Wall clock time and date at job start Mon Mar 30 2020 02:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35316 * 126.12494 * 2 1 4 4 C 1.39873 * 107.91549 * 180.15062 * 3 2 1 5 5 C 1.50706 * 125.89614 * 179.86980 * 4 3 2 6 6 C 1.50699 * 109.47195 * 124.71217 * 5 4 3 7 7 O 1.21290 * 119.99838 * 359.97438 * 6 5 4 8 8 N 1.34779 * 119.99568 * 179.97438 * 6 5 4 9 9 C 1.37102 * 119.99488 * 179.97438 * 8 6 5 10 10 H 1.08001 * 119.99533 * 137.65292 * 9 8 6 11 11 C 1.38948 * 120.00206 * 317.65049 * 9 8 6 12 12 N 1.31408 * 120.00009 * 340.27965 * 11 9 8 13 13 Si 1.86797 * 119.99898 * 160.28127 * 11 9 8 14 14 H 1.48500 * 109.47011 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47338 * 120.00150 * 13 11 9 16 16 H 1.48502 * 109.47066 * 239.99969 * 13 11 9 17 17 C 1.46501 * 120.00304 * 359.97438 * 8 6 5 18 18 C 1.54968 * 110.92202 * 131.62504 * 17 8 6 19 19 C 1.54265 * 104.15874 * 156.29734 * 18 17 8 20 20 C 1.53880 * 106.64032 * 336.44529 * 19 18 17 21 21 C 1.54272 * 106.59754 * 359.97438 * 20 19 18 22 22 N 1.30836 * 108.20331 * 359.59957 * 4 3 2 23 23 N 1.34946 * 126.12900 * 179.71302 * 2 1 3 24 24 H 0.97006 * 126.03454 * 359.97438 * 23 2 1 25 25 H 1.09000 * 109.47436 * 270.26478 * 1 2 3 26 26 H 1.08998 * 109.47088 * 30.26782 * 1 2 3 27 27 H 1.09007 * 109.47358 * 150.26566 * 1 2 3 28 28 H 1.07994 * 126.04369 * 0.02665 * 3 2 1 29 29 H 1.09001 * 109.46957 * 4.70887 * 5 4 3 30 30 H 1.09004 * 109.46748 * 244.70881 * 5 4 3 31 31 H 0.96997 * 119.99923 * 180.02562 * 12 11 9 32 32 H 1.08996 * 110.67190 * 8.32202 * 17 8 6 33 33 H 1.08999 * 110.47702 * 37.64058 * 18 17 8 34 34 H 1.08998 * 110.53089 * 274.97823 * 18 17 8 35 35 H 1.08994 * 110.03036 * 217.13974 * 19 18 17 36 36 H 1.08996 * 110.03576 * 95.75492 * 19 18 17 37 37 H 1.08999 * 110.03434 * 119.25994 * 20 19 18 38 38 H 1.08997 * 110.03337 * 240.64121 * 20 19 18 39 39 H 1.08995 * 110.48420 * 142.28792 * 21 20 19 40 40 H 1.09003 * 110.48535 * 264.80118 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3047 1.0930 0.0000 4 6 3.6334 0.6559 -0.0035 5 6 4.8543 1.5395 -0.0075 6 6 5.7389 1.1793 1.1581 7 8 5.4101 0.2927 1.9177 8 7 6.8954 1.8424 1.3565 9 6 7.6999 1.5151 2.4173 10 1 8.7700 1.4540 2.2847 11 6 7.1386 1.2619 3.6629 12 7 5.9298 1.6968 3.9395 13 14 8.1023 0.3035 4.9443 14 1 9.4276 -0.0711 4.3889 15 1 8.2916 1.1451 6.1531 16 1 7.3537 -0.9259 5.3095 17 6 7.2927 2.9129 0.4387 18 6 7.7254 4.1794 1.2200 19 6 8.6490 4.9307 0.2390 20 6 9.1928 3.8809 -0.7460 21 6 8.5813 2.5273 -0.3293 22 7 3.6333 -0.6524 0.0032 23 7 2.3026 -1.0899 0.0055 24 1 2.0055 -2.0134 0.0104 25 1 -0.3634 0.0047 1.0276 26 1 -0.3633 0.8876 -0.5180 27 1 -0.3634 -0.8924 -0.5097 28 1 1.9740 2.1211 0.0004 29 1 4.5483 2.5823 0.0771 30 1 5.4034 1.3962 -0.9382 31 1 5.5381 1.5204 4.8091 32 1 6.4845 3.1450 -0.2547 33 1 8.2712 3.9031 2.1221 34 1 6.8575 4.7895 1.4700 35 1 9.4722 5.3946 0.7822 36 1 8.0826 5.6902 -0.2999 37 1 8.8894 4.1305 -1.7628 38 1 10.2799 3.8361 -0.6814 39 1 8.3372 1.9320 -1.2091 40 1 9.2667 1.9829 0.3204 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000119789148.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:51 Heat of formation + Delta-G solvation = 13.431328 kcal Electronic energy + Delta-G solvation = -22065.372684 eV Core-core repulsion = 18880.629519 eV Total energy + Delta-G solvation = -3184.743164 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.10398 -40.37000 -38.24665 -35.26801 -34.14569 -33.37177 -32.34200 -29.72435 -29.36769 -28.25732 -27.74860 -26.33623 -22.28894 -21.43821 -21.38882 -20.88464 -20.12779 -18.33529 -18.00506 -17.61723 -16.75226 -16.24868 -15.86715 -15.70728 -15.39950 -14.83627 -14.64606 -14.48526 -14.05562 -13.81553 -13.73832 -13.53492 -13.32122 -13.20939 -12.94751 -12.72151 -12.58983 -12.41787 -12.15655 -11.96251 -11.91554 -11.78567 -11.35808 -11.29828 -11.07542 -10.69856 -10.20314 -9.84028 -9.43996 -8.94145 -8.12839 -5.85485 1.04798 1.33971 1.42051 1.48741 1.86290 2.09692 2.35551 2.57383 3.23835 3.32939 3.77017 3.87550 3.99153 4.02848 4.17296 4.30169 4.48043 4.52054 4.58559 4.63341 4.76853 4.78251 4.81757 4.88449 4.90770 4.94287 5.01828 5.11963 5.15328 5.26318 5.32594 5.34708 5.50339 5.60629 5.64418 5.71102 5.77609 6.29268 6.57690 6.88583 7.13605 7.35789 7.82728 8.50670 8.95470 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014485 B = 0.006491 C = 0.004923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.580446 B = 4312.721783 C = 5686.608855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.087 3.913 3 C -0.292 4.292 4 C 0.084 3.916 5 C -0.050 4.050 6 C 0.466 3.534 7 O -0.574 6.574 8 N -0.463 5.463 9 C -0.338 4.338 10 H 0.075 0.925 11 C 0.022 3.978 12 N -0.865 5.865 13 Si 0.956 3.044 14 H -0.259 1.259 15 H -0.275 1.275 16 H -0.303 1.303 17 C 0.119 3.881 18 C -0.121 4.121 19 C -0.113 4.113 20 C -0.110 4.110 21 C -0.130 4.130 22 N -0.317 5.317 23 N -0.479 5.479 24 H 0.444 0.556 25 H 0.085 0.915 26 H 0.104 0.896 27 H 0.091 0.909 28 H 0.162 0.838 29 H 0.113 0.887 30 H 0.110 0.890 31 H 0.252 0.748 32 H 0.095 0.905 33 H 0.049 0.951 34 H 0.050 0.950 35 H 0.064 0.936 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.967 4.416 -12.162 14.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.042 4.042 3 C -0.321 4.321 4 C -0.083 4.083 5 C -0.092 4.092 6 C 0.253 3.747 7 O -0.454 6.454 8 N -0.184 5.184 9 C -0.466 4.466 10 H 0.092 0.908 11 C -0.184 4.184 12 N -0.501 5.501 13 Si 0.782 3.218 14 H -0.182 1.182 15 H -0.200 1.200 16 H -0.230 1.230 17 C 0.015 3.985 18 C -0.159 4.159 19 C -0.151 4.151 20 C -0.148 4.148 21 C -0.169 4.169 22 N -0.140 5.140 23 N -0.189 5.189 24 H 0.289 0.711 25 H 0.104 0.896 26 H 0.122 0.878 27 H 0.110 0.890 28 H 0.180 0.820 29 H 0.131 0.869 30 H 0.128 0.872 31 H 0.061 0.939 32 H 0.113 0.887 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.083 0.917 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.531 2.950 -11.638 13.219 hybrid contribution -0.169 -0.490 1.330 1.427 sum -5.701 2.460 -10.309 12.034 Atomic orbital electron populations 1.20581 0.83619 1.05658 1.04314 1.21767 0.96463 0.86737 0.99206 1.21429 0.90840 1.00637 1.19173 1.21953 0.95986 0.91566 0.98790 1.20065 0.91654 0.98842 0.98606 1.20493 0.83948 0.83378 0.86841 1.90511 1.72868 1.33681 1.48327 1.43475 1.19673 1.30466 1.24816 1.18971 0.90658 1.49501 0.87485 0.90754 1.25868 0.96395 0.96821 0.99327 1.69992 1.17045 1.41522 1.21580 0.85471 0.78881 0.78265 0.79151 1.18241 1.20029 1.23005 1.22376 0.96959 0.87740 0.91472 1.22473 0.99011 0.95622 0.98811 1.22055 0.98648 0.97774 0.96623 1.22030 1.00185 0.93038 0.99579 1.22627 0.96946 0.98255 0.99076 1.77337 0.97472 1.13741 1.25432 1.46355 1.03594 1.09036 1.59929 0.71080 0.89603 0.87754 0.89014 0.82010 0.86916 0.87182 0.93884 0.88692 0.93201 0.93158 0.91678 0.90131 0.89772 0.91400 0.91489 0.93516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.34 10.43 71.24 0.74 -0.60 16 2 C 0.09 2.50 7.21 41.41 0.30 2.80 16 3 C -0.29 -9.91 10.64 21.99 0.23 -9.68 16 4 C 0.08 3.52 6.02 43.11 0.26 3.77 16 5 C -0.05 -2.03 4.61 29.10 0.13 -1.90 16 6 C 0.47 24.89 6.96 87.66 0.61 25.50 16 7 O -0.57 -36.70 13.19 -3.06 -0.04 -36.74 16 8 N -0.46 -23.51 2.57 -606.32 -1.56 -25.07 16 9 C -0.34 -19.12 7.42 84.04 0.62 -18.49 16 10 H 0.07 4.11 7.02 -2.91 -0.02 4.09 16 11 C 0.02 1.28 4.33 84.93 0.37 1.65 16 12 N -0.87 -54.46 11.67 21.66 0.25 -54.21 16 13 Si 0.96 48.02 29.60 68.60 2.03 50.05 16 14 H -0.26 -12.22 7.11 99.48 0.71 -11.52 16 15 H -0.27 -13.03 7.11 99.48 0.71 -12.32 16 16 H -0.30 -16.04 7.11 99.48 0.71 -15.33 16 17 C 0.12 4.56 3.16 46.31 0.15 4.70 16 18 C -0.12 -4.42 6.32 31.70 0.20 -4.22 16 19 C -0.11 -2.96 6.80 31.32 0.21 -2.75 16 20 C -0.11 -2.73 6.80 31.32 0.21 -2.52 16 21 C -0.13 -4.31 6.42 31.67 0.20 -4.11 16 22 N -0.32 -13.95 12.04 -47.38 -0.57 -14.52 16 23 N -0.48 -15.75 7.36 -48.00 -0.35 -16.11 16 24 H 0.44 11.21 8.96 -213.33 -1.91 9.30 16 25 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 28 H 0.16 4.58 8.06 -2.91 -0.02 4.55 16 29 H 0.11 4.00 7.63 -2.39 -0.02 3.99 16 30 H 0.11 3.87 7.95 -2.39 -0.02 3.85 16 31 H 0.25 15.51 8.31 -92.71 -0.77 14.74 16 32 H 0.10 3.16 5.96 -2.39 -0.01 3.14 16 33 H 0.05 2.18 6.96 -2.39 -0.02 2.16 16 34 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.07 1.55 8.14 -2.39 -0.02 1.54 16 39 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.05 1.79 6.92 -2.39 -0.02 1.77 16 Total: -1.00 -83.27 325.90 3.14 -80.13 By element: Atomic # 1 Polarization: 23.19 SS G_CDS: -0.87 Total: 22.32 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: 4.25 Total: -5.84 kcal Atomic # 7 Polarization: -107.68 SS G_CDS: -2.23 Total: -109.92 kcal Atomic # 8 Polarization: -36.70 SS G_CDS: -0.04 Total: -36.74 kcal Atomic # 14 Polarization: 48.02 SS G_CDS: 2.03 Total: 50.05 kcal Total: -83.27 3.14 -80.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119789148.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.558 kcal (2) G-P(sol) polarization free energy of solvation -83.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds