Wall clock time and date at job start Mon Mar 30 2020 02:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30176 * 126.80113 * 2 1 4 4 O 1.20923 * 111.60112 * 180.25608 * 3 2 1 5 5 C 1.34040 * 111.56820 * 359.73853 * 4 3 2 6 6 C 1.50698 * 126.77534 * 180.02562 * 5 4 3 7 7 C 1.35449 * 106.44860 * 0.02562 * 5 4 3 8 8 C 1.50697 * 128.00783 * 179.97438 * 7 5 4 9 9 N 1.46903 * 109.46688 * 90.00186 * 8 7 5 10 10 C 1.46906 * 111.00125 * 66.04616 * 9 8 7 11 11 C 1.46901 * 110.99880 * 189.99591 * 9 8 7 12 12 C 1.53003 * 109.46836 * 75.63255 * 11 9 8 13 13 H 1.09001 * 109.46819 * 305.48881 * 12 11 9 14 14 C 1.47192 * 109.47347 * 65.48979 * 12 11 9 15 15 N 6.40654 * 119.74426 * 145.90990 * 2 1 3 16 16 C 1.53000 * 109.47333 * 185.49506 * 12 11 9 17 17 C 1.50697 * 109.47425 * 174.99904 * 16 12 11 18 18 H 1.07999 * 120.00131 * 359.97438 * 17 16 12 19 19 C 1.37877 * 119.99832 * 179.97438 * 17 16 12 20 20 N 1.31515 * 120.00395 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99649 * 179.97438 * 19 17 16 22 22 H 1.48510 * 109.46690 * 90.00156 * 21 19 17 23 23 H 1.48497 * 109.46994 * 209.99973 * 21 19 17 24 24 H 1.48492 * 109.47438 * 330.00631 * 21 19 17 25 25 H 1.08998 * 109.46572 * 270.16598 * 1 2 3 26 26 H 1.08993 * 109.46906 * 30.16664 * 1 2 3 27 27 H 1.08999 * 109.46955 * 150.16654 * 1 2 3 28 28 H 1.09003 * 109.47658 * 270.00238 * 6 5 4 29 29 H 1.09002 * 109.47317 * 30.00616 * 6 5 4 30 30 H 1.09000 * 109.47272 * 150.00537 * 6 5 4 31 31 H 1.08998 * 109.47597 * 330.00522 * 8 7 5 32 32 H 1.09000 * 109.47436 * 209.99891 * 8 7 5 33 33 H 1.08998 * 109.47160 * 186.91782 * 10 9 8 34 34 H 1.08997 * 109.46875 * 306.92177 * 10 9 8 35 35 H 1.08997 * 109.46736 * 66.92452 * 10 9 8 36 36 H 1.08995 * 109.47188 * 315.63040 * 11 9 8 37 37 H 1.09001 * 109.46952 * 195.62632 * 11 9 8 38 38 H 1.09000 * 109.46812 * 295.00031 * 16 12 11 39 39 H 1.09001 * 109.46984 * 54.99460 * 16 12 11 40 40 H 0.96991 * 120.00080 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7253 -0.0050 5 6 3.6025 -0.6068 -0.0034 6 6 4.9022 -1.3696 -0.0078 7 6 2.3540 -1.1321 0.0029 8 6 1.9591 -2.5864 0.0065 9 7 1.8371 -3.0571 1.3927 10 6 0.7221 -2.3905 2.0788 11 6 1.6874 -4.5176 1.4414 12 6 3.0417 -5.1782 1.1759 13 1 3.4485 -4.8073 0.2352 14 6 3.9686 -4.8552 2.2727 15 7 4.6855 -4.6066 3.1177 16 6 2.8613 -6.6951 1.0906 17 6 4.1704 -7.3360 0.7080 18 1 5.0437 -6.7227 0.5418 19 6 4.2533 -8.7054 0.5701 20 7 3.1898 -9.4522 0.7720 21 14 5.8760 -9.4997 0.0951 22 1 6.6454 -9.8259 1.3228 23 1 5.6123 -10.7451 -0.6694 24 1 6.6601 -8.5595 -0.7452 25 1 -0.3632 0.0030 1.0277 26 1 -0.3633 0.8884 -0.5164 27 1 -0.3633 -0.8915 -0.5112 28 1 5.2112 -1.5552 -1.0365 29 1 5.6682 -0.7851 0.5019 30 1 4.7673 -2.3202 0.5081 31 1 2.7205 -3.1710 -0.5100 32 1 1.0027 -2.7045 -0.5029 33 1 0.7294 -2.6637 3.1340 34 1 0.8300 -1.3102 1.9823 35 1 -0.2202 -2.7032 1.6291 36 1 0.9730 -4.8352 0.6819 37 1 1.3259 -4.8131 2.4264 38 1 2.5388 -7.0776 2.0590 39 1 2.1083 -6.9297 0.3383 40 1 3.2482 -10.4155 0.6753 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112559756.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:08 Heat of formation + Delta-G solvation = 56.946198 kcal Electronic energy + Delta-G solvation = -21535.935186 eV Core-core repulsion = 18353.078968 eV Total energy + Delta-G solvation = -3182.856218 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -45.85269 -39.48321 -37.46871 -35.78010 -35.23954 -34.40554 -33.29342 -29.91076 -29.43812 -28.80483 -27.68230 -26.00004 -23.68337 -23.28912 -21.87134 -20.94579 -18.71737 -18.43538 -18.25690 -17.80047 -16.72583 -16.19887 -16.01242 -15.79395 -15.14345 -14.71762 -14.49533 -14.40990 -14.21390 -14.08254 -13.87085 -13.68291 -13.60463 -13.39032 -13.19392 -13.00987 -12.94507 -12.79110 -12.59940 -12.57280 -12.44289 -12.26081 -11.89310 -11.69124 -11.33694 -11.07286 -10.81881 -10.51299 -10.08335 -9.20004 -8.15487 -6.22843 0.52885 1.23668 1.42863 1.45959 1.53995 2.13421 2.20357 2.22628 2.44967 3.08164 3.20957 3.29269 3.42320 3.57774 3.91219 4.03508 4.18786 4.35418 4.42266 4.45031 4.59777 4.66620 4.67002 4.69351 4.75799 4.79956 4.81018 4.90664 4.96125 5.00946 5.03680 5.07714 5.18610 5.33285 5.52742 5.67297 5.84060 6.07930 6.14515 6.26813 6.88978 7.00316 7.33203 7.45812 8.95389 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024194 B = 0.004193 C = 0.003923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.028641 B = 6675.520023 C = 7135.199716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.025 3.975 3 N -0.402 5.402 4 O 0.073 5.927 5 C -0.014 4.014 6 C -0.075 4.075 7 C -0.201 4.201 8 C 0.130 3.870 9 N -0.554 5.554 10 C 0.025 3.975 11 C 0.072 3.928 12 C 0.022 3.978 13 H 0.119 0.881 14 C 0.267 3.733 15 N -0.515 5.515 16 C 0.037 3.963 17 C -0.535 4.535 18 H 0.056 0.944 19 C 0.013 3.987 20 N -0.924 5.924 21 Si 0.943 3.057 22 H -0.286 1.286 23 H -0.281 1.281 24 H -0.262 1.262 25 H 0.090 0.910 26 H 0.079 0.921 27 H 0.097 0.903 28 H 0.108 0.892 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.049 0.951 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.000 1.000 39 H 0.037 0.963 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.765 15.751 -4.981 17.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.134 4.134 3 N -0.112 5.112 4 O 0.013 5.987 5 C -0.078 4.078 6 C -0.132 4.132 7 C -0.206 4.206 8 C 0.002 3.998 9 N -0.279 5.279 10 C -0.123 4.123 11 C -0.057 4.057 12 C 0.001 3.999 13 H 0.137 0.863 14 C -0.049 4.049 15 N -0.193 5.193 16 C -0.002 4.002 17 C -0.573 4.573 18 H 0.074 0.926 19 C -0.186 4.186 20 N -0.564 5.564 21 Si 0.770 3.230 22 H -0.213 1.213 23 H -0.207 1.207 24 H -0.186 1.186 25 H 0.109 0.891 26 H 0.098 0.902 27 H 0.116 0.884 28 H 0.127 0.873 29 H 0.107 0.893 30 H 0.105 0.895 31 H 0.114 0.886 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.067 0.933 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.018 0.982 39 H 0.056 0.944 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.505 17.401 -3.464 18.577 hybrid contribution -0.061 -1.756 -0.605 1.858 sum -5.566 15.645 -4.069 17.097 Atomic orbital electron populations 1.20381 0.84091 1.04704 1.04219 1.23946 1.00100 0.88240 1.01128 1.73810 0.89728 1.25130 1.22549 1.84747 1.21681 1.23475 1.68754 1.24728 0.99476 0.83078 1.00502 1.20458 0.89188 0.98353 1.05204 1.20953 0.91490 0.97498 1.10623 1.20402 1.02151 0.87743 0.89456 1.61902 1.45115 1.05260 1.15611 1.22467 0.91690 0.99253 0.98862 1.22098 0.94447 0.85974 1.03187 1.19196 0.91089 0.97776 0.91883 0.86336 1.29340 0.92513 0.89590 0.93497 1.80989 1.12356 1.12917 1.13039 1.19004 0.96637 0.87637 0.96915 1.21560 0.96981 0.92234 1.46503 0.92581 1.25662 0.99094 0.98284 0.95539 1.70022 1.30201 1.05569 1.50647 0.85769 0.80670 0.78410 0.78193 1.21275 1.20652 1.18587 0.89145 0.90209 0.88389 0.87346 0.89316 0.89522 0.88619 0.91221 0.92110 0.91627 0.93258 0.90266 0.90490 0.98204 0.94443 0.92834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.14 9.53 71.24 0.68 -0.46 16 2 C 0.03 0.56 6.40 43.58 0.28 0.84 16 3 N -0.40 -10.86 12.07 -49.55 -0.60 -11.45 16 4 O 0.07 1.95 11.20 71.63 0.80 2.75 16 5 C -0.01 -0.32 7.49 25.04 0.19 -0.13 16 6 C -0.07 -1.42 10.25 71.24 0.73 -0.69 16 7 C -0.20 -4.48 5.12 -19.74 -0.10 -4.58 16 8 C 0.13 2.57 5.04 85.56 0.43 3.00 16 9 N -0.55 -12.65 4.40 -927.04 -4.08 -16.72 16 10 C 0.02 0.48 9.05 127.69 1.16 1.64 16 11 C 0.07 1.80 4.36 86.30 0.38 2.17 16 12 C 0.02 0.73 2.27 -12.60 -0.03 0.71 16 13 H 0.12 3.44 6.64 -2.39 -0.02 3.43 16 14 C 0.27 10.31 13.68 89.44 1.22 11.53 16 15 N -0.52 -22.16 18.54 20.00 0.37 -21.79 16 16 C 0.04 1.60 4.42 29.85 0.13 1.73 16 17 C -0.53 -26.99 8.60 25.60 0.22 -26.77 16 18 H 0.06 2.79 7.59 -2.91 -0.02 2.76 16 19 C 0.01 0.69 5.46 84.65 0.46 1.15 16 20 N -0.92 -51.65 13.29 21.45 0.28 -51.37 16 21 Si 0.94 42.12 29.54 68.60 2.03 44.14 16 22 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 23 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 24 H -0.26 -11.12 7.11 99.48 0.71 -10.42 16 25 H 0.09 1.18 7.19 -2.39 -0.02 1.16 16 26 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.10 1.11 7.65 -2.39 -0.02 1.09 16 28 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.09 1.90 8.05 -2.39 -0.02 1.88 16 31 H 0.10 1.86 6.49 -2.39 -0.02 1.84 16 32 H 0.07 1.12 7.63 -2.39 -0.02 1.10 16 33 H 0.06 1.25 8.12 -2.39 -0.02 1.23 16 34 H 0.07 1.29 4.65 -2.39 -0.01 1.28 16 35 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.08 1.69 8.00 -2.39 -0.02 1.67 16 37 H 0.08 2.02 7.92 -2.39 -0.02 2.00 16 38 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 39 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 Total: -1.00 -64.98 339.12 5.60 -59.38 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: 1.04 Total: 4.92 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: 5.75 Total: -9.86 kcal Atomic # 7 Polarization: -97.32 SS G_CDS: -4.02 Total: -101.34 kcal Atomic # 8 Polarization: 1.95 SS G_CDS: 0.80 Total: 2.75 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.14 kcal Total: -64.98 5.60 -59.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112559756.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.328 kcal (2) G-P(sol) polarization free energy of solvation -64.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds