Wall clock time and date at job start Mon Mar 30 2020 02:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30444 * 125.98365 * 2 1 4 4 N 1.39941 * 108.89541 * 180.02562 * 3 2 1 5 5 C 1.46496 * 125.75217 * 179.97438 * 4 3 2 6 6 C 1.34257 * 108.48860 * 0.23033 * 4 3 2 7 7 C 1.38039 * 107.41835 * 359.63746 * 6 4 3 8 8 C 1.47433 * 126.41359 * 180.13573 * 7 6 4 9 9 O 1.21600 * 119.99918 * 152.22982 * 8 7 6 10 10 N 1.34774 * 120.00185 * 332.23030 * 8 7 6 11 11 C 1.46499 * 120.00081 * 5.57038 * 10 8 7 12 12 C 1.50699 * 109.47001 * 97.23092 * 11 10 8 13 13 H 1.08000 * 120.00328 * 0.02562 * 12 11 10 14 14 C 1.37881 * 120.00032 * 180.02562 * 12 11 10 15 15 N 1.31515 * 120.00095 * 180.02562 * 14 12 11 16 16 Si 1.86807 * 119.99748 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.47118 * 90.00555 * 16 14 12 18 18 H 1.48503 * 109.47007 * 210.00363 * 16 14 12 19 19 H 1.48500 * 109.47226 * 330.00485 * 16 14 12 20 20 C 1.46501 * 119.99950 * 185.57247 * 10 8 7 21 21 C 1.53001 * 109.47140 * 94.55785 * 20 10 8 22 22 C 1.52999 * 117.49712 * 240.93761 * 21 20 10 23 23 C 1.53004 * 117.49948 * 172.27955 * 21 20 10 24 24 H 1.08993 * 109.47360 * 89.97598 * 1 2 3 25 25 H 1.09004 * 109.46560 * 209.97458 * 1 2 3 26 26 H 1.08999 * 109.47295 * 329.96821 * 1 2 3 27 27 H 1.09001 * 109.47489 * 90.03160 * 5 4 3 28 28 H 1.09008 * 109.47163 * 210.02453 * 5 4 3 29 29 H 1.08996 * 109.47702 * 330.02193 * 5 4 3 30 30 H 1.07999 * 126.29072 * 179.74770 * 6 4 3 31 31 H 1.09000 * 109.47425 * 217.23266 * 11 10 8 32 32 H 1.09001 * 109.46802 * 337.23199 * 11 10 8 33 33 H 0.96999 * 119.99563 * 179.97438 * 15 14 12 34 34 H 1.09000 * 109.46953 * 214.55451 * 20 10 8 35 35 H 1.08999 * 109.47379 * 334.55755 * 20 10 8 36 36 H 1.09000 * 115.54770 * 26.61058 * 21 20 10 37 37 H 1.09002 * 117.49884 * 0.02562 * 22 21 20 38 38 H 1.09001 * 117.49638 * 145.01902 * 22 21 20 39 39 H 1.08995 * 117.50038 * 214.98050 * 23 21 20 40 40 H 1.09004 * 117.49637 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2734 1.0555 0.0000 4 7 3.6111 0.6443 -0.0006 5 6 4.7786 1.5292 -0.0013 6 6 3.6439 -0.6978 -0.0061 7 6 2.3373 -1.1431 -0.0006 8 6 1.8917 -2.5485 -0.0009 9 8 0.8220 -2.8472 0.4943 10 7 2.6698 -3.5021 -0.5501 11 6 4.0096 -3.1639 -1.0366 12 6 5.0293 -3.5123 0.0169 13 1 4.7113 -3.9430 0.9548 14 6 6.3684 -3.2813 -0.2167 15 7 7.2584 -3.5858 0.7024 16 14 6.9186 -2.5370 -1.8394 17 1 6.9383 -1.0566 -1.7236 18 1 8.2811 -3.0257 -2.1714 19 1 5.9739 -2.9370 -2.9131 20 6 2.1758 -4.8769 -0.6604 21 6 1.5562 -5.0867 -2.0436 22 6 0.0744 -5.4626 -2.1042 23 6 1.1437 -6.5100 -2.4244 24 1 -0.3634 0.0004 -1.0276 25 1 -0.3632 -0.8903 0.5135 26 1 -0.3634 0.8897 0.5143 27 1 5.0691 1.7484 1.0262 28 1 5.6054 1.0395 -0.5159 29 1 4.5303 2.4580 -0.5148 30 1 4.5297 -1.3156 -0.0117 31 1 4.2191 -3.7277 -1.9456 32 1 4.0593 -2.0965 -1.2515 33 1 8.2005 -3.4235 0.5379 34 1 3.0038 -5.5725 -0.5239 35 1 1.4217 -5.0547 0.1062 36 1 1.9460 -4.4468 -2.8352 37 1 -0.4592 -5.5600 -1.1587 38 1 -0.5107 -5.0702 -2.9360 39 1 1.2617 -6.8063 -3.4667 40 1 1.3134 -7.2968 -1.6894 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113171427.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:28 Heat of formation + Delta-G solvation = 60.310543 kcal Electronic energy + Delta-G solvation = -22244.985476 eV Core-core repulsion = 19062.275147 eV Total energy + Delta-G solvation = -3182.710329 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.47825 -40.35437 -38.14934 -36.62232 -34.87306 -34.49564 -31.90375 -30.40137 -30.03203 -28.13812 -26.40435 -24.57739 -23.22430 -22.96699 -21.90159 -21.06203 -19.97293 -19.06069 -17.97011 -17.56438 -16.96894 -16.68845 -16.22490 -15.85813 -15.61334 -15.31262 -14.87182 -14.68075 -14.43915 -14.18435 -14.15188 -13.62177 -13.43060 -13.33804 -13.07806 -12.91855 -12.73079 -12.52026 -12.35558 -12.29860 -12.09125 -11.82660 -11.71848 -11.29194 -10.86146 -10.83397 -10.67940 -10.24768 -9.65410 -9.34121 -8.33422 -6.41963 0.59281 1.15679 1.31626 1.40332 1.48168 1.49355 2.27273 2.29067 2.42845 2.97175 2.98097 3.44138 3.86239 3.89252 3.98837 4.09080 4.14453 4.20735 4.36110 4.40627 4.44627 4.61247 4.62219 4.66900 4.77295 4.78848 4.80035 4.82699 4.91733 5.00039 5.04510 5.05284 5.29025 5.30784 5.38446 5.58288 5.75955 5.92699 6.16966 6.56193 6.63151 6.72038 7.20105 7.39949 8.82186 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.010987 B = 0.009482 C = 0.005673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2547.964865 B = 2952.377331 C = 4934.057832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.115 3.885 3 N -0.320 5.320 4 N -0.367 5.367 5 C 0.086 3.914 6 C 0.101 3.899 7 C -0.315 4.315 8 C 0.593 3.407 9 O -0.586 6.586 10 N -0.590 5.590 11 C 0.203 3.797 12 C -0.541 4.541 13 H 0.033 0.967 14 C 0.030 3.970 15 N -0.931 5.931 16 Si 0.920 3.080 17 H -0.244 1.244 18 H -0.282 1.282 19 H -0.246 1.246 20 C 0.151 3.849 21 C -0.183 4.183 22 C -0.171 4.171 23 C -0.158 4.158 24 H 0.090 0.910 25 H 0.080 0.920 26 H 0.089 0.911 27 H 0.092 0.908 28 H 0.100 0.900 29 H 0.112 0.888 30 H 0.205 0.795 31 H 0.039 0.961 32 H 0.054 0.946 33 H 0.271 0.729 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.102 0.898 39 H 0.111 0.889 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.832 5.258 -7.762 11.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.053 4.053 3 N -0.143 5.143 4 N -0.145 5.145 5 C -0.053 4.053 6 C -0.050 4.050 7 C -0.330 4.330 8 C 0.383 3.617 9 O -0.469 6.469 10 N -0.319 5.319 11 C 0.081 3.919 12 C -0.580 4.580 13 H 0.051 0.949 14 C -0.170 4.170 15 N -0.570 5.570 16 Si 0.742 3.258 17 H -0.168 1.168 18 H -0.208 1.208 19 H -0.169 1.169 20 C 0.028 3.972 21 C -0.202 4.202 22 C -0.208 4.208 23 C -0.195 4.195 24 H 0.108 0.892 25 H 0.099 0.901 26 H 0.108 0.892 27 H 0.110 0.890 28 H 0.119 0.881 29 H 0.131 0.869 30 H 0.222 0.778 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.115 0.885 37 H 0.107 0.893 38 H 0.120 0.880 39 H 0.129 0.871 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.988 6.492 -7.460 12.109 hybrid contribution 1.041 -0.925 -0.097 1.396 sum -5.946 5.568 -7.557 11.111 Atomic orbital electron populations 1.20327 0.84360 1.04225 1.04006 1.22770 0.98192 0.88437 0.95866 1.76944 0.86844 1.22788 1.27688 1.48672 1.06399 1.04997 1.54469 1.22342 0.83022 0.94670 1.05262 1.24408 1.00478 0.85330 0.94814 1.20291 0.93115 0.94426 1.25153 1.17465 0.83129 0.84432 0.76674 1.90592 1.24680 1.83109 1.48473 1.47675 1.16144 1.08738 1.59308 1.20074 0.79212 0.97786 0.94839 1.21436 0.91453 1.43052 1.02014 0.94899 1.25687 0.96082 0.95300 0.99943 1.70035 1.02504 1.48202 1.36214 0.86131 0.78657 0.80646 0.80379 1.16824 1.20781 1.16948 1.20899 0.98418 0.82283 0.95615 1.22621 0.99013 1.00588 0.97993 1.23035 0.90990 1.03486 1.03261 1.23038 1.02119 0.91127 1.03200 0.89199 0.90102 0.89243 0.88999 0.88120 0.86932 0.77844 0.94301 0.92880 0.91918 0.90868 0.91139 0.88465 0.89297 0.87970 0.87073 0.88149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.10 10.21 71.24 0.73 -1.37 16 2 C 0.11 4.23 7.26 43.51 0.32 4.55 16 3 N -0.32 -11.38 12.50 -46.68 -0.58 -11.97 16 4 N -0.37 -12.44 3.98 -367.79 -1.46 -13.90 16 5 C 0.09 1.99 11.44 127.77 1.46 3.45 16 6 C 0.10 3.96 9.12 84.27 0.77 4.73 16 7 C -0.32 -13.04 5.72 -20.15 -0.12 -13.15 16 8 C 0.59 26.21 7.56 86.67 0.66 26.87 16 9 O -0.59 -27.25 14.76 -4.03 -0.06 -27.31 16 10 N -0.59 -25.16 2.46 -830.04 -2.04 -27.21 16 11 C 0.20 8.81 3.78 85.63 0.32 9.13 16 12 C -0.54 -27.78 8.39 25.60 0.21 -27.57 16 13 H 0.03 1.98 8.06 -2.91 -0.02 1.95 16 14 C 0.03 1.55 5.31 84.66 0.45 2.00 16 15 N -0.93 -52.10 13.96 21.45 0.30 -51.80 16 16 Si 0.92 36.61 27.24 68.60 1.87 38.48 16 17 H -0.24 -8.58 7.11 99.48 0.71 -7.88 16 18 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16 19 H -0.25 -9.20 6.54 99.48 0.65 -8.55 16 20 C 0.15 5.71 5.79 86.38 0.50 6.21 16 21 C -0.18 -5.68 6.01 -10.79 -0.06 -5.75 16 22 C -0.17 -4.50 10.18 30.62 0.31 -4.19 16 23 C -0.16 -3.79 10.25 30.62 0.31 -3.47 16 24 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 25 H 0.08 2.67 6.49 -2.38 -0.02 2.65 16 26 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 27 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.10 2.11 8.14 -2.38 -0.02 2.09 16 29 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.21 8.58 4.10 -2.91 -0.01 8.56 16 31 H 0.04 1.64 7.18 -2.39 -0.02 1.62 16 32 H 0.05 2.22 3.58 -2.39 -0.01 2.21 16 33 H 0.27 14.12 8.31 -92.71 -0.77 13.35 16 34 H 0.07 2.85 8.11 -2.39 -0.02 2.83 16 35 H 0.07 2.76 6.95 -2.39 -0.02 2.75 16 36 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 37 H 0.09 2.46 8.03 -2.39 -0.02 2.44 16 38 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 39 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.10 2.29 8.14 -2.38 -0.02 2.27 16 Total: -1.00 -65.48 330.75 4.87 -60.61 By element: Atomic # 1 Polarization: 30.67 SS G_CDS: 0.99 Total: 31.66 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: 5.86 Total: 1.43 kcal Atomic # 7 Polarization: -101.08 SS G_CDS: -3.79 Total: -104.88 kcal Atomic # 8 Polarization: -27.25 SS G_CDS: -0.06 Total: -27.31 kcal Atomic # 14 Polarization: 36.61 SS G_CDS: 1.87 Total: 38.48 kcal Total: -65.48 4.87 -60.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113171427.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.924 kcal (2) G-P(sol) polarization free energy of solvation -65.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds