 0.92702 0.89207 0.88985 0.87401 0.88332 0.88686 0.88928 0.88463 0.90201 0.86344 0.89489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.62 10.45 36.01 0.38 -0.25 16 2 C 0.01 0.17 7.22 -82.47 -0.60 -0.42 16 3 C -0.22 -3.46 8.12 -38.98 -0.32 -3.78 16 4 C -0.02 -0.36 6.80 -82.06 -0.56 -0.92 16 5 C 0.58 12.52 7.61 -12.63 -0.10 12.42 16 6 O -0.54 -13.33 14.19 5.25 0.07 -13.26 16 7 N -0.57 -12.14 2.44 -176.43 -0.43 -12.57 16 8 C 0.25 6.32 5.15 -5.19 -0.03 6.29 16 9 C -0.53 -14.70 9.39 -34.44 -0.32 -15.02 16 10 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 11 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 12 N -0.89 -26.04 13.29 55.43 0.74 -25.31 16 13 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 14 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 15 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 C 0.12 1.90 5.23 -4.04 -0.02 1.88 16 18 C -0.17 -2.31 5.02 -90.62 -0.45 -2.76 16 19 C -0.19 -1.95 8.56 -26.70 -0.23 -2.17 16 20 C -0.17 -1.97 10.21 -26.70 -0.27 -2.24 16 21 N -0.26 -4.54 3.75 -63.88 -0.24 -4.78 16 22 C 0.08 1.18 11.06 59.85 0.66 1.84 16 23 N -0.29 -4.80 11.90 33.64 0.40 -4.40 16 24 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.19 2.56 1.14 -52.49 -0.06 2.50 16 28 H 0.04 0.99 8.07 -51.93 -0.42 0.57 16 29 H 0.05 1.33 7.40 -51.93 -0.38 0.95 16 30 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 31 H 0.09 1.50 7.96 -51.93 -0.41 1.08 16 32 H 0.09 1.40 4.57 -51.92 -0.24 1.16 16 33 H 0.11 1.68 8.10 -51.93 -0.42 1.26 16 34 H 0.10 0.90 7.24 -51.93 -0.38 0.52 16 35 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.12 1.90 5.92 -51.93 -0.31 1.60 16 40 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 328.35 15.07 4.95 4.95 Total: -1.00 -32.75 328.35 -7.03 -39.78 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -5.55 Total: 2.52 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: -1.95 Total: -3.47 kcal Atomic # 7 Polarization: -47.53 SS G_CDS: 0.47 Total: -47.06 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: 0.07 Total: -13.26 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.75 -7.03 -39.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103437537.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.178 kcal (2) G-P(sol) polarization free energy of solvation -32.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds