Wall clock time and date at job start Mon Mar 30 2020 02:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35316 * 126.12494 * 2 1 4 4 C 1.39873 * 107.91549 * 180.15062 * 3 2 1 5 5 C 1.50706 * 125.89614 * 179.86980 * 4 3 2 6 6 C 1.50699 * 109.47195 * 124.71217 * 5 4 3 7 7 O 1.21290 * 119.99838 * 359.97438 * 6 5 4 8 8 N 1.34779 * 119.99568 * 179.97438 * 6 5 4 9 9 C 1.37102 * 119.99488 * 179.97438 * 8 6 5 10 10 H 1.08001 * 119.99533 * 137.65292 * 9 8 6 11 11 C 1.38948 * 120.00206 * 317.65049 * 9 8 6 12 12 N 1.31408 * 120.00009 * 340.27965 * 11 9 8 13 13 Si 1.86797 * 119.99898 * 160.28127 * 11 9 8 14 14 H 1.48500 * 109.47011 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47338 * 120.00150 * 13 11 9 16 16 H 1.48502 * 109.47066 * 239.99969 * 13 11 9 17 17 C 1.46501 * 120.00304 * 359.97438 * 8 6 5 18 18 C 1.54968 * 110.92202 * 131.62504 * 17 8 6 19 19 C 1.54265 * 104.15874 * 156.29734 * 18 17 8 20 20 C 1.53880 * 106.64032 * 336.44529 * 19 18 17 21 21 C 1.54272 * 106.59754 * 359.97438 * 20 19 18 22 22 N 1.30836 * 108.20331 * 359.59957 * 4 3 2 23 23 N 1.34946 * 126.12900 * 179.71302 * 2 1 3 24 24 H 0.97006 * 126.03454 * 359.97438 * 23 2 1 25 25 H 1.09000 * 109.47436 * 270.26478 * 1 2 3 26 26 H 1.08998 * 109.47088 * 30.26782 * 1 2 3 27 27 H 1.09007 * 109.47358 * 150.26566 * 1 2 3 28 28 H 1.07994 * 126.04369 * 0.02665 * 3 2 1 29 29 H 1.09001 * 109.46957 * 4.70887 * 5 4 3 30 30 H 1.09004 * 109.46748 * 244.70881 * 5 4 3 31 31 H 0.96997 * 119.99923 * 180.02562 * 12 11 9 32 32 H 1.08996 * 110.67190 * 8.32202 * 17 8 6 33 33 H 1.08999 * 110.47702 * 37.64058 * 18 17 8 34 34 H 1.08998 * 110.53089 * 274.97823 * 18 17 8 35 35 H 1.08994 * 110.03036 * 217.13974 * 19 18 17 36 36 H 1.08996 * 110.03576 * 95.75492 * 19 18 17 37 37 H 1.08999 * 110.03434 * 119.25994 * 20 19 18 38 38 H 1.08997 * 110.03337 * 240.64121 * 20 19 18 39 39 H 1.08995 * 110.48420 * 142.28792 * 21 20 19 40 40 H 1.09003 * 110.48535 * 264.80118 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3047 1.0930 0.0000 4 6 3.6334 0.6559 -0.0035 5 6 4.8543 1.5395 -0.0075 6 6 5.7389 1.1793 1.1581 7 8 5.4101 0.2927 1.9177 8 7 6.8954 1.8424 1.3565 9 6 7.6999 1.5151 2.4173 10 1 8.7700 1.4540 2.2847 11 6 7.1386 1.2619 3.6629 12 7 5.9298 1.6968 3.9395 13 14 8.1023 0.3035 4.9443 14 1 9.4276 -0.0711 4.3889 15 1 8.2916 1.1451 6.1531 16 1 7.3537 -0.9259 5.3095 17 6 7.2927 2.9129 0.4387 18 6 7.7254 4.1794 1.2200 19 6 8.6490 4.9307 0.2390 20 6 9.1928 3.8809 -0.7460 21 6 8.5813 2.5273 -0.3293 22 7 3.6333 -0.6524 0.0032 23 7 2.3026 -1.0899 0.0055 24 1 2.0055 -2.0134 0.0104 25 1 -0.3634 0.0047 1.0276 26 1 -0.3633 0.8876 -0.5180 27 1 -0.3634 -0.8924 -0.5097 28 1 1.9740 2.1211 0.0004 29 1 4.5483 2.5823 0.0771 30 1 5.4034 1.3962 -0.9382 31 1 5.5381 1.5204 4.8091 32 1 6.4845 3.1450 -0.2547 33 1 8.2712 3.9031 2.1221 34 1 6.8575 4.7895 1.4700 35 1 9.4722 5.3946 0.7822 36 1 8.0826 5.6902 -0.2999 37 1 8.8894 4.1305 -1.7628 38 1 10.2799 3.8361 -0.6814 39 1 8.3372 1.9320 -1.2091 40 1 9.2667 1.9829 0.3204 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119789148.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:52 Heat of formation + Delta-G solvation = 37.723574 kcal Electronic energy + Delta-G solvation = -22064.319293 eV Core-core repulsion = 18880.629519 eV Total energy + Delta-G solvation = -3183.689774 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.74951 -38.60737 -36.60764 -33.41948 -32.60398 -31.54998 -30.98920 -28.11590 -27.99457 -26.71799 -26.63453 -24.36087 -20.61775 -20.04728 -19.84135 -19.62844 -18.42401 -16.97088 -16.17639 -15.91420 -14.91790 -14.74462 -14.31892 -14.05430 -13.79414 -13.42334 -13.30584 -12.97532 -12.67825 -12.60782 -12.54254 -12.05827 -11.81598 -11.56706 -11.35060 -11.00038 -10.77631 -10.69398 -10.52776 -10.40266 -10.37217 -10.06810 -9.93117 -9.85685 -9.71460 -8.78949 -8.56550 -8.15828 -7.81144 -6.90272 -5.96646 -3.68305 2.33480 3.28558 3.32030 3.38879 3.48876 3.50166 4.37526 4.50663 4.86648 5.05626 5.13797 5.25361 5.27490 5.29610 5.41719 5.49166 5.57409 5.78995 5.88701 5.95585 6.04466 6.10510 6.13118 6.16813 6.23138 6.24991 6.31716 6.37531 6.47502 6.50789 6.60208 6.64665 6.93123 6.98935 7.12871 7.26600 7.72644 7.77376 8.27442 8.42865 9.23040 9.37319 9.84861 10.50225 11.12186 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014485 B = 0.006491 C = 0.004923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.580446 B = 4312.721783 C = 5686.608855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.069 3.931 3 C -0.265 4.265 4 C 0.109 3.891 5 C -0.061 4.061 6 C 0.482 3.518 7 O -0.517 6.517 8 N -0.451 5.451 9 C -0.338 4.338 10 H 0.076 0.924 11 C 0.073 3.927 12 N -0.830 5.830 13 Si 0.903 3.097 14 H -0.272 1.272 15 H -0.288 1.288 16 H -0.284 1.284 17 C 0.130 3.870 18 C -0.121 4.121 19 C -0.123 4.123 20 C -0.120 4.120 21 C -0.133 4.133 22 N -0.259 5.259 23 N -0.484 5.484 24 H 0.431 0.569 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.065 0.935 28 H 0.141 0.859 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.260 0.740 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.054 0.946 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.394 3.169 -10.124 11.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.060 4.060 3 C -0.294 4.294 4 C -0.059 4.059 5 C -0.104 4.104 6 C 0.267 3.733 7 O -0.392 6.392 8 N -0.174 5.174 9 C -0.465 4.465 10 H 0.094 0.906 11 C -0.137 4.137 12 N -0.464 5.464 13 Si 0.730 3.270 14 H -0.197 1.197 15 H -0.215 1.215 16 H -0.210 1.210 17 C 0.024 3.976 18 C -0.160 4.160 19 C -0.161 4.161 20 C -0.158 4.158 21 C -0.172 4.172 22 N -0.081 5.081 23 N -0.192 5.192 24 H 0.273 0.727 25 H 0.095 0.905 26 H 0.101 0.899 27 H 0.084 0.916 28 H 0.159 0.841 29 H 0.110 0.890 30 H 0.106 0.894 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.105 0.895 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.006 1.671 -9.569 10.928 hybrid contribution -0.309 -0.067 0.759 0.822 sum -5.315 1.603 -8.811 10.414 Atomic orbital electron populations 1.20376 0.87902 1.03236 1.03055 1.20955 0.94144 0.88135 1.02716 1.21076 0.91831 0.98775 1.17727 1.21731 0.94688 0.91441 0.98011 1.20168 0.92182 0.97701 1.00347 1.19556 0.83455 0.84173 0.86110 1.90560 1.71416 1.31280 1.45974 1.43209 1.20075 1.29289 1.24821 1.18780 0.90349 1.50543 0.86818 0.90644 1.25130 0.95546 0.95812 0.97253 1.69883 1.15340 1.39602 1.21533 0.86308 0.79800 0.80186 0.80665 1.19693 1.21487 1.20988 1.22015 0.95040 0.88802 0.91704 1.22542 0.98691 0.95521 0.99206 1.22100 0.99044 0.97571 0.97400 1.22055 0.99650 0.95706 0.98384 1.22686 0.98715 0.96234 0.99589 1.77470 0.94565 1.12853 1.23189 1.46333 1.04610 1.07707 1.60578 0.72665 0.90532 0.89943 0.91607 0.84068 0.89030 0.89427 0.93043 0.91142 0.89537 0.92595 0.92568 0.92761 0.92662 0.92593 0.92684 0.90709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.85 10.43 36.01 0.38 -0.48 16 2 C 0.07 1.04 7.21 -82.26 -0.59 0.45 16 3 C -0.26 -4.64 10.64 -40.01 -0.43 -5.06 16 4 C 0.11 2.28 6.02 -82.40 -0.50 1.78 16 5 C -0.06 -1.26 4.61 -29.03 -0.13 -1.39 16 6 C 0.48 12.55 6.96 -10.98 -0.08 12.47 16 7 O -0.52 -15.85 13.19 5.55 0.07 -15.77 16 8 N -0.45 -11.25 2.57 -105.58 -0.27 -11.52 16 9 C -0.34 -9.27 7.42 -14.93 -0.11 -9.38 16 10 H 0.08 2.02 7.02 -52.49 -0.37 1.65 16 11 C 0.07 2.08 4.33 -17.47 -0.08 2.01 16 12 N -0.83 -25.08 11.67 55.50 0.65 -24.43 16 13 Si 0.90 22.62 29.60 -169.99 -5.03 17.59 16 14 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 15 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 16 H -0.28 -7.41 7.11 56.52 0.40 -7.01 16 17 C 0.13 2.55 3.16 -65.90 -0.21 2.34 16 18 C -0.12 -2.26 6.32 -25.03 -0.16 -2.41 16 19 C -0.12 -1.80 6.80 -25.61 -0.17 -1.97 16 20 C -0.12 -1.70 6.80 -25.61 -0.17 -1.87 16 21 C -0.13 -2.31 6.42 -25.07 -0.16 -2.47 16 22 N -0.26 -5.60 12.04 33.67 0.41 -5.20 16 23 N -0.48 -8.09 7.36 33.48 0.25 -7.84 16 24 H 0.43 5.59 8.96 -182.61 -1.64 3.95 16 25 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 28 H 0.14 2.12 8.06 -52.49 -0.42 1.70 16 29 H 0.09 1.67 7.63 -51.93 -0.40 1.28 16 30 H 0.09 1.58 7.95 -51.93 -0.41 1.17 16 31 H 0.26 7.62 8.31 -40.82 -0.34 7.29 16 32 H 0.07 1.24 5.96 -51.93 -0.31 0.93 16 33 H 0.09 1.85 6.96 -51.93 -0.36 1.49 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.07 1.44 6.92 -51.93 -0.36 1.08 16 LS Contribution 325.90 15.07 4.91 4.91 Total: -1.00 -35.96 325.90 -8.64 -44.59 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -7.21 Total: 3.65 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: -2.41 Total: -5.98 kcal Atomic # 7 Polarization: -50.02 SS G_CDS: 1.03 Total: -48.99 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: 0.07 Total: -15.77 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.03 Total: 17.59 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -35.96 -8.64 -44.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119789148.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.316 kcal (2) G-P(sol) polarization free energy of solvation -35.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds