Wall clock time and date at job start Mon Mar 30 2020 02:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30184 * 126.80285 * 2 1 4 4 O 1.20916 * 111.60295 * 180.25248 * 3 2 1 5 5 C 1.34036 * 111.57279 * 359.74637 * 4 3 2 6 6 C 1.50698 * 126.78172 * 180.02562 * 5 4 3 7 7 C 1.35453 * 106.44521 * 359.97438 * 5 4 3 8 8 C 1.50698 * 128.01112 * 179.97438 * 7 5 4 9 9 H 1.09003 * 109.46782 * 14.99468 * 8 7 5 10 10 C 1.53000 * 109.47089 * 255.00278 * 8 7 5 11 11 N 1.46901 * 109.47435 * 134.99743 * 8 7 5 12 12 C 1.46895 * 111.00119 * 205.00131 * 11 8 7 13 13 C 1.52994 * 109.47270 * 179.97438 * 12 11 8 14 14 H 1.09009 * 109.47154 * 54.99975 * 13 12 11 15 15 C 1.47200 * 109.47451 * 295.00037 * 13 12 11 16 16 N 5.59922 * 77.13968 * 122.58750 * 2 1 3 17 17 C 1.52996 * 109.47347 * 174.99819 * 13 12 11 18 18 C 1.50702 * 109.47159 * 185.00014 * 17 13 12 19 19 H 1.08002 * 120.00299 * 0.02562 * 18 17 13 20 20 C 1.37884 * 119.99942 * 179.72211 * 18 17 13 21 21 N 1.31514 * 119.99985 * 180.27663 * 20 18 17 22 22 Si 1.86800 * 119.99777 * 0.28166 * 20 18 17 23 23 H 1.48498 * 109.47109 * 89.99834 * 22 20 18 24 24 H 1.48507 * 109.46754 * 209.99574 * 22 20 18 25 25 H 1.48498 * 109.47278 * 329.99405 * 22 20 18 26 26 H 1.09006 * 109.46823 * 270.16666 * 1 2 3 27 27 H 1.08998 * 109.47100 * 30.16666 * 1 2 3 28 28 H 1.08993 * 109.47059 * 150.16413 * 1 2 3 29 29 H 1.09008 * 109.46745 * 269.99979 * 6 5 4 30 30 H 1.08999 * 109.47369 * 29.99844 * 6 5 4 31 31 H 1.09001 * 109.47380 * 150.00315 * 6 5 4 32 32 H 1.09003 * 109.46647 * 299.99273 * 10 8 7 33 33 H 1.08997 * 109.47308 * 59.99320 * 10 8 7 34 34 H 1.09002 * 109.46929 * 180.02562 * 10 8 7 35 35 H 1.00905 * 110.99468 * 328.95814 * 11 8 7 36 36 H 1.08998 * 109.47324 * 59.99878 * 12 11 8 37 37 H 1.09002 * 109.47421 * 300.00055 * 12 11 8 38 38 H 1.09004 * 109.47066 * 65.00217 * 17 13 12 39 39 H 1.08994 * 109.47405 * 305.00047 * 17 13 12 40 40 H 0.96996 * 119.99730 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0424 0.0000 4 8 3.4537 0.7254 -0.0050 5 6 3.6025 -0.6067 -0.0035 6 6 4.9022 -1.3695 -0.0078 7 6 2.3540 -1.1320 0.0038 8 6 1.9591 -2.5863 0.0078 9 1 2.8233 -3.1967 0.2698 10 6 1.4578 -2.9824 -1.3825 11 7 0.8909 -2.8011 0.9931 12 6 0.8799 -4.1929 1.4627 13 6 -0.2428 -4.3772 2.4855 14 1 -1.1890 -4.0587 2.0478 15 6 0.0432 -3.5655 3.6798 16 7 0.2607 -2.9400 4.5994 17 6 -0.3350 -5.8521 2.8815 18 6 -1.5174 -6.0544 3.7937 19 1 -2.1411 -5.2150 4.0637 20 6 -1.8068 -7.3123 4.2786 21 7 -2.8419 -7.4898 5.0703 22 14 -0.7285 -8.7643 3.8111 23 1 0.3682 -8.9058 4.8023 24 1 -1.5463 -10.0039 3.7974 25 1 -0.1505 -8.5377 2.4622 26 1 -0.3633 0.0030 1.0277 27 1 -0.3633 0.8885 -0.5164 28 1 -0.3633 -0.8914 -0.5112 29 1 5.2111 -1.5550 -1.0366 30 1 5.6682 -0.7850 0.5018 31 1 4.7673 -2.3202 0.5081 32 1 0.5936 -2.3720 -1.6446 33 1 2.2504 -2.8231 -2.1135 34 1 1.1718 -4.0342 -1.3795 35 1 0.9782 -2.1590 1.7666 36 1 1.8372 -4.4268 1.9285 37 1 0.7147 -4.8605 0.6170 38 1 0.5778 -6.1472 3.3991 39 1 -0.4583 -6.4616 1.9863 40 1 -3.0452 -8.3747 5.4117 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113951167.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:57 Heat of formation + Delta-G solvation = 47.798170 kcal Electronic energy + Delta-G solvation = -21232.708416 eV Core-core repulsion = 18049.455510 eV Total energy + Delta-G solvation = -3183.252906 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -45.91899 -39.27809 -37.70857 -35.83656 -35.05468 -34.48186 -33.38098 -30.90824 -29.58989 -28.47824 -28.27714 -25.25644 -23.66401 -23.30567 -21.52545 -21.04671 -18.91800 -18.67409 -18.29491 -17.97426 -16.77431 -16.48537 -15.93891 -15.38357 -15.03512 -14.79904 -14.61981 -14.36983 -14.28495 -14.09158 -13.92748 -13.77427 -13.53582 -13.51165 -13.30727 -13.21230 -13.05431 -12.75351 -12.64427 -12.50629 -12.19379 -11.92315 -11.69109 -11.65425 -11.52770 -11.28712 -10.78118 -10.71300 -10.10383 -9.38596 -8.22239 -6.28010 0.49756 1.21977 1.45850 1.47048 1.58240 1.96785 1.98121 2.22387 2.43601 3.03975 3.14239 3.26165 3.34065 3.57505 3.88440 4.03055 4.15474 4.38907 4.42259 4.44933 4.56179 4.64373 4.69847 4.70966 4.78459 4.81037 4.87932 4.93300 4.94881 5.07538 5.16249 5.22347 5.27950 5.30422 5.49829 5.55311 5.66752 6.08734 6.27164 6.29598 6.76369 6.82838 7.33517 7.36565 8.94846 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026441 B = 0.003829 C = 0.003680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.713788 B = 7311.664806 C = 7607.265344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.030 3.970 3 N -0.406 5.406 4 O 0.080 5.920 5 C -0.024 4.024 6 C -0.075 4.075 7 C -0.217 4.217 8 C 0.168 3.832 9 H 0.074 0.926 10 C -0.133 4.133 11 N -0.684 5.684 12 C 0.075 3.925 13 C 0.023 3.977 14 H 0.120 0.880 15 C 0.249 3.751 16 N -0.511 5.511 17 C -0.002 4.002 18 C -0.531 4.531 19 H 0.026 0.974 20 C 0.001 3.999 21 N -0.957 5.957 22 Si 0.949 3.051 23 H -0.278 1.278 24 H -0.292 1.292 25 H -0.218 1.218 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.102 0.898 29 H 0.110 0.890 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.332 0.668 36 H 0.045 0.955 37 H 0.121 0.879 38 H 0.025 0.975 39 H 0.069 0.931 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.975 7.645 -18.319 25.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.128 4.128 3 N -0.116 5.116 4 O 0.019 5.981 5 C -0.088 4.088 6 C -0.132 4.132 7 C -0.221 4.221 8 C 0.058 3.942 9 H 0.092 0.908 10 C -0.191 4.191 11 N -0.315 5.315 12 C -0.054 4.054 13 C 0.002 3.998 14 H 0.138 0.862 15 C -0.067 4.067 16 N -0.189 5.189 17 C -0.041 4.041 18 C -0.569 4.569 19 H 0.045 0.955 20 C -0.195 4.195 21 N -0.597 5.597 22 Si 0.771 3.229 23 H -0.204 1.204 24 H -0.218 1.218 25 H -0.140 1.140 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.121 0.879 29 H 0.128 0.872 30 H 0.112 0.888 31 H 0.120 0.880 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.149 0.851 36 H 0.063 0.937 37 H 0.139 0.861 38 H 0.044 0.956 39 H 0.087 0.913 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 15.534 9.696 -17.338 25.217 hybrid contribution 0.165 -1.289 1.096 1.700 sum 15.699 8.407 -16.242 24.103 Atomic orbital electron populations 1.20226 0.84831 1.04309 1.03462 1.23834 0.99882 0.88329 1.00782 1.73836 0.89914 1.25195 1.22648 1.84754 1.21395 1.23641 1.68349 1.24997 0.99571 0.83298 1.00962 1.20591 0.88295 0.98539 1.05737 1.21241 0.91648 0.97846 1.11408 1.19811 0.92840 0.87045 0.94471 0.90826 1.21782 1.01403 1.02422 0.93467 1.60678 1.48164 1.04891 1.17815 1.22101 0.95515 0.90420 0.97396 1.19147 1.01910 0.93107 0.85677 0.86184 1.29722 0.90989 0.91615 0.94416 1.80948 1.11768 1.13750 1.12400 1.19588 0.95559 0.91235 0.97697 1.21434 1.12186 0.94288 1.29007 0.95546 1.26075 0.96422 1.02623 0.94419 1.70099 1.30286 1.23900 1.35452 0.85693 0.78327 0.77412 0.81423 1.20388 1.21815 1.13965 0.90781 0.90960 0.87945 0.87163 0.88806 0.87956 0.92565 0.91612 0.90641 0.85093 0.93693 0.86060 0.95620 0.91318 0.92747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.48 9.80 71.24 0.70 -0.79 16 2 C 0.03 0.73 7.24 43.58 0.32 1.05 16 3 N -0.41 -11.11 12.07 -49.55 -0.60 -11.71 16 4 O 0.08 1.92 11.20 71.68 0.80 2.72 16 5 C -0.02 -0.44 7.49 25.04 0.19 -0.25 16 6 C -0.07 -0.66 10.26 71.24 0.73 0.07 16 7 C -0.22 -4.33 4.89 -19.73 -0.10 -4.43 16 8 C 0.17 2.75 2.97 44.17 0.13 2.88 16 9 H 0.07 0.98 6.80 -2.39 -0.02 0.97 16 10 C -0.13 -1.83 9.40 71.98 0.68 -1.15 16 11 N -0.68 -13.98 5.59 -495.47 -2.77 -16.74 16 12 C 0.08 1.59 4.92 86.30 0.42 2.02 16 13 C 0.02 0.73 2.42 -12.60 -0.03 0.70 16 14 H 0.12 3.72 8.14 -2.38 -0.02 3.70 16 15 C 0.25 9.53 12.97 89.47 1.16 10.69 16 16 N -0.51 -22.18 18.52 19.97 0.37 -21.81 16 17 C 0.00 -0.07 3.49 29.85 0.10 0.04 16 18 C -0.53 -28.07 9.15 25.60 0.23 -27.84 16 19 H 0.03 1.59 7.84 -2.91 -0.02 1.57 16 20 C 0.00 0.06 5.47 84.66 0.46 0.52 16 21 N -0.96 -58.86 13.96 21.45 0.30 -58.56 16 22 Si 0.95 40.32 27.47 68.60 1.88 42.20 16 23 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 24 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 25 H -0.22 -7.64 6.54 99.48 0.65 -6.99 16 26 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 27 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.10 1.92 6.94 -2.39 -0.02 1.90 16 29 H 0.11 0.54 8.14 -2.38 -0.02 0.52 16 30 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.10 0.70 7.28 -2.39 -0.02 0.69 16 32 H 0.06 0.88 7.00 -2.39 -0.02 0.87 16 33 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.07 0.91 7.45 -2.39 -0.02 0.89 16 35 H 0.33 8.15 7.39 -89.69 -0.66 7.49 16 36 H 0.04 0.90 8.05 -2.39 -0.02 0.88 16 37 H 0.12 1.98 7.44 -2.39 -0.02 1.96 16 38 H 0.03 0.96 7.57 -2.38 -0.02 0.94 16 39 H 0.07 2.29 7.19 -2.39 -0.02 2.27 16 40 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -72.14 338.12 5.32 -66.81 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: 0.33 Total: 13.57 kcal Atomic # 6 Polarization: -21.49 SS G_CDS: 5.00 Total: -16.50 kcal Atomic # 7 Polarization: -106.12 SS G_CDS: -2.70 Total: -108.82 kcal Atomic # 8 Polarization: 1.92 SS G_CDS: 0.80 Total: 2.72 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 1.88 Total: 42.20 kcal Total: -72.14 5.32 -66.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113951167.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.612 kcal (2) G-P(sol) polarization free energy of solvation -72.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds