Wall clock time and date at job start Mon Mar 30 2020 02:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30444 * 125.98365 * 2 1 4 4 N 1.39941 * 108.89541 * 180.02562 * 3 2 1 5 5 C 1.46496 * 125.75217 * 179.97438 * 4 3 2 6 6 C 1.34257 * 108.48860 * 0.23033 * 4 3 2 7 7 C 1.38039 * 107.41835 * 359.63746 * 6 4 3 8 8 C 1.47433 * 126.41359 * 180.13573 * 7 6 4 9 9 O 1.21600 * 119.99918 * 152.22982 * 8 7 6 10 10 N 1.34774 * 120.00185 * 332.23030 * 8 7 6 11 11 C 1.46499 * 120.00081 * 5.57038 * 10 8 7 12 12 C 1.50699 * 109.47001 * 97.23092 * 11 10 8 13 13 H 1.08000 * 120.00328 * 0.02562 * 12 11 10 14 14 C 1.37881 * 120.00032 * 180.02562 * 12 11 10 15 15 N 1.31515 * 120.00095 * 180.02562 * 14 12 11 16 16 Si 1.86807 * 119.99748 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.47118 * 90.00555 * 16 14 12 18 18 H 1.48503 * 109.47007 * 210.00363 * 16 14 12 19 19 H 1.48500 * 109.47226 * 330.00485 * 16 14 12 20 20 C 1.46501 * 119.99950 * 185.57247 * 10 8 7 21 21 C 1.53001 * 109.47140 * 94.55785 * 20 10 8 22 22 C 1.52999 * 117.49712 * 240.93761 * 21 20 10 23 23 C 1.53004 * 117.49948 * 172.27955 * 21 20 10 24 24 H 1.08993 * 109.47360 * 89.97598 * 1 2 3 25 25 H 1.09004 * 109.46560 * 209.97458 * 1 2 3 26 26 H 1.08999 * 109.47295 * 329.96821 * 1 2 3 27 27 H 1.09001 * 109.47489 * 90.03160 * 5 4 3 28 28 H 1.09008 * 109.47163 * 210.02453 * 5 4 3 29 29 H 1.08996 * 109.47702 * 330.02193 * 5 4 3 30 30 H 1.07999 * 126.29072 * 179.74770 * 6 4 3 31 31 H 1.09000 * 109.47425 * 217.23266 * 11 10 8 32 32 H 1.09001 * 109.46802 * 337.23199 * 11 10 8 33 33 H 0.96999 * 119.99563 * 179.97438 * 15 14 12 34 34 H 1.09000 * 109.46953 * 214.55451 * 20 10 8 35 35 H 1.08999 * 109.47379 * 334.55755 * 20 10 8 36 36 H 1.09000 * 115.54770 * 26.61058 * 21 20 10 37 37 H 1.09002 * 117.49884 * 0.02562 * 22 21 20 38 38 H 1.09001 * 117.49638 * 145.01902 * 22 21 20 39 39 H 1.08995 * 117.50038 * 214.98050 * 23 21 20 40 40 H 1.09004 * 117.49637 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2734 1.0555 0.0000 4 7 3.6111 0.6443 -0.0006 5 6 4.7786 1.5292 -0.0013 6 6 3.6439 -0.6978 -0.0061 7 6 2.3373 -1.1431 -0.0006 8 6 1.8917 -2.5485 -0.0009 9 8 0.8220 -2.8472 0.4943 10 7 2.6698 -3.5021 -0.5501 11 6 4.0096 -3.1639 -1.0366 12 6 5.0293 -3.5123 0.0169 13 1 4.7113 -3.9430 0.9548 14 6 6.3684 -3.2813 -0.2167 15 7 7.2584 -3.5858 0.7024 16 14 6.9186 -2.5370 -1.8394 17 1 6.9383 -1.0566 -1.7236 18 1 8.2811 -3.0257 -2.1714 19 1 5.9739 -2.9370 -2.9131 20 6 2.1758 -4.8769 -0.6604 21 6 1.5562 -5.0867 -2.0436 22 6 0.0744 -5.4626 -2.1042 23 6 1.1437 -6.5100 -2.4244 24 1 -0.3634 0.0004 -1.0276 25 1 -0.3632 -0.8903 0.5135 26 1 -0.3634 0.8897 0.5143 27 1 5.0691 1.7484 1.0262 28 1 5.6054 1.0395 -0.5159 29 1 4.5303 2.4580 -0.5148 30 1 4.5297 -1.3156 -0.0117 31 1 4.2191 -3.7277 -1.9456 32 1 4.0593 -2.0965 -1.2515 33 1 8.2005 -3.4235 0.5379 34 1 3.0038 -5.5725 -0.5239 35 1 1.4217 -5.0547 0.1062 36 1 1.9460 -4.4468 -2.8352 37 1 -0.4592 -5.5600 -1.1587 38 1 -0.5107 -5.0702 -2.9360 39 1 1.2617 -6.8063 -3.4667 40 1 1.3134 -7.2968 -1.6894 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113171427.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:28 Heat of formation + Delta-G solvation = 77.778454 kcal Electronic energy + Delta-G solvation = -22244.228010 eV Core-core repulsion = 19062.275147 eV Total energy + Delta-G solvation = -3181.952864 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.99875 -38.77060 -36.83253 -34.95461 -33.53640 -32.59463 -30.41787 -29.12015 -28.26793 -26.66025 -25.07745 -22.75691 -22.11692 -21.52458 -20.48763 -19.63901 -18.45560 -17.13252 -16.38527 -16.04367 -15.53460 -15.26779 -14.64316 -14.33159 -14.15381 -13.85962 -13.51422 -13.26013 -12.89602 -12.87751 -12.59596 -12.23327 -12.09649 -11.88542 -11.78981 -11.41886 -11.28022 -11.18461 -10.92796 -10.76948 -10.44431 -10.29921 -10.14328 -9.72115 -9.57777 -9.07126 -8.96687 -8.78339 -8.10127 -7.69285 -6.37111 -4.39153 2.13136 2.66436 2.78214 2.97748 3.12881 3.15270 3.81734 4.05748 4.09331 4.17034 4.75581 4.91249 5.07670 5.22139 5.26436 5.30243 5.31918 5.39719 5.54878 5.64072 5.74753 5.80291 5.84692 5.95177 6.12337 6.13547 6.17516 6.25329 6.28638 6.34685 6.37634 6.44116 6.63383 6.65627 6.98296 7.26803 7.30454 7.44498 8.02872 8.10884 8.40365 8.73536 9.04473 9.21617 10.74756 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.010987 B = 0.009482 C = 0.005673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2547.964865 B = 2952.377331 C = 4934.057832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.122 3.878 3 N -0.319 5.319 4 N -0.374 5.374 5 C 0.100 3.900 6 C 0.108 3.892 7 C -0.290 4.290 8 C 0.600 3.400 9 O -0.567 6.567 10 N -0.586 5.586 11 C 0.191 3.809 12 C -0.542 4.542 13 H 0.083 0.917 14 C 0.077 3.923 15 N -0.882 5.882 16 Si 0.859 3.141 17 H -0.273 1.273 18 H -0.279 1.279 19 H -0.260 1.260 20 C 0.151 3.849 21 C -0.161 4.161 22 C -0.176 4.176 23 C -0.180 4.180 24 H 0.071 0.929 25 H 0.095 0.905 26 H 0.067 0.933 27 H 0.076 0.924 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.218 0.782 31 H 0.032 0.968 32 H 0.041 0.959 33 H 0.269 0.731 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.101 0.899 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.477 3.889 -5.544 9.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.046 4.046 3 N -0.142 5.142 4 N -0.152 5.152 5 C -0.042 4.042 6 C -0.041 4.041 7 C -0.305 4.305 8 C 0.389 3.611 9 O -0.449 6.449 10 N -0.315 5.315 11 C 0.070 3.930 12 C -0.581 4.581 13 H 0.101 0.899 14 C -0.128 4.128 15 N -0.519 5.519 16 Si 0.685 3.315 17 H -0.198 1.198 18 H -0.204 1.204 19 H -0.184 1.184 20 C 0.028 3.972 21 C -0.180 4.180 22 C -0.213 4.213 23 C -0.217 4.217 24 H 0.090 0.910 25 H 0.114 0.886 26 H 0.086 0.914 27 H 0.095 0.905 28 H 0.108 0.892 29 H 0.106 0.894 30 H 0.233 0.767 31 H 0.050 0.950 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.120 0.880 37 H 0.114 0.886 38 H 0.105 0.895 39 H 0.108 0.892 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.621 5.107 -5.240 9.868 hybrid contribution 0.927 -0.481 -0.905 1.382 sum -5.695 4.625 -6.145 9.570 Atomic orbital electron populations 1.20280 0.86372 1.03956 1.02767 1.22321 0.96773 0.89155 0.96305 1.76970 0.86458 1.22973 1.27758 1.48277 1.05549 1.05281 1.56130 1.21902 0.84296 0.94324 1.03637 1.24690 1.01252 0.84198 0.93987 1.20164 0.92147 0.94489 1.23653 1.17198 0.83221 0.83728 0.76936 1.90619 1.23932 1.82650 1.47668 1.47585 1.16464 1.07899 1.59546 1.20256 0.79742 0.97095 0.95932 1.21476 0.90198 1.43334 1.03060 0.89876 1.24920 0.96452 0.95201 0.96227 1.69885 1.01974 1.46413 1.33603 0.87122 0.79387 0.79881 0.85145 1.19847 1.20408 1.18416 1.20853 0.98986 0.83545 0.93832 1.22803 0.97318 0.97945 0.99973 1.22989 0.91960 1.03465 1.02930 1.22921 1.04432 0.92577 1.01811 0.90991 0.88597 0.91407 0.90504 0.89227 0.89444 0.76657 0.95004 0.94147 0.92122 0.89827 0.90123 0.88042 0.88644 0.89531 0.89236 0.88792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.17 10.21 36.01 0.37 -0.80 16 2 C 0.12 2.32 7.26 -82.02 -0.60 1.73 16 3 N -0.32 -5.99 12.50 33.89 0.42 -5.56 16 4 N -0.37 -6.68 3.98 -67.60 -0.27 -6.95 16 5 C 0.10 1.29 11.44 59.84 0.68 1.98 16 6 C 0.11 2.15 9.12 -16.56 -0.15 2.00 16 7 C -0.29 -6.02 5.72 -105.07 -0.60 -6.62 16 8 C 0.60 13.03 7.56 -12.52 -0.09 12.93 16 9 O -0.57 -12.92 14.76 5.28 0.08 -12.84 16 10 N -0.59 -12.24 2.46 -176.33 -0.43 -12.68 16 11 C 0.19 4.15 3.78 -5.19 -0.02 4.13 16 12 C -0.54 -13.51 8.39 -34.44 -0.29 -13.80 16 13 H 0.08 2.36 8.06 -52.49 -0.42 1.93 16 14 C 0.08 1.93 5.31 -17.82 -0.09 1.83 16 15 N -0.88 -24.08 13.96 55.43 0.77 -23.31 16 16 Si 0.86 18.29 27.24 -169.99 -4.63 13.66 16 17 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 18 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 19 H -0.26 -5.37 6.54 56.52 0.37 -5.00 16 20 C 0.15 2.80 5.79 -4.04 -0.02 2.77 16 21 C -0.16 -2.56 6.01 -90.62 -0.54 -3.11 16 22 C -0.18 -2.46 10.18 -26.69 -0.27 -2.73 16 23 C -0.18 -2.35 10.25 -26.69 -0.27 -2.62 16 24 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.10 1.60 6.49 -51.93 -0.34 1.27 16 26 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 27 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.09 1.08 8.14 -51.92 -0.42 0.66 16 29 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.22 4.56 4.10 -52.49 -0.22 4.34 16 31 H 0.03 0.69 7.18 -51.93 -0.37 0.31 16 32 H 0.04 0.87 3.58 -51.93 -0.19 0.68 16 33 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 34 H 0.08 1.56 8.11 -51.93 -0.42 1.14 16 35 H 0.08 1.52 6.95 -51.93 -0.36 1.16 16 36 H 0.10 1.68 8.14 -51.93 -0.42 1.25 16 37 H 0.10 1.36 8.03 -51.93 -0.42 0.94 16 38 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 39 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 330.75 15.07 4.98 4.98 Total: -1.00 -29.68 330.75 -6.68 -36.36 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -5.70 Total: 8.63 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: -1.91 Total: -2.31 kcal Atomic # 7 Polarization: -48.99 SS G_CDS: 0.49 Total: -48.49 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: 0.08 Total: -12.84 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -4.63 Total: 13.66 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.68 -6.68 -36.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113171427.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.143 kcal (2) G-P(sol) polarization free energy of solvation -29.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds