Wall clock time and date at job start Mon Mar 30 2020 02:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30176 * 126.80120 * 2 1 4 4 O 1.20926 * 111.60265 * 179.97438 * 3 2 1 5 5 C 1.34035 * 111.56759 * 359.76936 * 4 3 2 6 6 C 1.50702 * 126.77531 * 180.28326 * 5 4 3 7 7 C 1.35450 * 106.44728 * 0.37283 * 5 4 3 8 8 C 1.50701 * 128.00618 * 179.91021 * 7 5 4 9 9 H 1.08994 * 109.47509 * 345.57506 * 8 7 5 10 10 C 1.53006 * 109.47055 * 105.57685 * 8 7 5 11 11 N 1.46907 * 109.47131 * 225.57368 * 8 7 5 12 12 C 1.46899 * 110.99635 * 149.14545 * 11 8 7 13 13 C 1.53006 * 109.46985 * 180.02562 * 12 11 8 14 14 H 1.08991 * 109.47084 * 54.99602 * 13 12 11 15 15 C 1.47201 * 109.46594 * 295.00081 * 13 12 11 16 16 N 5.96330 * 48.43493 * 198.12869 * 2 1 3 17 17 C 1.52996 * 109.47110 * 175.00215 * 13 12 11 18 18 C 1.50708 * 109.46744 * 185.00002 * 17 13 12 19 19 H 1.07996 * 119.99752 * 359.97438 * 18 17 13 20 20 C 1.37872 * 119.99657 * 179.97438 * 18 17 13 21 21 N 1.31511 * 120.00084 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00277 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47606 * 89.99581 * 22 20 18 24 24 H 1.48499 * 109.47253 * 209.99828 * 22 20 18 25 25 H 1.48503 * 109.46972 * 329.99589 * 22 20 18 26 26 H 1.09002 * 109.47241 * 270.01952 * 1 2 3 27 27 H 1.09003 * 109.47407 * 30.02193 * 1 2 3 28 28 H 1.09005 * 109.47422 * 150.01926 * 1 2 3 29 29 H 1.08999 * 109.47331 * 273.85373 * 6 5 4 30 30 H 1.09000 * 109.47464 * 33.86510 * 6 5 4 31 31 H 1.09008 * 109.46905 * 153.86388 * 6 5 4 32 32 H 1.09003 * 109.46902 * 59.99586 * 10 8 7 33 33 H 1.08997 * 109.47175 * 179.97438 * 10 8 7 34 34 H 1.09003 * 109.46870 * 300.00124 * 10 8 7 35 35 H 1.00897 * 111.00168 * 273.09895 * 11 8 7 36 36 H 1.08999 * 109.47066 * 299.99699 * 12 11 8 37 37 H 1.09002 * 109.47485 * 60.00178 * 12 11 8 38 38 H 1.09002 * 109.46950 * 304.99084 * 17 13 12 39 39 H 1.08996 * 109.47549 * 64.99969 * 17 13 12 40 40 H 0.96999 * 120.00549 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2867 1.0423 0.0000 4 8 3.4537 0.7253 0.0005 5 6 3.6024 -0.6068 0.0059 6 6 4.9021 -1.3695 0.0142 7 6 2.3539 -1.1320 0.0005 8 6 1.9591 -2.5864 0.0014 9 1 2.8256 -3.1983 -0.2489 10 6 1.4444 -2.9743 1.3891 11 7 0.9002 -2.8069 -0.9928 12 6 0.9810 -4.1612 -1.5562 13 6 -0.1347 -4.3527 -2.5856 14 1 -0.0751 -3.5652 -3.3367 15 6 -1.4412 -4.2889 -1.9105 16 7 -2.4495 -4.2403 -1.3883 17 6 0.0239 -5.7158 -3.2619 18 6 -0.9992 -5.8538 -4.3599 19 1 -1.6933 -5.0499 -4.5553 20 6 -1.0490 -7.0064 -5.1148 21 7 -1.9421 -7.1272 -6.0726 22 14 0.1512 -8.3973 -4.7763 23 1 -0.4346 -9.3240 -3.7747 24 1 0.4209 -9.1360 -6.0359 25 1 1.4217 -7.8375 -4.2491 26 1 -0.3634 0.0004 1.0277 27 1 -0.3634 0.8898 -0.5142 28 1 -0.3634 -0.8902 -0.5135 29 1 5.2548 -1.4975 -1.0092 30 1 5.6450 -0.8154 0.5879 31 1 4.7466 -2.3475 0.4698 32 1 0.5778 -2.3623 1.6394 33 1 1.1584 -4.0261 1.3896 34 1 2.2301 -2.8106 2.1268 35 1 -0.0109 -2.6345 -0.5950 36 1 1.9483 -4.2963 -2.0400 37 1 0.8686 -4.8943 -0.7574 38 1 1.0248 -5.7968 -3.6859 39 1 -0.1241 -6.5061 -2.5260 40 1 -1.9774 -7.9382 -6.6035 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113951164.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:54 Heat of formation + Delta-G solvation = 50.219493 kcal Electronic energy + Delta-G solvation = -21219.488609 eV Core-core repulsion = 18036.340699 eV Total energy + Delta-G solvation = -3183.147910 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -45.81574 -39.32389 -37.68095 -35.78990 -35.04420 -34.43528 -33.43091 -30.88545 -29.63507 -28.37486 -28.16755 -25.14575 -23.86235 -23.32971 -21.77672 -20.97430 -18.92366 -18.58234 -18.30271 -17.73177 -16.88767 -16.32684 -15.86968 -15.39282 -15.09221 -14.70158 -14.63538 -14.42274 -14.29691 -14.05701 -13.90950 -13.86044 -13.67377 -13.47572 -13.34160 -13.20964 -13.15978 -12.75364 -12.60209 -12.46221 -12.35005 -11.90761 -11.69287 -11.65570 -11.51988 -11.29857 -10.72011 -10.71576 -9.98668 -9.37655 -8.22496 -6.28474 0.61492 1.31068 1.45686 1.47117 1.58258 1.95575 1.96565 2.33858 2.43456 3.03797 3.13935 3.25418 3.43431 3.67522 3.95207 4.02065 4.14010 4.31624 4.41342 4.46558 4.48536 4.59794 4.60576 4.74841 4.75010 4.81309 4.85817 4.90908 4.99575 5.01947 5.04971 5.20096 5.26376 5.29000 5.38178 5.49605 5.66222 6.07312 6.27988 6.31181 6.76280 6.82524 7.36187 7.42842 8.94618 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023606 B = 0.003915 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.858456 B = 7150.261513 C = 7628.703348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.026 3.974 3 N -0.407 5.407 4 O 0.080 5.920 5 C -0.027 4.027 6 C -0.073 4.073 7 C -0.191 4.191 8 C 0.166 3.834 9 H 0.116 0.884 10 C -0.175 4.175 11 N -0.693 5.693 12 C 0.076 3.924 13 C 0.022 3.978 14 H 0.115 0.885 15 C 0.247 3.753 16 N -0.505 5.505 17 C -0.002 4.002 18 C -0.532 4.532 19 H 0.025 0.975 20 C 0.001 3.999 21 N -0.957 5.957 22 Si 0.949 3.051 23 H -0.277 1.277 24 H -0.292 1.292 25 H -0.218 1.218 26 H 0.085 0.915 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.110 0.890 32 H 0.048 0.952 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.336 0.664 36 H 0.119 0.881 37 H 0.051 0.949 38 H 0.067 0.933 39 H 0.028 0.972 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.107 8.482 15.953 25.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.133 4.133 3 N -0.117 5.117 4 O 0.018 5.982 5 C -0.091 4.091 6 C -0.130 4.130 7 C -0.196 4.196 8 C 0.056 3.944 9 H 0.134 0.866 10 C -0.234 4.234 11 N -0.325 5.325 12 C -0.053 4.053 13 C 0.000 4.000 14 H 0.133 0.867 15 C -0.069 4.069 16 N -0.183 5.183 17 C -0.041 4.041 18 C -0.570 4.570 19 H 0.044 0.956 20 C -0.195 4.195 21 N -0.598 5.598 22 Si 0.772 3.228 23 H -0.202 1.202 24 H -0.219 1.219 25 H -0.140 1.140 26 H 0.104 0.896 27 H 0.089 0.911 28 H 0.106 0.894 29 H 0.118 0.882 30 H 0.115 0.885 31 H 0.128 0.872 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.156 0.844 36 H 0.137 0.863 37 H 0.069 0.931 38 H 0.085 0.915 39 H 0.046 0.954 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 16.679 10.067 16.101 25.274 hybrid contribution -0.793 -1.665 -0.061 1.845 sum 15.886 8.403 16.040 24.088 Atomic orbital electron populations 1.20287 0.85859 1.04054 1.03461 1.23665 0.99380 0.88859 1.01380 1.73808 0.90001 1.25152 1.22700 1.84735 1.21198 1.23841 1.68433 1.24925 0.99479 0.83087 1.01593 1.20582 0.88220 0.98833 1.05391 1.21037 0.91445 0.97359 1.09709 1.19745 0.95718 0.88571 0.90383 0.86594 1.22437 1.02012 1.01793 0.97154 1.60561 1.07035 1.27490 1.37398 1.22095 0.98679 0.88739 0.95827 1.19132 0.82896 1.01537 0.96409 0.86738 1.29779 0.95029 0.90604 0.91519 1.81084 1.12450 1.11534 1.13209 1.19586 0.98154 0.91853 0.94469 1.21434 1.16980 1.01986 1.16591 0.95614 1.26079 0.97487 1.01679 0.94305 1.70098 1.37719 1.28917 1.23023 0.85681 0.81157 0.78421 0.77531 1.20233 1.21860 1.14009 0.89610 0.91067 0.89442 0.88167 0.88545 0.87195 0.93249 0.91402 0.90519 0.84385 0.86280 0.93090 0.91458 0.95361 0.92739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.72 10.34 71.23 0.74 -0.98 16 2 C 0.03 0.62 7.28 43.58 0.32 0.94 16 3 N -0.41 -11.14 12.07 -49.56 -0.60 -11.74 16 4 O 0.08 1.89 11.20 71.68 0.80 2.69 16 5 C -0.03 -0.47 7.49 25.04 0.19 -0.29 16 6 C -0.07 -0.56 10.18 71.24 0.72 0.17 16 7 C -0.19 -3.78 5.22 -19.74 -0.10 -3.89 16 8 C 0.17 2.67 2.92 44.17 0.13 2.80 16 9 H 0.12 1.34 6.92 -2.39 -0.02 1.32 16 10 C -0.18 -2.57 9.17 71.98 0.66 -1.91 16 11 N -0.69 -14.29 5.51 -495.42 -2.73 -17.02 16 12 C 0.08 1.60 4.93 86.31 0.43 2.03 16 13 C 0.02 0.70 2.42 -12.60 -0.03 0.66 16 14 H 0.11 3.67 8.14 -2.39 -0.02 3.65 16 15 C 0.25 9.26 12.98 89.44 1.16 10.42 16 16 N -0.51 -21.19 18.54 20.01 0.37 -20.82 16 17 C 0.00 -0.06 3.49 29.85 0.10 0.04 16 18 C -0.53 -28.19 9.15 25.60 0.23 -27.95 16 19 H 0.03 1.56 7.84 -2.91 -0.02 1.54 16 20 C 0.00 0.05 5.47 84.65 0.46 0.51 16 21 N -0.96 -58.95 13.96 21.45 0.30 -58.65 16 22 Si 0.95 40.30 27.47 68.60 1.88 42.19 16 23 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 24 H -0.29 -12.60 7.11 99.48 0.71 -11.90 16 25 H -0.22 -7.66 6.54 99.48 0.65 -7.01 16 26 H 0.09 1.60 8.14 -2.39 -0.02 1.59 16 27 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.09 1.93 5.42 -2.38 -0.01 1.91 16 29 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.11 0.43 7.50 -2.38 -0.02 0.41 16 32 H 0.05 0.83 8.12 -2.39 -0.02 0.81 16 33 H 0.07 0.96 7.89 -2.39 -0.02 0.94 16 34 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.34 7.64 5.55 -89.70 -0.50 7.14 16 36 H 0.12 1.96 8.06 -2.39 -0.02 1.94 16 37 H 0.05 0.98 7.89 -2.39 -0.02 0.96 16 38 H 0.07 2.26 7.20 -2.39 -0.02 2.24 16 39 H 0.03 1.05 7.57 -2.39 -0.02 1.03 16 40 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -72.72 337.66 5.54 -67.18 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: 0.50 Total: 13.61 kcal Atomic # 6 Polarization: -22.44 SS G_CDS: 5.01 Total: -17.43 kcal Atomic # 7 Polarization: -105.58 SS G_CDS: -2.66 Total: -108.23 kcal Atomic # 8 Polarization: 1.89 SS G_CDS: 0.80 Total: 2.69 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 1.88 Total: 42.19 kcal Total: -72.72 5.54 -67.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113951164.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.401 kcal (2) G-P(sol) polarization free energy of solvation -72.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds