Wall clock time and date at job start Mon Mar 30 2020 02:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30175 * 126.79821 * 2 1 4 4 O 1.20924 * 111.59970 * 180.24925 * 3 2 1 5 5 C 1.34036 * 111.56832 * 359.74203 * 4 3 2 6 6 C 1.50701 * 126.77575 * 180.02562 * 5 4 3 7 7 C 1.35448 * 106.44649 * 359.97438 * 5 4 3 8 8 C 1.50708 * 128.00689 * 179.97438 * 7 5 4 9 9 H 1.09003 * 109.47038 * 15.00112 * 8 7 5 10 10 C 1.52998 * 109.47160 * 254.99985 * 8 7 5 11 11 N 1.46893 * 109.46798 * 135.00013 * 8 7 5 12 12 C 1.46910 * 110.99761 * 204.99886 * 11 8 7 13 13 C 1.53002 * 109.46906 * 180.02562 * 12 11 8 14 14 H 1.08996 * 109.47407 * 304.99784 * 13 12 11 15 15 C 1.47206 * 109.47021 * 65.00197 * 13 12 11 16 16 N 5.86350 * 46.23296 * 161.91457 * 2 1 3 17 17 C 1.52997 * 109.46817 * 185.00004 * 13 12 11 18 18 C 1.50698 * 109.46933 * 175.00167 * 17 13 12 19 19 H 1.08003 * 120.00121 * 0.02562 * 18 17 13 20 20 C 1.37882 * 119.99840 * 179.97438 * 18 17 13 21 21 N 1.31513 * 119.99940 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 119.99921 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47570 * 89.99954 * 22 20 18 24 24 H 1.48509 * 109.46793 * 209.99830 * 22 20 18 25 25 H 1.48499 * 109.47276 * 329.99570 * 22 20 18 26 26 H 1.08999 * 109.47182 * 270.16927 * 1 2 3 27 27 H 1.09000 * 109.46691 * 30.17537 * 1 2 3 28 28 H 1.09006 * 109.46731 * 150.16828 * 1 2 3 29 29 H 1.09001 * 109.47046 * 269.99612 * 6 5 4 30 30 H 1.09001 * 109.47233 * 29.99952 * 6 5 4 31 31 H 1.08998 * 109.47004 * 149.99811 * 6 5 4 32 32 H 1.08998 * 109.47237 * 180.02562 * 10 8 7 33 33 H 1.09002 * 109.47595 * 300.00416 * 10 8 7 34 34 H 1.09008 * 109.46957 * 60.00061 * 10 8 7 35 35 H 1.00897 * 111.00751 * 328.95660 * 11 8 7 36 36 H 1.08997 * 109.46998 * 60.00442 * 12 11 8 37 37 H 1.08997 * 109.46873 * 300.00074 * 12 11 8 38 38 H 1.08998 * 109.47192 * 294.99969 * 17 13 12 39 39 H 1.09000 * 109.47325 * 55.00085 * 17 13 12 40 40 H 0.97004 * 120.00087 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4538 0.7254 -0.0049 5 6 3.6025 -0.6067 -0.0033 6 6 4.9022 -1.3694 -0.0075 7 6 2.3540 -1.1320 0.0040 8 6 1.9591 -2.5864 0.0081 9 1 2.8233 -3.1968 0.2704 10 6 1.4579 -2.9827 -1.3820 11 7 0.8910 -2.8009 0.9934 12 6 0.8799 -4.1928 1.4632 13 6 -0.2438 -4.3772 2.4852 14 1 -0.1284 -3.6485 3.2875 15 6 -1.5446 -4.1786 1.8253 16 7 -2.5489 -4.0252 1.3145 17 6 -0.1774 -5.7908 3.0665 18 6 -1.2048 -5.9330 4.1598 19 1 -1.8418 -5.0988 4.4141 20 6 -1.3324 -7.1287 4.8346 21 7 -2.2287 -7.2527 5.7889 22 14 -0.2312 -8.5718 4.3941 23 1 1.0024 -8.5232 5.2193 24 1 -0.9527 -9.8431 4.6567 25 1 0.1318 -8.4967 2.9561 26 1 -0.3633 0.0030 1.0276 27 1 -0.3633 0.8884 -0.5166 28 1 -0.3633 -0.8916 -0.5113 29 1 5.2112 -1.5551 -1.0361 30 1 5.6682 -0.7849 0.5021 31 1 4.7673 -2.3200 0.5086 32 1 1.1718 -4.0344 -1.3789 33 1 0.5937 -2.3723 -1.6444 34 1 2.2506 -2.8234 -2.1131 35 1 0.9780 -2.1589 1.7668 36 1 1.8372 -4.4265 1.9291 37 1 0.7147 -4.8603 0.6176 38 1 -0.3810 -6.5172 2.2798 39 1 0.8167 -5.9687 3.4768 40 1 -2.3183 -8.0937 6.2639 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113951171.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:03 Heat of formation + Delta-G solvation = 47.772333 kcal Electronic energy + Delta-G solvation = -21215.582330 eV Core-core repulsion = 18032.328303 eV Total energy + Delta-G solvation = -3183.254027 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -45.89637 -39.16971 -37.62100 -35.73706 -35.03919 -34.45692 -33.34952 -30.91342 -29.59902 -28.46199 -28.28676 -25.23801 -23.64675 -23.24693 -21.53216 -21.01413 -18.89790 -18.64944 -18.62431 -17.74334 -16.57849 -16.25458 -15.97126 -15.42062 -15.07689 -14.90465 -14.61944 -14.30181 -14.24147 -13.95003 -13.80592 -13.72715 -13.53168 -13.42439 -13.37701 -13.18866 -13.07039 -12.73180 -12.67878 -12.39096 -12.21782 -12.05045 -11.69985 -11.61332 -11.49683 -11.24910 -10.76534 -10.70650 -10.07119 -9.30354 -8.22323 -6.28033 0.53841 1.23777 1.44515 1.48204 1.58161 2.11077 2.18197 2.26557 2.43549 3.05990 3.14717 3.32292 3.40723 3.60120 3.90024 4.05653 4.18593 4.38005 4.43504 4.46577 4.53984 4.67192 4.70780 4.75846 4.79274 4.81357 4.81764 4.90276 4.96800 5.03816 5.10832 5.22600 5.27718 5.28735 5.47749 5.50196 5.66867 6.11414 6.28948 6.47434 6.80296 6.96780 7.36641 7.37148 8.94798 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024383 B = 0.003887 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.057953 B = 7200.932107 C = 7687.410948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.031 3.969 3 N -0.405 5.405 4 O 0.082 5.918 5 C -0.018 4.018 6 C -0.075 4.075 7 C -0.214 4.214 8 C 0.173 3.827 9 H 0.084 0.916 10 C -0.136 4.136 11 N -0.695 5.695 12 C 0.076 3.924 13 C 0.025 3.975 14 H 0.112 0.888 15 C 0.263 3.737 16 N -0.516 5.516 17 C -0.003 4.003 18 C -0.531 4.531 19 H 0.026 0.974 20 C 0.001 3.999 21 N -0.956 5.956 22 Si 0.950 3.050 23 H -0.257 1.257 24 H -0.298 1.298 25 H -0.234 1.234 26 H 0.079 0.921 27 H 0.068 0.932 28 H 0.087 0.913 29 H 0.105 0.895 30 H 0.095 0.905 31 H 0.107 0.893 32 H 0.062 0.938 33 H 0.044 0.956 34 H 0.068 0.932 35 H 0.346 0.654 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.028 0.972 39 H 0.064 0.936 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.829 9.139 -13.844 25.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.128 4.128 3 N -0.114 5.114 4 O 0.021 5.979 5 C -0.082 4.082 6 C -0.132 4.132 7 C -0.218 4.218 8 C 0.064 3.936 9 H 0.101 0.899 10 C -0.194 4.194 11 N -0.328 5.328 12 C -0.054 4.054 13 C 0.003 3.997 14 H 0.130 0.870 15 C -0.054 4.054 16 N -0.194 5.194 17 C -0.042 4.042 18 C -0.569 4.569 19 H 0.045 0.955 20 C -0.195 4.195 21 N -0.597 5.597 22 Si 0.773 3.227 23 H -0.181 1.181 24 H -0.225 1.225 25 H -0.157 1.157 26 H 0.098 0.902 27 H 0.087 0.913 28 H 0.106 0.894 29 H 0.124 0.876 30 H 0.114 0.886 31 H 0.126 0.874 32 H 0.081 0.919 33 H 0.063 0.937 34 H 0.087 0.913 35 H 0.165 0.835 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.047 0.953 39 H 0.082 0.918 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 17.567 10.490 -14.981 25.359 hybrid contribution 0.321 -1.221 1.218 1.754 sum 17.889 9.269 -13.764 24.400 Atomic orbital electron populations 1.20148 0.85472 1.03460 1.03567 1.23694 0.99431 0.88559 1.01093 1.73847 0.89937 1.25055 1.22562 1.84765 1.21249 1.23710 1.68201 1.24982 0.99437 0.83180 1.00625 1.20611 0.88207 0.98773 1.05589 1.21128 0.91619 0.97473 1.11596 1.19702 0.92936 0.87356 0.93630 0.89871 1.21789 1.01111 1.01543 0.94925 1.60522 1.48570 1.05092 1.18580 1.22036 0.96380 0.89946 0.97021 1.19052 0.83676 1.00580 0.96388 0.87026 1.29463 0.94470 0.90297 0.91129 1.81052 1.13318 1.11902 1.13101 1.19583 0.97875 0.91716 0.94986 1.21432 1.19047 0.98293 1.18152 0.95522 1.26072 0.96864 1.02228 0.94357 1.70101 1.37166 1.27128 1.25328 0.85669 0.78888 0.77120 0.81056 1.18119 1.22489 1.15704 0.90235 0.91309 0.89416 0.87626 0.88587 0.87436 0.91860 0.93665 0.91303 0.83483 0.90018 0.89862 0.95347 0.91783 0.92745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.53 9.80 71.24 0.70 -0.84 16 2 C 0.03 0.72 7.24 43.58 0.32 1.03 16 3 N -0.40 -10.52 12.07 -49.56 -0.60 -11.12 16 4 O 0.08 1.82 11.20 71.67 0.80 2.63 16 5 C -0.02 -0.29 7.49 25.04 0.19 -0.10 16 6 C -0.07 -0.49 10.26 71.24 0.73 0.24 16 7 C -0.21 -3.96 4.89 -19.73 -0.10 -4.05 16 8 C 0.17 2.76 2.97 44.17 0.13 2.90 16 9 H 0.08 0.95 6.80 -2.39 -0.02 0.93 16 10 C -0.14 -2.27 9.40 71.98 0.68 -1.59 16 11 N -0.69 -13.77 5.29 -495.43 -2.62 -16.39 16 12 C 0.08 1.58 4.85 86.30 0.42 2.00 16 13 C 0.02 0.77 2.35 -12.60 -0.03 0.74 16 14 H 0.11 3.32 8.14 -2.39 -0.02 3.30 16 15 C 0.26 10.25 13.67 89.43 1.22 11.47 16 16 N -0.52 -22.86 18.54 20.02 0.37 -22.49 16 17 C 0.00 -0.10 3.49 29.85 0.10 0.01 16 18 C -0.53 -28.08 9.15 25.60 0.23 -27.85 16 19 H 0.03 1.61 7.84 -2.91 -0.02 1.59 16 20 C 0.00 0.06 5.47 84.66 0.46 0.53 16 21 N -0.96 -58.80 13.96 21.45 0.30 -58.50 16 22 Si 0.95 40.39 27.47 68.60 1.88 42.27 16 23 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 24 H -0.30 -13.15 7.11 99.48 0.71 -12.44 16 25 H -0.23 -8.76 6.54 99.48 0.65 -8.11 16 26 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.09 2.00 6.95 -2.38 -0.02 1.98 16 29 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.11 0.41 7.28 -2.39 -0.02 0.39 16 32 H 0.06 1.06 7.45 -2.39 -0.02 1.04 16 33 H 0.04 0.92 7.00 -2.39 -0.02 0.90 16 34 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 35 H 0.35 6.85 8.31 -89.70 -0.75 6.10 16 36 H 0.08 1.26 8.05 -2.39 -0.02 1.24 16 37 H 0.08 1.73 7.43 -2.39 -0.02 1.72 16 38 H 0.03 1.09 7.20 -2.39 -0.02 1.07 16 39 H 0.06 2.11 7.57 -2.39 -0.02 2.09 16 40 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -72.84 339.35 5.44 -67.39 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: 0.25 Total: 11.73 kcal Atomic # 6 Polarization: -20.57 SS G_CDS: 5.06 Total: -15.52 kcal Atomic # 7 Polarization: -105.96 SS G_CDS: -2.55 Total: -108.51 kcal Atomic # 8 Polarization: 1.82 SS G_CDS: 0.80 Total: 2.63 kcal Atomic # 14 Polarization: 40.39 SS G_CDS: 1.88 Total: 42.27 kcal Total: -72.84 5.44 -67.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113951171.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.165 kcal (2) G-P(sol) polarization free energy of solvation -72.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds