Wall clock time and date at job start Mon Mar 30 2020 02:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30181 * 126.80371 * 2 1 4 4 O 1.20923 * 111.60649 * 179.97438 * 3 2 1 5 5 C 1.34039 * 111.56325 * 359.76471 * 4 3 2 6 6 C 1.50705 * 126.77328 * 180.28901 * 5 4 3 7 7 C 1.35450 * 106.45030 * 0.37988 * 5 4 3 8 8 C 1.50697 * 128.00517 * 179.91273 * 7 5 4 9 9 H 1.09001 * 109.46613 * 164.68017 * 8 7 5 10 10 C 1.53006 * 109.47239 * 284.67626 * 8 7 5 11 11 N 1.46898 * 109.47356 * 44.67699 * 8 7 5 12 12 C 1.46906 * 110.99961 * 154.99814 * 11 8 7 13 13 C 1.52998 * 109.46913 * 180.02562 * 12 11 8 14 14 H 1.08998 * 109.47467 * 304.99839 * 13 12 11 15 15 C 1.47202 * 109.47019 * 65.00630 * 13 12 11 16 16 N 6.18675 * 106.49492 * 129.37959 * 2 1 3 17 17 C 1.52998 * 109.46894 * 184.99880 * 13 12 11 18 18 C 1.50701 * 109.47171 * 174.99990 * 17 13 12 19 19 H 1.07993 * 119.99912 * 0.02562 * 18 17 13 20 20 C 1.37880 * 120.00042 * 179.97438 * 18 17 13 21 21 N 1.31506 * 120.00002 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 119.99854 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47071 * 89.99809 * 22 20 18 24 24 H 1.48498 * 109.46770 * 209.99583 * 22 20 18 25 25 H 1.48497 * 109.47353 * 329.99686 * 22 20 18 26 26 H 1.08998 * 109.46987 * 270.01965 * 1 2 3 27 27 H 1.09002 * 109.47260 * 30.01795 * 1 2 3 28 28 H 1.08998 * 109.47412 * 150.02246 * 1 2 3 29 29 H 1.09001 * 109.46775 * 270.11406 * 6 5 4 30 30 H 1.08996 * 109.47071 * 30.10936 * 6 5 4 31 31 H 1.09001 * 109.47091 * 150.11059 * 6 5 4 32 32 H 1.09001 * 109.47002 * 60.00070 * 10 8 7 33 33 H 1.08993 * 109.46955 * 180.02562 * 10 8 7 34 34 H 1.09000 * 109.47050 * 300.00336 * 10 8 7 35 35 H 1.00895 * 110.99835 * 31.04813 * 11 8 7 36 36 H 1.08996 * 109.46904 * 300.00505 * 12 11 8 37 37 H 1.08996 * 109.46971 * 60.00210 * 12 11 8 38 38 H 1.09005 * 109.47707 * 295.00284 * 17 13 12 39 39 H 1.09007 * 109.47198 * 55.00211 * 17 13 12 40 40 H 0.97002 * 120.00378 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4537 0.7254 0.0005 5 6 3.6024 -0.6068 0.0060 6 6 4.9021 -1.3695 0.0144 7 6 2.3539 -1.1320 0.0005 8 6 1.9591 -2.5864 0.0015 9 1 0.9059 -2.6767 0.2677 10 6 2.1855 -3.1773 -1.3916 11 7 2.7760 -3.3149 0.9811 12 6 2.0835 -4.5228 1.4498 13 6 2.9631 -5.2528 2.4667 14 1 3.9386 -5.4551 2.0244 15 6 3.1317 -4.4117 3.6630 16 7 3.2635 -3.7637 4.5853 17 6 2.2983 -6.5730 2.8613 18 6 3.2197 -7.3485 3.7672 19 1 4.1830 -6.9402 4.0351 20 6 2.8326 -8.5787 4.2549 21 7 3.6364 -9.2551 5.0458 22 14 1.1661 -9.2844 3.7920 23 1 1.2979 -10.0940 2.5541 24 1 0.6692 -10.1449 4.8956 25 1 0.2064 -8.1756 3.5585 26 1 -0.3633 0.0004 1.0277 27 1 -0.3634 0.8898 -0.5141 28 1 -0.3634 -0.8901 -0.5135 29 1 5.2209 -1.5554 -1.0112 30 1 5.6632 -0.7848 0.5311 31 1 4.7623 -2.3199 0.5294 32 1 3.2387 -3.0868 -1.6578 33 1 1.8995 -4.2290 -1.3910 34 1 1.5793 -2.6366 -2.1185 35 1 3.0286 -2.7195 1.7555 36 1 1.1413 -4.2418 1.9203 37 1 1.8850 -5.1795 0.6029 38 1 1.3637 -6.3676 3.3833 39 1 2.0927 -7.1584 1.9650 40 1 3.3643 -10.1207 5.3886 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113951169.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:00 Heat of formation + Delta-G solvation = 50.235670 kcal Electronic energy + Delta-G solvation = -21239.075121 eV Core-core repulsion = 18055.927913 eV Total energy + Delta-G solvation = -3183.147208 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -45.91420 -39.29135 -37.69131 -35.83917 -35.22380 -34.36028 -33.21578 -30.94456 -29.61917 -28.48523 -28.28774 -25.26413 -23.60685 -23.30151 -21.89388 -20.67956 -18.93815 -18.66307 -18.37366 -17.94298 -16.84522 -16.50468 -15.87768 -15.40169 -14.89501 -14.79103 -14.52581 -14.33469 -14.30475 -14.15537 -14.01628 -13.86512 -13.63613 -13.43695 -13.27704 -13.15664 -13.03622 -12.75046 -12.71946 -12.39333 -12.12549 -11.98426 -11.83418 -11.63787 -11.49893 -11.25850 -10.83668 -10.69995 -10.07049 -9.42083 -8.21765 -6.27184 0.49940 1.18856 1.45183 1.48189 1.57881 1.97384 1.98496 2.20088 2.43733 3.07279 3.14738 3.23437 3.26797 3.59202 3.84468 4.03229 4.18251 4.39336 4.43275 4.49175 4.58260 4.61675 4.65198 4.72589 4.76175 4.78167 4.88453 4.93035 5.00295 5.07649 5.16995 5.21203 5.29020 5.34979 5.50823 5.52652 5.67254 6.04800 6.25487 6.29619 6.77507 6.83872 7.29867 7.37468 8.95215 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026487 B = 0.003827 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.870089 B = 7315.129206 C = 7609.488789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.019 3.981 3 N -0.403 5.403 4 O 0.074 5.926 5 C -0.007 4.007 6 C -0.081 4.081 7 C -0.220 4.220 8 C 0.168 3.832 9 H 0.066 0.934 10 C -0.132 4.132 11 N -0.681 5.681 12 C 0.075 3.925 13 C 0.025 3.975 14 H 0.125 0.875 15 C 0.248 3.752 16 N -0.510 5.510 17 C -0.003 4.003 18 C -0.530 4.530 19 H 0.029 0.971 20 C 0.002 3.998 21 N -0.956 5.956 22 Si 0.948 3.052 23 H -0.256 1.256 24 H -0.299 1.299 25 H -0.236 1.236 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.101 0.899 29 H 0.104 0.896 30 H 0.085 0.915 31 H 0.112 0.888 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.060 0.940 35 H 0.333 0.667 36 H 0.041 0.959 37 H 0.122 0.878 38 H 0.025 0.975 39 H 0.066 0.934 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.312 13.716 -18.035 23.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.141 4.141 3 N -0.113 5.113 4 O 0.013 5.987 5 C -0.071 4.071 6 C -0.138 4.138 7 C -0.225 4.225 8 C 0.059 3.941 9 H 0.084 0.916 10 C -0.190 4.190 11 N -0.312 5.312 12 C -0.055 4.055 13 C 0.003 3.997 14 H 0.143 0.857 15 C -0.068 4.068 16 N -0.188 5.188 17 C -0.042 4.042 18 C -0.568 4.568 19 H 0.047 0.953 20 C -0.194 4.194 21 N -0.596 5.596 22 Si 0.771 3.229 23 H -0.180 1.180 24 H -0.226 1.226 25 H -0.159 1.159 26 H 0.102 0.898 27 H 0.099 0.901 28 H 0.120 0.880 29 H 0.123 0.877 30 H 0.103 0.897 31 H 0.130 0.870 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.151 0.849 36 H 0.059 0.941 37 H 0.140 0.860 38 H 0.043 0.957 39 H 0.085 0.915 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.926 15.542 -17.047 23.817 hybrid contribution -0.859 -1.029 1.014 1.680 sum -6.785 14.513 -16.033 22.665 Atomic orbital electron populations 1.20309 0.84221 1.04930 1.04002 1.23990 1.00200 0.88444 1.01417 1.73835 0.89805 1.25157 1.22479 1.84753 1.21527 1.23874 1.68514 1.24895 0.99704 0.82723 0.99793 1.20695 0.88359 0.99315 1.05478 1.21205 0.91735 0.97585 1.11946 1.19748 0.95686 0.84056 0.94651 0.91579 1.21771 1.02724 1.01343 0.93140 1.60739 1.43993 1.08530 1.17982 1.22106 0.93792 0.92086 0.97540 1.19136 1.03566 0.91429 0.85590 0.85721 1.29778 0.91011 0.91579 0.94439 1.81024 1.11189 1.14318 1.12255 1.19588 0.95459 0.91540 0.97603 1.21426 1.03104 1.03116 1.29155 0.95294 1.26044 1.01490 0.97454 0.94456 1.70091 1.39402 1.14668 1.35487 0.85694 0.79677 0.79269 0.78244 1.18008 1.22569 1.15944 0.89829 0.90089 0.88015 0.87724 0.89661 0.86974 0.91839 0.90669 0.92084 0.84912 0.94057 0.85980 0.95695 0.91541 0.92756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.17 10.23 71.23 0.73 -0.44 16 2 C 0.02 0.41 7.33 43.57 0.32 0.73 16 3 N -0.40 -10.67 12.07 -49.54 -0.60 -11.27 16 4 O 0.07 1.85 11.20 71.64 0.80 2.66 16 5 C -0.01 -0.15 7.35 25.04 0.18 0.03 16 6 C -0.08 -1.23 10.27 71.24 0.73 -0.50 16 7 C -0.22 -4.44 4.94 -19.74 -0.10 -4.54 16 8 C 0.17 2.79 2.96 44.17 0.13 2.92 16 9 H 0.07 1.02 7.35 -2.39 -0.02 1.00 16 10 C -0.13 -1.77 9.40 71.98 0.68 -1.10 16 11 N -0.68 -13.10 4.48 -495.45 -2.22 -15.32 16 12 C 0.07 1.54 4.92 86.30 0.42 1.97 16 13 C 0.02 0.74 2.42 -12.60 -0.03 0.71 16 14 H 0.13 3.64 8.14 -2.39 -0.02 3.62 16 15 C 0.25 9.28 12.97 89.46 1.16 10.44 16 16 N -0.51 -21.71 18.53 19.99 0.37 -21.34 16 17 C 0.00 -0.11 3.49 29.85 0.10 0.00 16 18 C -0.53 -27.69 9.15 25.60 0.23 -27.46 16 19 H 0.03 1.72 7.84 -2.91 -0.02 1.70 16 20 C 0.00 0.11 5.47 84.66 0.46 0.57 16 21 N -0.96 -58.34 13.96 21.45 0.30 -58.05 16 22 Si 0.95 40.29 27.47 68.60 1.88 42.17 16 23 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 24 H -0.30 -13.20 7.11 99.48 0.71 -12.49 16 25 H -0.24 -8.89 6.54 99.48 0.65 -8.24 16 26 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.10 1.11 7.88 -2.39 -0.02 1.09 16 29 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.11 1.83 5.99 -2.39 -0.01 1.82 16 32 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.07 0.89 7.45 -2.39 -0.02 0.87 16 34 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.33 7.61 7.03 -89.70 -0.63 6.98 16 36 H 0.04 0.86 8.05 -2.39 -0.02 0.84 16 37 H 0.12 1.95 7.44 -2.39 -0.02 1.93 16 38 H 0.02 0.95 7.20 -2.38 -0.02 0.93 16 39 H 0.07 2.17 7.57 -2.38 -0.02 2.16 16 40 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -70.32 338.47 5.93 -64.39 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: 0.36 Total: 13.42 kcal Atomic # 6 Polarization: -21.69 SS G_CDS: 5.03 Total: -16.66 kcal Atomic # 7 Polarization: -103.83 SS G_CDS: -2.15 Total: -105.98 kcal Atomic # 8 Polarization: 1.85 SS G_CDS: 0.80 Total: 2.66 kcal Atomic # 14 Polarization: 40.29 SS G_CDS: 1.88 Total: 42.17 kcal Total: -70.32 5.93 -64.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113951169.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.625 kcal (2) G-P(sol) polarization free energy of solvation -70.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds