Wall clock time and date at job start Mon Mar 30 2020 02:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30167 * 126.79911 * 2 1 4 4 O 1.20923 * 111.60513 * 180.25339 * 3 2 1 5 5 C 1.34043 * 111.56744 * 359.74171 * 4 3 2 6 6 C 1.50703 * 126.78085 * 180.02562 * 5 4 3 7 7 C 1.35454 * 106.44248 * 0.02562 * 5 4 3 8 8 C 1.50704 * 128.00479 * 179.97438 * 7 5 4 9 9 N 1.46903 * 109.47120 * 89.99862 * 8 7 5 10 10 C 1.46905 * 110.99863 * 66.04461 * 9 8 7 11 11 C 1.46895 * 110.99856 * 189.99905 * 9 8 7 12 12 C 1.52994 * 109.47270 * 169.99896 * 11 9 8 13 13 H 1.09009 * 109.47154 * 54.99975 * 12 11 9 14 14 C 1.47200 * 109.47451 * 295.00037 * 12 11 9 15 15 N 6.47562 * 114.85575 * 140.29335 * 2 1 3 16 16 C 1.52996 * 109.47347 * 174.99819 * 12 11 9 17 17 C 1.50702 * 109.47159 * 185.00014 * 16 12 11 18 18 H 1.08002 * 120.00299 * 0.02562 * 17 16 12 19 19 C 1.37884 * 119.99942 * 179.72211 * 17 16 12 20 20 N 1.31514 * 119.99698 * 0.28408 * 19 17 16 21 21 Si 1.86794 * 119.99837 * 180.27476 * 19 17 16 22 22 H 1.48496 * 109.47341 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.46983 * 120.00379 * 21 19 17 24 24 H 1.48503 * 109.47491 * 240.00192 * 21 19 17 25 25 H 1.08998 * 109.47202 * 270.16593 * 1 2 3 26 26 H 1.08991 * 109.47410 * 30.17256 * 1 2 3 27 27 H 1.09010 * 109.46784 * 150.16991 * 1 2 3 28 28 H 1.08996 * 109.46611 * 270.00350 * 6 5 4 29 29 H 1.09003 * 109.46511 * 30.00115 * 6 5 4 30 30 H 1.08992 * 109.46848 * 150.00227 * 6 5 4 31 31 H 1.08992 * 109.46810 * 329.99616 * 8 7 5 32 32 H 1.08995 * 109.46713 * 209.99900 * 8 7 5 33 33 H 1.08997 * 109.46756 * 183.95173 * 10 9 8 34 34 H 1.09001 * 109.47143 * 303.95211 * 10 9 8 35 35 H 1.08997 * 109.46972 * 63.95331 * 10 9 8 36 36 H 1.08998 * 109.47324 * 49.99898 * 11 9 8 37 37 H 1.09002 * 109.47421 * 290.00075 * 11 9 8 38 38 H 1.09004 * 109.47066 * 65.00217 * 16 12 11 39 39 H 1.08994 * 109.47405 * 305.00047 * 16 12 11 40 40 H 0.97005 * 119.99651 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2867 1.0423 0.0000 4 8 3.4537 0.7254 -0.0050 5 6 3.6025 -0.6068 -0.0034 6 6 4.9022 -1.3695 -0.0077 7 6 2.3540 -1.1320 0.0028 8 6 1.9591 -2.5864 0.0064 9 7 1.8370 -3.0573 1.3925 10 6 0.7221 -2.3907 2.0786 11 6 1.6875 -4.5178 1.4411 12 6 1.8135 -4.9955 2.8891 13 1 1.0932 -4.4639 3.5111 14 6 3.1759 -4.7272 3.3775 15 7 4.2289 -4.5204 3.7538 16 6 1.5343 -6.4983 2.9565 17 6 1.5374 -6.9457 4.3955 18 1 1.7197 -6.2298 5.1833 19 6 1.3011 -8.2680 4.7069 20 7 1.0787 -9.1398 3.7476 21 14 1.2973 -8.8211 6.4910 22 1 1.5709 -7.6566 7.3709 23 1 -0.0303 -9.3948 6.8285 24 1 2.3474 -9.8517 6.6922 25 1 -0.3633 0.0030 1.0276 26 1 -0.3634 0.8883 -0.5165 27 1 -0.3633 -0.8916 -0.5112 28 1 5.2111 -1.5550 -1.0364 29 1 5.6682 -0.7849 0.5019 30 1 4.7673 -2.3201 0.5082 31 1 2.7205 -3.1708 -0.5102 32 1 1.0028 -2.7044 -0.5030 33 1 0.6976 -2.7051 3.1220 34 1 0.8579 -1.3104 2.0277 35 1 -0.2163 -2.6622 1.5953 36 1 2.4656 -4.9831 0.8360 37 1 0.7086 -4.7960 1.0506 38 1 2.3069 -7.0363 2.4071 39 1 0.5608 -6.7073 2.5131 40 1 0.9129 -10.0701 3.9666 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112559754.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:06 Heat of formation + Delta-G solvation = 56.866847 kcal Electronic energy + Delta-G solvation = -21315.157774 eV Core-core repulsion = 18132.298115 eV Total energy + Delta-G solvation = -3182.859659 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -45.86418 -39.48684 -37.49278 -35.81660 -35.23947 -34.44390 -33.20890 -29.90858 -29.46021 -28.61379 -27.85720 -26.15532 -23.82091 -23.03873 -21.88224 -20.94079 -18.70115 -18.48760 -18.22102 -17.83776 -16.78860 -16.18796 -16.09813 -15.79937 -15.14168 -14.76492 -14.47851 -14.31542 -14.25988 -14.14740 -13.85114 -13.68608 -13.64238 -13.39363 -13.19380 -13.02269 -13.00055 -12.74287 -12.69698 -12.47840 -12.41145 -12.26985 -11.81516 -11.74149 -11.34587 -11.12220 -10.81930 -10.53197 -10.09308 -9.19691 -8.17943 -6.25241 0.52266 1.22450 1.39694 1.43568 1.53217 2.10752 2.18227 2.21784 2.42974 3.08702 3.18170 3.28542 3.40644 3.57430 3.89960 4.04475 4.16831 4.34757 4.40267 4.46885 4.60909 4.65904 4.67777 4.69830 4.73678 4.80082 4.84652 4.86578 4.92660 4.99247 5.04265 5.14025 5.20198 5.32730 5.50322 5.65841 5.81984 6.07897 6.14436 6.25307 6.86302 6.97763 7.32978 7.43322 8.92981 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030046 B = 0.003684 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.670836 B = 7599.302190 C = 7957.350589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.024 3.976 3 N -0.402 5.402 4 O 0.073 5.927 5 C -0.015 4.015 6 C -0.072 4.072 7 C -0.203 4.203 8 C 0.137 3.863 9 N -0.554 5.554 10 C 0.018 3.982 11 C 0.073 3.927 12 C 0.020 3.980 13 H 0.113 0.887 14 C 0.265 3.735 15 N -0.514 5.514 16 C 0.038 3.962 17 C -0.537 4.537 18 H 0.051 0.949 19 C 0.014 3.986 20 N -0.922 5.922 21 Si 0.944 3.056 22 H -0.271 1.271 23 H -0.273 1.273 24 H -0.285 1.285 25 H 0.089 0.911 26 H 0.079 0.921 27 H 0.098 0.902 28 H 0.109 0.891 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.051 0.949 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.004 0.996 39 H 0.037 0.963 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.023 14.802 -11.565 18.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.135 4.135 3 N -0.113 5.113 4 O 0.013 5.987 5 C -0.079 4.079 6 C -0.130 4.130 7 C -0.207 4.207 8 C 0.009 3.991 9 N -0.278 5.278 10 C -0.130 4.130 11 C -0.055 4.055 12 C -0.001 4.001 13 H 0.130 0.870 14 C -0.051 4.051 15 N -0.191 5.191 16 C -0.001 4.001 17 C -0.576 4.576 18 H 0.069 0.931 19 C -0.185 4.185 20 N -0.562 5.562 21 Si 0.771 3.229 22 H -0.196 1.196 23 H -0.199 1.199 24 H -0.212 1.212 25 H 0.107 0.893 26 H 0.098 0.902 27 H 0.116 0.884 28 H 0.127 0.873 29 H 0.106 0.894 30 H 0.108 0.892 31 H 0.114 0.886 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.102 0.898 37 H 0.093 0.907 38 H 0.023 0.977 39 H 0.055 0.945 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.233 16.385 -10.779 19.614 hybrid contribution -1.002 -1.539 0.653 1.949 sum -1.235 14.846 -10.125 18.012 Atomic orbital electron populations 1.20376 0.84204 1.04671 1.04201 1.23945 1.00085 0.88334 1.01114 1.73811 0.89756 1.25160 1.22563 1.84747 1.21645 1.23573 1.68712 1.24805 0.99598 0.83072 1.00452 1.20457 0.88921 0.98417 1.05159 1.20973 0.91525 0.97531 1.10694 1.20282 1.01974 0.87709 0.89086 1.61928 1.45012 1.05279 1.15627 1.22559 0.91836 0.99139 0.99471 1.22093 1.02873 0.86705 0.93847 1.19205 0.84662 0.99252 0.97022 0.86960 1.29402 0.94833 0.89743 0.91081 1.81030 1.14066 1.12613 1.11432 1.18994 0.97365 0.87877 0.95819 1.21579 1.48129 0.94048 0.93801 0.93074 1.25650 0.95026 0.97145 1.00672 1.70026 1.49441 1.03365 1.33351 0.85705 0.77858 0.78218 0.81153 1.19568 1.19858 1.21154 0.89289 0.90241 0.88364 0.87297 0.89368 0.89214 0.88560 0.91417 0.91789 0.91850 0.93101 0.89772 0.90658 0.97743 0.94498 0.92741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.17 9.53 71.24 0.68 -0.49 16 2 C 0.02 0.54 6.41 43.58 0.28 0.82 16 3 N -0.40 -10.77 12.07 -49.57 -0.60 -11.37 16 4 O 0.07 1.89 11.20 71.60 0.80 2.69 16 5 C -0.02 -0.33 7.49 25.04 0.19 -0.15 16 6 C -0.07 -1.18 10.25 71.24 0.73 -0.45 16 7 C -0.20 -4.34 5.11 -19.73 -0.10 -4.44 16 8 C 0.14 2.53 5.21 85.56 0.45 2.98 16 9 N -0.55 -12.59 4.45 -927.07 -4.13 -16.72 16 10 C 0.02 0.37 8.75 127.69 1.12 1.48 16 11 C 0.07 1.83 4.32 86.30 0.37 2.20 16 12 C 0.02 0.69 2.13 -12.60 -0.03 0.66 16 13 H 0.11 3.57 6.34 -2.38 -0.02 3.56 16 14 C 0.27 10.52 13.67 89.43 1.22 11.74 16 15 N -0.51 -22.40 18.55 20.02 0.37 -22.02 16 16 C 0.04 1.68 4.42 29.85 0.13 1.81 16 17 C -0.54 -27.80 8.60 25.60 0.22 -27.58 16 18 H 0.05 2.65 7.59 -2.91 -0.02 2.63 16 19 C 0.01 0.76 5.46 84.66 0.46 1.22 16 20 N -0.92 -51.68 13.29 21.45 0.28 -51.39 16 21 Si 0.94 42.78 29.54 68.60 2.03 44.81 16 22 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 23 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 24 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 25 H 0.09 1.24 7.25 -2.39 -0.02 1.23 16 26 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.10 1.13 7.65 -2.38 -0.02 1.11 16 28 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.09 1.68 8.05 -2.39 -0.02 1.66 16 31 H 0.10 1.61 7.87 -2.39 -0.02 1.59 16 32 H 0.07 1.02 7.63 -2.39 -0.02 1.00 16 33 H 0.06 1.46 6.37 -2.39 -0.02 1.44 16 34 H 0.06 1.33 4.94 -2.39 -0.01 1.32 16 35 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.08 2.06 7.93 -2.39 -0.02 2.04 16 37 H 0.08 1.62 8.12 -2.39 -0.02 1.60 16 38 H 0.00 0.20 8.14 -2.38 -0.02 0.18 16 39 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.26 14.03 8.31 -92.70 -0.77 13.26 16 Total: -1.00 -65.83 338.67 5.52 -60.31 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: 1.04 Total: 3.89 kcal Atomic # 6 Polarization: -15.91 SS G_CDS: 5.72 Total: -10.19 kcal Atomic # 7 Polarization: -97.44 SS G_CDS: -4.07 Total: -101.51 kcal Atomic # 8 Polarization: 1.89 SS G_CDS: 0.80 Total: 2.69 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -65.83 5.52 -60.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112559754.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.175 kcal (2) G-P(sol) polarization free energy of solvation -65.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds