Wall clock time and date at job start Mon Mar 30 2020 02:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30184 * 126.80285 * 2 1 4 4 O 1.20916 * 111.60295 * 180.25248 * 3 2 1 5 5 C 1.34036 * 111.57279 * 359.74637 * 4 3 2 6 6 C 1.50698 * 126.78172 * 180.02562 * 5 4 3 7 7 C 1.35453 * 106.44521 * 359.97438 * 5 4 3 8 8 C 1.50698 * 128.01112 * 179.97438 * 7 5 4 9 9 H 1.09003 * 109.46782 * 14.99468 * 8 7 5 10 10 C 1.53000 * 109.47089 * 255.00278 * 8 7 5 11 11 N 1.46901 * 109.47435 * 134.99743 * 8 7 5 12 12 C 1.46895 * 111.00119 * 205.00131 * 11 8 7 13 13 C 1.52994 * 109.47270 * 179.97438 * 12 11 8 14 14 H 1.09009 * 109.47154 * 54.99975 * 13 12 11 15 15 C 1.47200 * 109.47451 * 295.00037 * 13 12 11 16 16 N 5.59922 * 77.13968 * 122.58750 * 2 1 3 17 17 C 1.52996 * 109.47347 * 174.99819 * 13 12 11 18 18 C 1.50702 * 109.47159 * 185.00014 * 17 13 12 19 19 H 1.08002 * 120.00299 * 0.02562 * 18 17 13 20 20 C 1.37884 * 119.99942 * 179.72211 * 18 17 13 21 21 N 1.31514 * 119.99985 * 180.27663 * 20 18 17 22 22 Si 1.86800 * 119.99777 * 0.28166 * 20 18 17 23 23 H 1.48498 * 109.47109 * 89.99834 * 22 20 18 24 24 H 1.48507 * 109.46754 * 209.99574 * 22 20 18 25 25 H 1.48498 * 109.47278 * 329.99405 * 22 20 18 26 26 H 1.09006 * 109.46823 * 270.16666 * 1 2 3 27 27 H 1.08998 * 109.47100 * 30.16666 * 1 2 3 28 28 H 1.08993 * 109.47059 * 150.16413 * 1 2 3 29 29 H 1.09008 * 109.46745 * 269.99979 * 6 5 4 30 30 H 1.08999 * 109.47369 * 29.99844 * 6 5 4 31 31 H 1.09001 * 109.47380 * 150.00315 * 6 5 4 32 32 H 1.09003 * 109.46647 * 299.99273 * 10 8 7 33 33 H 1.08997 * 109.47308 * 59.99320 * 10 8 7 34 34 H 1.09002 * 109.46929 * 180.02562 * 10 8 7 35 35 H 1.00905 * 110.99468 * 328.95814 * 11 8 7 36 36 H 1.08998 * 109.47324 * 59.99878 * 12 11 8 37 37 H 1.09002 * 109.47421 * 300.00055 * 12 11 8 38 38 H 1.09004 * 109.47066 * 65.00217 * 17 13 12 39 39 H 1.08994 * 109.47405 * 305.00047 * 17 13 12 40 40 H 0.96996 * 119.99730 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0424 0.0000 4 8 3.4537 0.7254 -0.0050 5 6 3.6025 -0.6067 -0.0035 6 6 4.9022 -1.3695 -0.0078 7 6 2.3540 -1.1320 0.0038 8 6 1.9591 -2.5863 0.0078 9 1 2.8233 -3.1967 0.2698 10 6 1.4578 -2.9824 -1.3825 11 7 0.8909 -2.8011 0.9931 12 6 0.8799 -4.1929 1.4627 13 6 -0.2428 -4.3772 2.4855 14 1 -1.1890 -4.0587 2.0478 15 6 0.0432 -3.5655 3.6798 16 7 0.2607 -2.9400 4.5994 17 6 -0.3350 -5.8521 2.8815 18 6 -1.5174 -6.0544 3.7937 19 1 -2.1411 -5.2150 4.0637 20 6 -1.8068 -7.3123 4.2786 21 7 -2.8419 -7.4898 5.0703 22 14 -0.7285 -8.7643 3.8111 23 1 0.3682 -8.9058 4.8023 24 1 -1.5463 -10.0039 3.7974 25 1 -0.1505 -8.5377 2.4622 26 1 -0.3633 0.0030 1.0277 27 1 -0.3633 0.8885 -0.5164 28 1 -0.3633 -0.8914 -0.5112 29 1 5.2111 -1.5550 -1.0366 30 1 5.6682 -0.7850 0.5018 31 1 4.7673 -2.3202 0.5081 32 1 0.5936 -2.3720 -1.6446 33 1 2.2504 -2.8231 -2.1135 34 1 1.1718 -4.0342 -1.3795 35 1 0.9782 -2.1590 1.7666 36 1 1.8372 -4.4268 1.9285 37 1 0.7147 -4.8605 0.6170 38 1 0.5778 -6.1472 3.3991 39 1 -0.4583 -6.4616 1.9863 40 1 -3.0452 -8.3747 5.4117 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113951167.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:57 Heat of formation + Delta-G solvation = 68.531378 kcal Electronic energy + Delta-G solvation = -21231.809357 eV Core-core repulsion = 18049.455510 eV Total energy + Delta-G solvation = -3182.353847 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -45.04622 -38.20806 -36.45518 -34.50977 -33.88657 -33.28384 -31.90903 -29.85348 -28.71825 -27.84641 -26.80646 -24.24378 -22.59432 -21.61153 -20.66048 -20.25190 -17.78640 -17.23392 -16.92496 -16.80620 -15.78491 -15.35923 -14.61254 -14.18783 -14.04298 -13.65033 -13.47100 -13.34576 -13.22351 -13.06775 -12.85314 -12.77713 -12.50029 -12.46687 -12.25566 -12.05853 -11.90378 -11.55426 -11.49060 -11.24067 -10.93847 -10.84126 -10.34880 -10.05362 -9.94076 -9.79347 -9.37307 -9.30777 -8.64416 -8.52382 -6.13101 -4.14009 1.28996 2.08632 2.94138 3.24274 3.31361 3.32569 3.50211 3.54395 3.91448 4.19832 4.29980 4.35540 4.63612 4.67797 4.78248 5.02148 5.06816 5.10388 5.18984 5.21482 5.34270 5.42098 5.50123 5.52354 5.57763 5.62465 5.66837 5.78795 5.85267 5.92810 6.05358 6.15197 6.25009 6.31038 6.90833 6.92683 7.08463 7.26290 7.60615 8.17673 8.30099 8.39600 8.90418 9.46507 11.00026 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026441 B = 0.003829 C = 0.003680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.713788 B = 7311.664806 C = 7607.265344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.043 3.957 3 N -0.373 5.373 4 O 0.093 5.907 5 C -0.031 4.031 6 C -0.074 4.074 7 C -0.204 4.204 8 C 0.164 3.836 9 H 0.056 0.944 10 C -0.136 4.136 11 N -0.682 5.682 12 C 0.064 3.936 13 C 0.017 3.983 14 H 0.117 0.883 15 C 0.237 3.763 16 N -0.467 5.467 17 C -0.004 4.004 18 C -0.529 4.529 19 H 0.074 0.926 20 C 0.071 3.929 21 N -0.897 5.897 22 Si 0.878 3.122 23 H -0.278 1.278 24 H -0.286 1.286 25 H -0.262 1.262 26 H 0.081 0.919 27 H 0.068 0.932 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.065 0.935 33 H 0.053 0.947 34 H 0.065 0.935 35 H 0.342 0.658 36 H 0.036 0.964 37 H 0.094 0.906 38 H 0.018 0.982 39 H 0.039 0.961 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.400 9.210 -15.794 22.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.116 4.116 3 N -0.080 5.080 4 O 0.030 5.970 5 C -0.095 4.095 6 C -0.132 4.132 7 C -0.209 4.209 8 C 0.054 3.946 9 H 0.074 0.926 10 C -0.194 4.194 11 N -0.314 5.314 12 C -0.066 4.066 13 C -0.005 4.005 14 H 0.135 0.865 15 C -0.080 4.080 16 N -0.143 5.143 17 C -0.043 4.043 18 C -0.567 4.567 19 H 0.092 0.908 20 C -0.131 4.131 21 N -0.534 5.534 22 Si 0.705 3.295 23 H -0.203 1.203 24 H -0.212 1.212 25 H -0.187 1.187 26 H 0.100 0.900 27 H 0.087 0.913 28 H 0.112 0.888 29 H 0.107 0.893 30 H 0.102 0.898 31 H 0.109 0.891 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.161 0.839 36 H 0.054 0.946 37 H 0.112 0.888 38 H 0.037 0.963 39 H 0.057 0.943 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 12.930 11.238 -14.776 22.623 hybrid contribution 1.013 -1.872 0.277 2.146 sum 13.943 9.366 -14.499 22.189 Atomic orbital electron populations 1.20229 0.85397 1.03727 1.03844 1.23484 0.99220 0.87811 1.01112 1.73848 0.89217 1.24048 1.20883 1.84799 1.21862 1.22291 1.68079 1.24250 0.98116 0.84097 1.03016 1.20350 0.90144 0.98630 1.04043 1.21060 0.91609 0.97558 1.10627 1.19724 0.92786 0.87611 0.94485 0.92577 1.21790 1.01355 1.02140 0.94092 1.60680 1.46955 1.05684 1.18055 1.22184 0.97181 0.89340 0.97868 1.19065 0.99683 0.95879 0.85824 0.86490 1.29066 0.92295 0.92233 0.94437 1.80948 1.10035 1.12342 1.11024 1.19629 0.98294 0.88371 0.97962 1.21027 1.11133 0.95846 1.28648 0.90792 1.24995 0.94891 0.98805 0.94409 1.69904 1.27411 1.23146 1.32987 0.86816 0.80737 0.82324 0.79640 1.20334 1.21235 1.18686 0.90011 0.91296 0.88776 0.89345 0.89832 0.89130 0.91634 0.92780 0.91579 0.83900 0.94603 0.88792 0.96324 0.94253 0.92544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.79 9.80 36.01 0.35 -0.44 16 2 C 0.04 0.53 7.24 -82.10 -0.59 -0.07 16 3 N -0.37 -5.10 12.07 33.42 0.40 -4.69 16 4 O 0.09 1.14 11.20 17.19 0.19 1.34 16 5 C -0.03 -0.31 7.49 -35.30 -0.26 -0.57 16 6 C -0.07 -0.45 10.26 36.00 0.37 -0.08 16 7 C -0.20 -2.23 4.89 -104.42 -0.51 -2.74 16 8 C 0.16 1.61 2.97 -68.86 -0.20 1.41 16 9 H 0.06 0.51 6.80 -51.93 -0.35 0.15 16 10 C -0.14 -1.18 9.40 37.16 0.35 -0.83 16 11 N -0.68 -7.88 5.59 -107.96 -0.60 -8.48 16 12 C 0.06 0.80 4.92 -3.83 -0.02 0.79 16 13 C 0.02 0.29 2.42 -93.41 -0.23 0.06 16 14 H 0.12 1.90 8.14 -51.92 -0.42 1.48 16 15 C 0.24 4.60 12.97 -20.85 -0.27 4.33 16 16 N -0.47 -10.04 18.52 42.05 0.78 -9.26 16 17 C 0.00 -0.07 3.49 -27.88 -0.10 -0.17 16 18 C -0.53 -13.96 9.15 -34.44 -0.32 -14.27 16 19 H 0.07 2.16 7.84 -52.49 -0.41 1.74 16 20 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 21 N -0.90 -26.78 13.96 55.43 0.77 -26.00 16 22 Si 0.88 20.24 27.47 -169.99 -4.67 15.57 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.26 -5.54 6.54 56.52 0.37 -5.17 16 26 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.09 0.92 6.94 -51.93 -0.36 0.56 16 29 H 0.09 0.39 8.14 -51.92 -0.42 -0.03 16 30 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.09 0.50 7.28 -51.93 -0.38 0.12 16 32 H 0.06 0.60 7.00 -51.93 -0.36 0.24 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.55 7.45 -51.93 -0.39 0.16 16 35 H 0.34 4.47 7.39 -39.29 -0.29 4.18 16 36 H 0.04 0.44 8.05 -51.93 -0.42 0.03 16 37 H 0.09 1.04 7.44 -51.93 -0.39 0.65 16 38 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 39 H 0.04 0.76 7.19 -51.93 -0.37 0.39 16 40 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 338.12 15.07 5.10 5.10 Total: -1.00 -31.74 338.12 -5.38 -37.12 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -5.82 Total: 0.04 kcal Atomic # 6 Polarization: -9.19 SS G_CDS: -1.53 Total: -10.72 kcal Atomic # 7 Polarization: -49.79 SS G_CDS: 1.35 Total: -48.44 kcal Atomic # 8 Polarization: 1.14 SS G_CDS: 0.19 Total: 1.34 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.67 Total: 15.57 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.74 -5.38 -37.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113951167.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.650 kcal (2) G-P(sol) polarization free energy of solvation -31.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds