Wall clock time and date at job start Mon Mar 30 2020 02:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30175 * 126.79821 * 2 1 4 4 O 1.20924 * 111.59970 * 180.24925 * 3 2 1 5 5 C 1.34036 * 111.56832 * 359.74203 * 4 3 2 6 6 C 1.50701 * 126.77575 * 180.02562 * 5 4 3 7 7 C 1.35448 * 106.44649 * 359.97438 * 5 4 3 8 8 C 1.50708 * 128.00689 * 179.97438 * 7 5 4 9 9 H 1.09003 * 109.47038 * 15.00112 * 8 7 5 10 10 C 1.52998 * 109.47160 * 254.99985 * 8 7 5 11 11 N 1.46893 * 109.46798 * 135.00013 * 8 7 5 12 12 C 1.46910 * 110.99761 * 204.99886 * 11 8 7 13 13 C 1.53002 * 109.46906 * 180.02562 * 12 11 8 14 14 H 1.08996 * 109.47407 * 304.99784 * 13 12 11 15 15 C 1.47206 * 109.47021 * 65.00197 * 13 12 11 16 16 N 5.86350 * 46.23296 * 161.91457 * 2 1 3 17 17 C 1.52997 * 109.46817 * 185.00004 * 13 12 11 18 18 C 1.50698 * 109.46933 * 175.00167 * 17 13 12 19 19 H 1.08003 * 120.00121 * 0.02562 * 18 17 13 20 20 C 1.37882 * 119.99840 * 179.97438 * 18 17 13 21 21 N 1.31513 * 119.99940 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 119.99921 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47570 * 89.99954 * 22 20 18 24 24 H 1.48509 * 109.46793 * 209.99830 * 22 20 18 25 25 H 1.48499 * 109.47276 * 329.99570 * 22 20 18 26 26 H 1.08999 * 109.47182 * 270.16927 * 1 2 3 27 27 H 1.09000 * 109.46691 * 30.17537 * 1 2 3 28 28 H 1.09006 * 109.46731 * 150.16828 * 1 2 3 29 29 H 1.09001 * 109.47046 * 269.99612 * 6 5 4 30 30 H 1.09001 * 109.47233 * 29.99952 * 6 5 4 31 31 H 1.08998 * 109.47004 * 149.99811 * 6 5 4 32 32 H 1.08998 * 109.47237 * 180.02562 * 10 8 7 33 33 H 1.09002 * 109.47595 * 300.00416 * 10 8 7 34 34 H 1.09008 * 109.46957 * 60.00061 * 10 8 7 35 35 H 1.00897 * 111.00751 * 328.95660 * 11 8 7 36 36 H 1.08997 * 109.46998 * 60.00442 * 12 11 8 37 37 H 1.08997 * 109.46873 * 300.00074 * 12 11 8 38 38 H 1.08998 * 109.47192 * 294.99969 * 17 13 12 39 39 H 1.09000 * 109.47325 * 55.00085 * 17 13 12 40 40 H 0.97004 * 120.00087 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4538 0.7254 -0.0049 5 6 3.6025 -0.6067 -0.0033 6 6 4.9022 -1.3694 -0.0075 7 6 2.3540 -1.1320 0.0040 8 6 1.9591 -2.5864 0.0081 9 1 2.8233 -3.1968 0.2704 10 6 1.4579 -2.9827 -1.3820 11 7 0.8910 -2.8009 0.9934 12 6 0.8799 -4.1928 1.4632 13 6 -0.2438 -4.3772 2.4852 14 1 -0.1284 -3.6485 3.2875 15 6 -1.5446 -4.1786 1.8253 16 7 -2.5489 -4.0252 1.3145 17 6 -0.1774 -5.7908 3.0665 18 6 -1.2048 -5.9330 4.1598 19 1 -1.8418 -5.0988 4.4141 20 6 -1.3324 -7.1287 4.8346 21 7 -2.2287 -7.2527 5.7889 22 14 -0.2312 -8.5718 4.3941 23 1 1.0024 -8.5232 5.2193 24 1 -0.9527 -9.8431 4.6567 25 1 0.1318 -8.4967 2.9561 26 1 -0.3633 0.0030 1.0276 27 1 -0.3633 0.8884 -0.5166 28 1 -0.3633 -0.8916 -0.5113 29 1 5.2112 -1.5551 -1.0361 30 1 5.6682 -0.7849 0.5021 31 1 4.7673 -2.3200 0.5086 32 1 1.1718 -4.0344 -1.3789 33 1 0.5937 -2.3723 -1.6444 34 1 2.2506 -2.8234 -2.1131 35 1 0.9780 -2.1589 1.7668 36 1 1.8372 -4.4265 1.9291 37 1 0.7147 -4.8603 0.6176 38 1 -0.3810 -6.5172 2.2798 39 1 0.8167 -5.9687 3.4768 40 1 -2.3183 -8.0937 6.2639 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113951171.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:03 Heat of formation + Delta-G solvation = 68.677876 kcal Electronic energy + Delta-G solvation = -21214.675798 eV Core-core repulsion = 18032.328303 eV Total energy + Delta-G solvation = -3182.347494 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -45.05583 -38.14506 -36.34330 -34.43730 -33.85880 -33.26403 -31.89584 -29.84131 -28.71444 -27.85182 -26.82482 -24.22378 -22.56973 -21.57176 -20.67610 -20.24963 -17.79510 -17.49977 -16.89470 -16.74301 -15.50906 -15.23067 -14.55292 -14.30311 -14.08788 -13.67255 -13.63496 -13.32069 -13.25259 -12.94818 -12.83033 -12.59964 -12.47867 -12.31495 -12.26477 -12.12114 -11.83740 -11.54235 -11.37229 -11.24956 -10.90645 -10.76329 -10.44208 -10.02221 -9.91196 -9.78042 -9.37020 -9.31331 -8.64734 -8.49178 -6.13224 -4.14132 1.28193 2.07917 2.93496 3.22953 3.32205 3.32668 3.66208 3.74934 3.91630 4.19599 4.29485 4.35477 4.65823 4.73637 4.79773 5.01656 5.06688 5.10262 5.19067 5.21545 5.36052 5.44448 5.50847 5.54959 5.58472 5.62922 5.66878 5.76303 5.84152 5.87853 6.04663 6.19398 6.25139 6.26936 6.87616 6.93907 7.08679 7.31923 7.60673 8.17143 8.37701 8.52149 8.90426 9.46431 10.99899 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024383 B = 0.003887 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.057953 B = 7200.932107 C = 7687.410948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.044 3.956 3 N -0.373 5.373 4 O 0.093 5.907 5 C -0.030 4.030 6 C -0.074 4.074 7 C -0.203 4.203 8 C 0.166 3.834 9 H 0.058 0.942 10 C -0.137 4.137 11 N -0.683 5.683 12 C 0.063 3.937 13 C 0.020 3.980 14 H 0.104 0.896 15 C 0.252 3.748 16 N -0.469 5.469 17 C -0.005 4.005 18 C -0.529 4.529 19 H 0.074 0.926 20 C 0.071 3.929 21 N -0.896 5.896 22 Si 0.877 3.123 23 H -0.275 1.275 24 H -0.287 1.287 25 H -0.264 1.264 26 H 0.082 0.918 27 H 0.067 0.933 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.053 0.947 35 H 0.345 0.655 36 H 0.050 0.950 37 H 0.079 0.921 38 H 0.025 0.975 39 H 0.032 0.968 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.146 10.274 -12.554 22.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.115 4.115 3 N -0.080 5.080 4 O 0.030 5.970 5 C -0.095 4.095 6 C -0.131 4.131 7 C -0.207 4.207 8 C 0.056 3.944 9 H 0.075 0.925 10 C -0.195 4.195 11 N -0.316 5.316 12 C -0.066 4.066 13 C -0.002 4.002 14 H 0.122 0.878 15 C -0.065 4.065 16 N -0.146 5.146 17 C -0.044 4.044 18 C -0.567 4.567 19 H 0.092 0.908 20 C -0.131 4.131 21 N -0.534 5.534 22 Si 0.704 3.296 23 H -0.201 1.201 24 H -0.213 1.213 25 H -0.189 1.189 26 H 0.101 0.899 27 H 0.086 0.914 28 H 0.110 0.890 29 H 0.106 0.894 30 H 0.102 0.898 31 H 0.110 0.890 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.164 0.836 36 H 0.068 0.932 37 H 0.098 0.902 38 H 0.044 0.956 39 H 0.050 0.950 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 13.855 11.598 -13.666 22.654 hybrid contribution 1.513 -1.672 0.795 2.390 sum 15.367 9.926 -12.871 22.369 Atomic orbital electron populations 1.20218 0.85411 1.03670 1.03850 1.23473 0.99155 0.87827 1.01083 1.73856 0.89214 1.24034 1.20915 1.84804 1.21851 1.22305 1.68079 1.24246 0.98087 0.84083 1.03040 1.20349 0.90119 0.98642 1.04038 1.21044 0.91563 0.97501 1.10605 1.19692 0.92711 0.87594 0.94376 0.92450 1.21793 1.01294 1.02041 0.94360 1.60607 1.47127 1.05643 1.18178 1.22176 0.97250 0.89192 0.98030 1.18934 0.83687 1.02516 0.95023 0.87837 1.28716 0.94170 0.91518 0.92142 1.81053 1.11857 1.10519 1.11168 1.19630 0.98478 0.89401 0.96846 1.21025 1.18776 0.99902 1.16950 0.90789 1.24994 0.95085 0.98502 0.94514 1.69905 1.34220 1.26199 1.23119 0.86819 0.80907 0.82318 0.79514 1.20075 1.21296 1.18856 0.89948 0.91367 0.88976 0.89437 0.89827 0.89046 0.91825 0.91798 0.92755 0.83621 0.93172 0.90223 0.95630 0.94991 0.92543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.81 9.80 36.01 0.35 -0.46 16 2 C 0.04 0.52 7.24 -82.10 -0.59 -0.07 16 3 N -0.37 -4.92 12.07 33.42 0.40 -4.52 16 4 O 0.09 1.09 11.20 17.19 0.19 1.28 16 5 C -0.03 -0.28 7.49 -35.30 -0.26 -0.55 16 6 C -0.07 -0.40 10.26 36.01 0.37 -0.03 16 7 C -0.20 -2.10 4.89 -104.42 -0.51 -2.62 16 8 C 0.17 1.60 2.97 -68.87 -0.20 1.40 16 9 H 0.06 0.48 6.80 -51.93 -0.35 0.13 16 10 C -0.14 -1.32 9.40 37.16 0.35 -0.97 16 11 N -0.68 -7.68 5.29 -107.95 -0.57 -8.25 16 12 C 0.06 0.78 4.85 -3.82 -0.02 0.77 16 13 C 0.02 0.34 2.35 -93.40 -0.22 0.12 16 14 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 15 C 0.25 4.96 13.67 -20.72 -0.28 4.68 16 16 N -0.47 -10.26 18.54 42.20 0.78 -9.48 16 17 C 0.00 -0.09 3.49 -27.89 -0.10 -0.19 16 18 C -0.53 -13.95 9.15 -34.44 -0.32 -14.27 16 19 H 0.07 2.16 7.84 -52.48 -0.41 1.74 16 20 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 21 N -0.90 -26.77 13.96 55.43 0.77 -25.99 16 22 Si 0.88 20.23 27.47 -169.99 -4.67 15.56 16 23 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 24 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 25 H -0.26 -5.73 6.54 56.52 0.37 -5.36 16 26 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.09 1.04 6.95 -51.93 -0.36 0.68 16 29 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.09 0.41 7.28 -51.93 -0.38 0.04 16 32 H 0.06 0.63 7.45 -51.93 -0.39 0.24 16 33 H 0.06 0.69 7.00 -51.93 -0.36 0.32 16 34 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16 35 H 0.34 3.81 8.31 -39.29 -0.33 3.48 16 36 H 0.05 0.54 8.05 -51.93 -0.42 0.12 16 37 H 0.08 1.00 7.43 -51.93 -0.39 0.61 16 38 H 0.03 0.54 7.20 -51.93 -0.37 0.16 16 39 H 0.03 0.61 7.57 -51.93 -0.39 0.21 16 40 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 339.35 15.07 5.11 5.11 Total: -1.00 -32.00 339.35 -5.36 -37.36 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -5.85 Total: -0.75 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: -1.53 Total: -10.32 kcal Atomic # 7 Polarization: -49.63 SS G_CDS: 1.39 Total: -48.24 kcal Atomic # 8 Polarization: 1.09 SS G_CDS: 0.19 Total: 1.28 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -4.67 Total: 15.56 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.00 -5.36 -37.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113951171.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.040 kcal (2) G-P(sol) polarization free energy of solvation -32.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds