Wall clock time and date at job start Mon Mar 30 2020 02:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30176 * 126.80113 * 2 1 4 4 O 1.20923 * 111.60112 * 180.25608 * 3 2 1 5 5 C 1.34040 * 111.56820 * 359.73853 * 4 3 2 6 6 C 1.50698 * 126.77534 * 180.02562 * 5 4 3 7 7 C 1.35449 * 106.44860 * 0.02562 * 5 4 3 8 8 C 1.50697 * 128.00783 * 179.97438 * 7 5 4 9 9 N 1.46903 * 109.46688 * 90.00186 * 8 7 5 10 10 C 1.46906 * 111.00125 * 66.04616 * 9 8 7 11 11 C 1.46901 * 110.99880 * 189.99591 * 9 8 7 12 12 C 1.53003 * 109.46836 * 75.63255 * 11 9 8 13 13 H 1.09001 * 109.46819 * 305.48881 * 12 11 9 14 14 C 1.47192 * 109.47347 * 65.48979 * 12 11 9 15 15 N 6.40654 * 119.74426 * 145.90990 * 2 1 3 16 16 C 1.53000 * 109.47333 * 185.49506 * 12 11 9 17 17 C 1.50697 * 109.47425 * 174.99904 * 16 12 11 18 18 H 1.07999 * 120.00131 * 359.97438 * 17 16 12 19 19 C 1.37877 * 119.99832 * 179.97438 * 17 16 12 20 20 N 1.31515 * 120.00395 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99649 * 179.97438 * 19 17 16 22 22 H 1.48510 * 109.46690 * 90.00156 * 21 19 17 23 23 H 1.48497 * 109.46994 * 209.99973 * 21 19 17 24 24 H 1.48492 * 109.47438 * 330.00631 * 21 19 17 25 25 H 1.08998 * 109.46572 * 270.16598 * 1 2 3 26 26 H 1.08993 * 109.46906 * 30.16664 * 1 2 3 27 27 H 1.08999 * 109.46955 * 150.16654 * 1 2 3 28 28 H 1.09003 * 109.47658 * 270.00238 * 6 5 4 29 29 H 1.09002 * 109.47317 * 30.00616 * 6 5 4 30 30 H 1.09000 * 109.47272 * 150.00537 * 6 5 4 31 31 H 1.08998 * 109.47597 * 330.00522 * 8 7 5 32 32 H 1.09000 * 109.47436 * 209.99891 * 8 7 5 33 33 H 1.08998 * 109.47160 * 186.91782 * 10 9 8 34 34 H 1.08997 * 109.46875 * 306.92177 * 10 9 8 35 35 H 1.08997 * 109.46736 * 66.92452 * 10 9 8 36 36 H 1.08995 * 109.47188 * 315.63040 * 11 9 8 37 37 H 1.09001 * 109.46952 * 195.62632 * 11 9 8 38 38 H 1.09000 * 109.46812 * 295.00031 * 16 12 11 39 39 H 1.09001 * 109.46984 * 54.99460 * 16 12 11 40 40 H 0.96991 * 120.00080 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7253 -0.0050 5 6 3.6025 -0.6068 -0.0034 6 6 4.9022 -1.3696 -0.0078 7 6 2.3540 -1.1321 0.0029 8 6 1.9591 -2.5864 0.0065 9 7 1.8371 -3.0571 1.3927 10 6 0.7221 -2.3905 2.0788 11 6 1.6874 -4.5176 1.4414 12 6 3.0417 -5.1782 1.1759 13 1 3.4485 -4.8073 0.2352 14 6 3.9686 -4.8552 2.2727 15 7 4.6855 -4.6066 3.1177 16 6 2.8613 -6.6951 1.0906 17 6 4.1704 -7.3360 0.7080 18 1 5.0437 -6.7227 0.5418 19 6 4.2533 -8.7054 0.5701 20 7 3.1898 -9.4522 0.7720 21 14 5.8760 -9.4997 0.0951 22 1 6.6454 -9.8259 1.3228 23 1 5.6123 -10.7451 -0.6694 24 1 6.6601 -8.5595 -0.7452 25 1 -0.3632 0.0030 1.0277 26 1 -0.3633 0.8884 -0.5164 27 1 -0.3633 -0.8915 -0.5112 28 1 5.2112 -1.5552 -1.0365 29 1 5.6682 -0.7851 0.5019 30 1 4.7673 -2.3202 0.5081 31 1 2.7205 -3.1710 -0.5100 32 1 1.0027 -2.7045 -0.5029 33 1 0.7294 -2.6637 3.1340 34 1 0.8300 -1.3102 1.9823 35 1 -0.2202 -2.7032 1.6291 36 1 0.9730 -4.8352 0.6819 37 1 1.3259 -4.8131 2.4264 38 1 2.5388 -7.0776 2.0590 39 1 2.1083 -6.9297 0.3383 40 1 3.2482 -10.4155 0.6753 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112559756.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:09 Heat of formation + Delta-G solvation = 74.981985 kcal Electronic energy + Delta-G solvation = -21535.153096 eV Core-core repulsion = 18353.078968 eV Total energy + Delta-G solvation = -3182.074128 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.92565 -38.37677 -36.07227 -34.63529 -33.66507 -33.39137 -31.65505 -29.13496 -28.45784 -27.40490 -26.77289 -24.60346 -22.39270 -21.76501 -20.93571 -20.06070 -17.72579 -17.10413 -16.72380 -16.47887 -15.36275 -15.02669 -14.87458 -14.44800 -14.15256 -13.63150 -13.58357 -13.27025 -13.05330 -12.90125 -12.80095 -12.65828 -12.41040 -12.18628 -11.96193 -11.88998 -11.64941 -11.49123 -11.23398 -11.07011 -10.93415 -10.73560 -10.55423 -10.25042 -9.92333 -9.57999 -9.26555 -9.15908 -8.48631 -8.27429 -6.12616 -4.15924 1.45432 2.12738 3.10149 3.27765 3.34701 3.37255 3.69733 3.80738 4.04314 4.12907 4.38890 4.41075 4.77410 4.86235 4.90875 5.16054 5.20958 5.25824 5.28218 5.33824 5.41500 5.43190 5.47837 5.55017 5.59955 5.71830 5.75287 5.86541 5.89624 5.96016 5.96808 6.12443 6.30198 6.44760 7.05382 7.08453 7.38696 7.49125 7.82393 8.19695 8.25492 8.55459 8.88800 9.49890 10.98289 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024194 B = 0.004193 C = 0.003923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.028641 B = 6675.520023 C = 7135.199716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.023 3.977 3 N -0.373 5.373 4 O 0.090 5.910 5 C -0.008 4.008 6 C -0.077 4.077 7 C -0.193 4.193 8 C 0.128 3.872 9 N -0.541 5.541 10 C 0.023 3.977 11 C 0.061 3.939 12 C 0.012 3.988 13 H 0.099 0.901 14 C 0.255 3.745 15 N -0.479 5.479 16 C 0.031 3.969 17 C -0.526 4.526 18 H 0.057 0.943 19 C 0.063 3.937 20 N -0.892 5.892 21 Si 0.890 3.110 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.272 1.272 25 H 0.080 0.920 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.050 0.950 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.027 0.973 36 H 0.058 0.942 37 H 0.081 0.919 38 H 0.026 0.974 39 H 0.037 0.963 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.200 15.320 -3.976 16.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.136 4.136 3 N -0.080 5.080 4 O 0.027 5.973 5 C -0.072 4.072 6 C -0.135 4.135 7 C -0.198 4.198 8 C 0.000 4.000 9 N -0.265 5.265 10 C -0.125 4.125 11 C -0.068 4.068 12 C -0.010 4.010 13 H 0.116 0.884 14 C -0.062 4.062 15 N -0.156 5.156 16 C -0.008 4.008 17 C -0.564 4.564 18 H 0.075 0.925 19 C -0.139 4.139 20 N -0.530 5.530 21 Si 0.718 3.282 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.197 1.197 25 H 0.098 0.902 26 H 0.093 0.907 27 H 0.099 0.901 28 H 0.107 0.893 29 H 0.100 0.900 30 H 0.118 0.882 31 H 0.112 0.888 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.046 0.954 36 H 0.076 0.924 37 H 0.099 0.901 38 H 0.044 0.956 39 H 0.055 0.945 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.961 16.956 -2.452 17.836 hybrid contribution -0.225 -1.645 -0.932 1.904 sum -5.186 15.311 -3.384 16.516 Atomic orbital electron populations 1.20225 0.86309 1.03563 1.03249 1.23408 0.98678 0.88748 1.02799 1.73816 0.89369 1.24022 1.20802 1.84779 1.21558 1.22857 1.68102 1.24309 0.98483 0.83282 1.01085 1.20413 0.89757 0.99280 1.04014 1.20785 0.91547 0.97063 1.10362 1.20358 1.01099 0.88401 0.90105 1.62017 1.43873 1.06086 1.14486 1.22477 0.91326 0.99530 0.99210 1.22284 0.96594 0.85225 1.02667 1.19230 0.89403 1.00614 0.91790 0.88367 1.28840 0.93053 0.90538 0.93723 1.80986 1.11020 1.11777 1.11767 1.19179 0.98322 0.84647 0.98638 1.21122 0.95627 0.91992 1.47669 0.92482 1.24943 0.96420 0.97405 0.95112 1.69931 1.28522 1.05408 1.49160 0.86610 0.83952 0.78941 0.78680 1.20637 1.21120 1.19715 0.90168 0.90732 0.90124 0.89349 0.90013 0.88234 0.88752 0.93177 0.91474 0.91552 0.95401 0.92372 0.90082 0.95589 0.94453 0.92781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.66 9.53 36.01 0.34 -0.32 16 2 C 0.02 0.28 6.40 -82.09 -0.53 -0.25 16 3 N -0.37 -5.18 12.07 33.42 0.40 -4.77 16 4 O 0.09 1.22 11.20 17.18 0.19 1.41 16 5 C -0.01 -0.09 7.49 -35.30 -0.26 -0.36 16 6 C -0.08 -0.78 10.25 36.00 0.37 -0.41 16 7 C -0.19 -2.33 5.12 -104.42 -0.53 -2.86 16 8 C 0.13 1.45 5.04 -4.98 -0.03 1.42 16 9 N -0.54 -6.82 4.40 -244.37 -1.07 -7.90 16 10 C 0.02 0.25 9.05 60.07 0.54 0.79 16 11 C 0.06 0.83 4.36 -3.82 -0.02 0.82 16 12 C 0.01 0.20 2.27 -93.41 -0.21 -0.01 16 13 H 0.10 1.55 6.64 -51.93 -0.34 1.20 16 14 C 0.26 5.05 13.68 -20.77 -0.28 4.76 16 15 N -0.48 -10.38 18.54 42.14 0.78 -9.60 16 16 C 0.03 0.68 4.42 -27.88 -0.12 0.55 16 17 C -0.53 -13.47 8.60 -34.44 -0.30 -13.77 16 18 H 0.06 1.45 7.59 -52.49 -0.40 1.05 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 20 N -0.89 -24.92 13.29 55.43 0.74 -24.19 16 21 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 25 H 0.08 0.63 7.19 -51.93 -0.37 0.26 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.08 0.60 7.65 -51.93 -0.40 0.20 16 28 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.10 1.15 8.05 -51.93 -0.42 0.73 16 31 H 0.09 1.05 6.49 -51.93 -0.34 0.71 16 32 H 0.05 0.50 7.63 -51.93 -0.40 0.11 16 33 H 0.07 0.75 8.12 -51.93 -0.42 0.33 16 34 H 0.07 0.73 4.65 -51.93 -0.24 0.49 16 35 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.06 0.72 8.00 -51.93 -0.42 0.30 16 37 H 0.08 1.14 7.92 -51.93 -0.41 0.72 16 38 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 339.12 15.07 5.11 5.11 Total: -1.00 -30.57 339.12 -5.82 -36.39 By element: Atomic # 1 Polarization: 1.66 SS G_CDS: -5.83 Total: -4.17 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: -1.12 Total: -8.03 kcal Atomic # 7 Polarization: -47.30 SS G_CDS: 0.85 Total: -46.45 kcal Atomic # 8 Polarization: 1.22 SS G_CDS: 0.19 Total: 1.41 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.57 -5.82 -36.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112559756.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.376 kcal (2) G-P(sol) polarization free energy of solvation -30.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds