Wall clock time and date at job start Mon Mar 30 2020 02:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30167 * 126.79911 * 2 1 4 4 O 1.20923 * 111.60513 * 180.25339 * 3 2 1 5 5 C 1.34043 * 111.56744 * 359.74171 * 4 3 2 6 6 C 1.50703 * 126.78085 * 180.02562 * 5 4 3 7 7 C 1.35454 * 106.44248 * 0.02562 * 5 4 3 8 8 C 1.50704 * 128.00479 * 179.97438 * 7 5 4 9 9 N 1.46903 * 109.47120 * 89.99862 * 8 7 5 10 10 C 1.46905 * 110.99863 * 66.04461 * 9 8 7 11 11 C 1.46895 * 110.99856 * 189.99905 * 9 8 7 12 12 C 1.52994 * 109.47270 * 169.99896 * 11 9 8 13 13 H 1.09009 * 109.47154 * 54.99975 * 12 11 9 14 14 C 1.47200 * 109.47451 * 295.00037 * 12 11 9 15 15 N 6.47562 * 114.85575 * 140.29335 * 2 1 3 16 16 C 1.52996 * 109.47347 * 174.99819 * 12 11 9 17 17 C 1.50702 * 109.47159 * 185.00014 * 16 12 11 18 18 H 1.08002 * 120.00299 * 0.02562 * 17 16 12 19 19 C 1.37884 * 119.99942 * 179.72211 * 17 16 12 20 20 N 1.31514 * 119.99698 * 0.28408 * 19 17 16 21 21 Si 1.86794 * 119.99837 * 180.27476 * 19 17 16 22 22 H 1.48496 * 109.47341 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.46983 * 120.00379 * 21 19 17 24 24 H 1.48503 * 109.47491 * 240.00192 * 21 19 17 25 25 H 1.08998 * 109.47202 * 270.16593 * 1 2 3 26 26 H 1.08991 * 109.47410 * 30.17256 * 1 2 3 27 27 H 1.09010 * 109.46784 * 150.16991 * 1 2 3 28 28 H 1.08996 * 109.46611 * 270.00350 * 6 5 4 29 29 H 1.09003 * 109.46511 * 30.00115 * 6 5 4 30 30 H 1.08992 * 109.46848 * 150.00227 * 6 5 4 31 31 H 1.08992 * 109.46810 * 329.99616 * 8 7 5 32 32 H 1.08995 * 109.46713 * 209.99900 * 8 7 5 33 33 H 1.08997 * 109.46756 * 183.95173 * 10 9 8 34 34 H 1.09001 * 109.47143 * 303.95211 * 10 9 8 35 35 H 1.08997 * 109.46972 * 63.95331 * 10 9 8 36 36 H 1.08998 * 109.47324 * 49.99898 * 11 9 8 37 37 H 1.09002 * 109.47421 * 290.00075 * 11 9 8 38 38 H 1.09004 * 109.47066 * 65.00217 * 16 12 11 39 39 H 1.08994 * 109.47405 * 305.00047 * 16 12 11 40 40 H 0.97005 * 119.99651 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2867 1.0423 0.0000 4 8 3.4537 0.7254 -0.0050 5 6 3.6025 -0.6068 -0.0034 6 6 4.9022 -1.3695 -0.0077 7 6 2.3540 -1.1320 0.0028 8 6 1.9591 -2.5864 0.0064 9 7 1.8370 -3.0573 1.3925 10 6 0.7221 -2.3907 2.0786 11 6 1.6875 -4.5178 1.4411 12 6 1.8135 -4.9955 2.8891 13 1 1.0932 -4.4639 3.5111 14 6 3.1759 -4.7272 3.3775 15 7 4.2289 -4.5204 3.7538 16 6 1.5343 -6.4983 2.9565 17 6 1.5374 -6.9457 4.3955 18 1 1.7197 -6.2298 5.1833 19 6 1.3011 -8.2680 4.7069 20 7 1.0787 -9.1398 3.7476 21 14 1.2973 -8.8211 6.4910 22 1 1.5709 -7.6566 7.3709 23 1 -0.0303 -9.3948 6.8285 24 1 2.3474 -9.8517 6.6922 25 1 -0.3633 0.0030 1.0276 26 1 -0.3634 0.8883 -0.5165 27 1 -0.3633 -0.8916 -0.5112 28 1 5.2111 -1.5550 -1.0364 29 1 5.6682 -0.7849 0.5019 30 1 4.7673 -2.3201 0.5082 31 1 2.7205 -3.1708 -0.5102 32 1 1.0028 -2.7044 -0.5030 33 1 0.6976 -2.7051 3.1220 34 1 0.8579 -1.3104 2.0277 35 1 -0.2163 -2.6622 1.5953 36 1 2.4656 -4.9831 0.8360 37 1 0.7086 -4.7960 1.0506 38 1 2.3069 -7.0363 2.4071 39 1 0.5608 -6.7073 2.5131 40 1 0.9129 -10.0701 3.9666 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112559754.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:06 Heat of formation + Delta-G solvation = 75.382734 kcal Electronic energy + Delta-G solvation = -21314.354865 eV Core-core repulsion = 18132.298115 eV Total energy + Delta-G solvation = -3182.056750 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -44.96887 -38.37778 -36.11372 -34.64663 -33.73190 -33.35794 -31.59066 -29.12738 -28.47145 -27.30499 -26.93047 -24.79437 -22.32302 -21.65996 -20.97097 -20.09754 -17.76355 -17.08267 -16.69869 -16.53838 -15.41555 -15.17059 -14.80381 -14.46585 -14.17465 -13.65188 -13.56928 -13.31143 -13.16668 -12.89098 -12.79757 -12.64979 -12.44377 -12.20932 -12.01409 -11.84004 -11.62721 -11.43568 -11.21712 -11.07994 -10.96529 -10.71468 -10.54019 -10.19064 -9.98183 -9.58963 -9.28524 -9.16690 -8.48686 -8.27496 -6.12465 -4.15433 1.40433 2.09037 3.05190 3.26644 3.35170 3.39823 3.70446 3.80692 4.03076 4.11072 4.36572 4.39688 4.71591 4.83544 4.90101 5.12758 5.21760 5.26032 5.28285 5.30979 5.32111 5.42956 5.46792 5.51826 5.58747 5.69145 5.73366 5.81131 5.87003 5.95266 6.02238 6.08689 6.33128 6.46174 7.04240 7.09497 7.39254 7.49413 7.83101 8.20389 8.21722 8.56403 8.89555 9.50353 10.98452 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030046 B = 0.003684 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.670836 B = 7599.302190 C = 7957.350589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.025 3.975 3 N -0.372 5.372 4 O 0.091 5.909 5 C -0.011 4.011 6 C -0.075 4.075 7 C -0.193 4.193 8 C 0.133 3.867 9 N -0.540 5.540 10 C 0.017 3.983 11 C 0.062 3.938 12 C 0.010 3.990 13 H 0.100 0.900 14 C 0.256 3.744 15 N -0.479 5.479 16 C 0.031 3.969 17 C -0.526 4.526 18 H 0.057 0.943 19 C 0.063 3.937 20 N -0.891 5.891 21 Si 0.891 3.109 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.283 1.283 25 H 0.082 0.918 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.049 0.951 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.030 0.970 36 H 0.080 0.920 37 H 0.056 0.944 38 H 0.026 0.974 39 H 0.037 0.963 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.161 14.562 -11.095 18.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.135 4.135 3 N -0.079 5.079 4 O 0.027 5.973 5 C -0.075 4.075 6 C -0.133 4.133 7 C -0.197 4.197 8 C 0.005 3.995 9 N -0.265 5.265 10 C -0.131 4.131 11 C -0.066 4.066 12 C -0.012 4.012 13 H 0.118 0.882 14 C -0.061 4.061 15 N -0.156 5.156 16 C -0.007 4.007 17 C -0.564 4.564 18 H 0.075 0.925 19 C -0.139 4.139 20 N -0.530 5.530 21 Si 0.718 3.282 22 H -0.197 1.197 23 H -0.209 1.209 24 H -0.209 1.209 25 H 0.100 0.900 26 H 0.093 0.907 27 H 0.099 0.901 28 H 0.104 0.896 29 H 0.100 0.900 30 H 0.117 0.883 31 H 0.105 0.895 32 H 0.067 0.933 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.049 0.951 36 H 0.099 0.901 37 H 0.074 0.926 38 H 0.045 0.955 39 H 0.055 0.945 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.613 16.134 -10.309 19.156 hybrid contribution -1.279 -1.485 0.511 2.025 sum -0.665 14.649 -9.798 17.636 Atomic orbital electron populations 1.20236 0.86207 1.03523 1.03451 1.23419 0.98748 0.88675 1.02631 1.73818 0.89333 1.24008 1.20744 1.84782 1.21606 1.22792 1.68093 1.24284 0.98424 0.83389 1.01388 1.20380 0.89851 0.99321 1.03707 1.20789 0.91567 0.97085 1.10275 1.20245 1.00688 0.88393 0.90165 1.62034 1.44218 1.06126 1.14078 1.22559 0.91184 0.99327 0.99980 1.22274 1.01610 0.85779 0.96972 1.19246 0.85886 1.02109 0.93911 0.88207 1.28894 0.94529 0.90643 0.92033 1.81031 1.12896 1.11573 1.10127 1.19177 0.98248 0.85066 0.98242 1.21175 1.49125 0.94059 0.92013 0.92470 1.24946 0.94917 0.96732 0.97329 1.69946 1.48231 1.03079 1.31765 0.86548 0.77661 0.78833 0.85121 1.19665 1.20859 1.20941 0.89984 0.90733 0.90134 0.89648 0.89983 0.88260 0.89458 0.93287 0.90681 0.91737 0.95129 0.90115 0.92611 0.95538 0.94463 0.92846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 9.53 36.01 0.34 -0.33 16 2 C 0.02 0.29 6.41 -82.10 -0.53 -0.23 16 3 N -0.37 -5.07 12.07 33.42 0.40 -4.67 16 4 O 0.09 1.18 11.20 17.17 0.19 1.38 16 5 C -0.01 -0.12 7.49 -35.30 -0.26 -0.39 16 6 C -0.08 -0.66 10.25 36.01 0.37 -0.30 16 7 C -0.19 -2.23 5.11 -104.42 -0.53 -2.76 16 8 C 0.13 1.41 5.21 -4.97 -0.03 1.39 16 9 N -0.54 -6.80 4.45 -244.38 -1.09 -7.89 16 10 C 0.02 0.20 8.75 60.07 0.53 0.73 16 11 C 0.06 0.85 4.32 -3.83 -0.02 0.83 16 12 C 0.01 0.18 2.13 -93.41 -0.20 -0.01 16 13 H 0.10 1.68 6.34 -51.92 -0.33 1.35 16 14 C 0.26 5.17 13.67 -20.72 -0.28 4.89 16 15 N -0.48 -10.54 18.55 42.20 0.78 -9.76 16 16 C 0.03 0.70 4.42 -27.88 -0.12 0.58 16 17 C -0.53 -13.72 8.60 -34.44 -0.30 -14.02 16 18 H 0.06 1.50 7.59 -52.49 -0.40 1.10 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 20 N -0.89 -25.07 13.29 55.43 0.74 -24.33 16 21 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 22 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 H 0.08 0.67 7.25 -51.93 -0.38 0.29 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.08 0.59 7.65 -51.92 -0.40 0.19 16 28 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.10 0.99 8.05 -51.93 -0.42 0.57 16 31 H 0.09 0.85 7.87 -51.93 -0.41 0.44 16 32 H 0.05 0.46 7.63 -51.93 -0.40 0.07 16 33 H 0.07 0.93 6.37 -51.93 -0.33 0.60 16 34 H 0.06 0.75 4.94 -51.93 -0.26 0.49 16 35 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.08 1.08 7.93 -51.93 -0.41 0.67 16 37 H 0.06 0.70 8.12 -51.93 -0.42 0.28 16 38 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 338.67 15.07 5.10 5.10 Total: -1.00 -31.01 338.67 -5.84 -36.85 By element: Atomic # 1 Polarization: 1.15 SS G_CDS: -5.82 Total: -4.67 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: -1.13 Total: -8.03 kcal Atomic # 7 Polarization: -47.48 SS G_CDS: 0.83 Total: -46.65 kcal Atomic # 8 Polarization: 1.18 SS G_CDS: 0.19 Total: 1.38 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.01 -5.84 -36.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112559754.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.233 kcal (2) G-P(sol) polarization free energy of solvation -31.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds