Wall clock time and date at job start Mon Mar 30 2020 01:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38841 * 120.75152 * 2 1 4 4 C 1.38069 * 119.31382 * 180.02562 * 3 2 1 5 5 C 1.50696 * 119.57589 * 180.02562 * 4 3 2 6 6 N 1.31949 * 120.84253 * 359.72572 * 4 3 2 7 7 C 1.32348 * 121.63932 * 0.56029 * 6 4 3 8 8 N 1.39389 * 119.69911 * 179.71299 * 7 6 4 9 9 C 1.34775 * 119.99598 * 4.88735 * 8 7 6 10 10 O 1.21573 * 120.00510 * 354.91611 * 9 8 7 11 11 N 1.34784 * 119.99375 * 174.91947 * 9 8 7 12 12 C 1.46493 * 120.00382 * 359.97438 * 11 9 8 13 13 C 1.46497 * 119.99607 * 180.02562 * 11 9 8 14 14 H 1.09002 * 109.47515 * 359.97438 * 13 11 9 15 15 C 1.53004 * 109.47120 * 239.99765 * 13 11 9 16 16 C 1.50700 * 109.47495 * 119.99924 * 13 11 9 17 17 H 1.07997 * 119.99772 * 359.97438 * 16 13 11 18 18 C 1.37875 * 120.00235 * 179.97438 * 16 13 11 19 19 N 1.31516 * 119.99801 * 359.97438 * 18 16 13 20 20 Si 1.86801 * 120.00169 * 179.97438 * 18 16 13 21 21 H 1.48502 * 109.47039 * 89.99720 * 20 18 16 22 22 H 1.48495 * 109.47324 * 210.00117 * 20 18 16 23 23 H 1.48501 * 109.46781 * 329.99853 * 20 18 16 24 24 C 1.38344 * 120.75128 * 180.02562 * 2 1 3 25 25 H 1.08995 * 109.46706 * 269.97548 * 1 2 3 26 26 H 1.09000 * 109.46899 * 29.97317 * 1 2 3 27 27 H 1.08998 * 109.46812 * 149.97613 * 1 2 3 28 28 H 1.07997 * 120.34645 * 0.02562 * 3 2 1 29 29 H 1.09007 * 109.46607 * 89.99956 * 5 4 3 30 30 H 1.08995 * 109.47294 * 209.99646 * 5 4 3 31 31 H 1.08999 * 109.47328 * 330.00381 * 5 4 3 32 32 H 0.97001 * 119.99955 * 184.88496 * 8 7 6 33 33 H 1.09004 * 109.47367 * 270.00273 * 12 11 9 34 34 H 1.09006 * 109.47298 * 30.00091 * 12 11 9 35 35 H 1.09001 * 109.47107 * 150.00179 * 12 11 9 36 36 H 1.09002 * 109.46889 * 300.00332 * 15 13 11 37 37 H 1.08999 * 109.47631 * 180.02562 * 15 13 11 38 38 H 1.09004 * 109.47096 * 59.99392 * 15 13 11 39 39 H 0.97003 * 119.99927 * 180.02562 * 19 18 16 40 40 H 1.08005 * 120.45457 * 359.94732 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2170 1.1932 0.0000 4 6 3.5972 1.1585 -0.0005 5 6 4.3737 2.4501 0.0000 6 7 4.2450 0.0091 0.0044 7 6 3.6043 -1.1490 -0.0010 8 7 4.3295 -2.3394 -0.0016 9 6 5.6729 -2.3101 0.1028 10 8 6.2594 -1.2453 0.1044 11 7 6.3660 -3.4615 0.2054 12 6 5.6591 -4.7447 0.2041 13 6 7.8261 -3.4297 0.3195 14 1 8.1695 -2.3953 0.3032 15 6 8.4461 -4.1909 -0.8541 16 6 8.2432 -4.0775 1.6147 17 1 7.4953 -4.4729 2.2860 18 6 9.5794 -4.1653 1.9427 19 7 10.4902 -3.6842 1.1250 20 14 10.0963 -4.9676 3.5485 21 1 10.3098 -6.4207 3.3296 22 1 11.3581 -4.3484 4.0276 23 1 9.0316 -4.7713 4.5650 24 6 2.2144 -1.1889 -0.0005 25 1 -0.3632 -0.0004 1.0276 26 1 -0.3633 0.8902 -0.5134 27 1 -0.3633 -0.8898 -0.5142 28 1 1.6950 2.1386 0.0004 29 1 4.5612 2.7607 1.0279 30 1 5.3234 2.3033 -0.5142 31 1 3.7979 3.2204 -0.5130 32 1 3.8672 -3.1889 -0.0771 33 1 5.4037 -5.0199 1.2274 34 1 4.7474 -4.6567 -0.3868 35 1 6.3003 -5.5122 -0.2293 36 1 8.1028 -5.2253 -0.8382 37 1 9.5325 -4.1677 -0.7691 38 1 8.1444 -3.7225 -1.7910 39 1 11.4304 -3.7463 1.3555 40 1 1.6942 -2.1354 -0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126653868.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:20 Heat of formation + Delta-G solvation = -0.489320 kcal Electronic energy + Delta-G solvation = -21527.166592 eV Core-core repulsion = 18341.819783 eV Total energy + Delta-G solvation = -3185.346809 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.88844 -40.52889 -37.35916 -36.11530 -34.97995 -34.73188 -32.43986 -30.89933 -28.82433 -28.13186 -27.64224 -27.27697 -24.48152 -23.02246 -22.09602 -20.52804 -19.23432 -18.49647 -18.01698 -16.98250 -16.92918 -16.74972 -16.59410 -15.94436 -15.49899 -14.91568 -14.60876 -14.41605 -14.23554 -14.05658 -13.60994 -13.49164 -13.32848 -13.26728 -13.15072 -13.02731 -12.92666 -12.70967 -12.58863 -12.45441 -12.19128 -12.12806 -11.46918 -11.26991 -11.14090 -10.53228 -10.31583 -9.95590 -9.44997 -9.02431 -8.13953 -6.30751 0.20554 0.45023 1.40328 1.42498 1.51711 1.62197 2.23218 2.41565 2.93334 2.98335 3.13590 3.52627 3.79293 4.05905 4.22063 4.28276 4.34583 4.58448 4.60752 4.67597 4.74164 4.75900 4.82566 4.88177 4.89412 4.97629 4.99482 5.05942 5.09793 5.29420 5.39144 5.41432 5.50652 5.53454 5.67214 5.92111 6.00221 6.13147 6.18428 6.76768 6.93421 7.33054 7.40623 7.73917 8.90427 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025948 B = 0.004139 C = 0.003953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.842045 B = 6763.971301 C = 7081.931518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.014 4.014 3 C -0.208 4.208 4 C 0.133 3.867 5 C -0.100 4.100 6 N -0.536 5.536 7 C 0.359 3.641 8 N -0.661 5.661 9 C 0.681 3.319 10 O -0.589 6.589 11 N -0.615 5.615 12 C 0.083 3.917 13 C 0.279 3.721 14 H 0.006 0.994 15 C -0.132 4.132 16 C -0.538 4.538 17 H 0.059 0.941 18 C 0.015 3.985 19 N -0.918 5.918 20 Si 0.967 3.033 21 H -0.265 1.265 22 H -0.286 1.286 23 H -0.273 1.273 24 C -0.216 4.216 25 H 0.089 0.911 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.165 0.835 29 H 0.079 0.921 30 H 0.050 0.950 31 H 0.108 0.892 32 H 0.426 0.574 33 H 0.056 0.944 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.051 0.949 37 H 0.069 0.931 38 H 0.017 0.983 39 H 0.265 0.735 40 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.308 3.351 -3.083 22.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.022 4.022 3 C -0.229 4.229 4 C -0.005 4.005 5 C -0.157 4.157 6 N -0.253 5.253 7 C 0.127 3.873 8 N -0.313 5.313 9 C 0.382 3.618 10 O -0.465 6.465 11 N -0.351 5.351 12 C -0.059 4.059 13 C 0.177 3.823 14 H 0.024 0.976 15 C -0.190 4.190 16 C -0.577 4.577 17 H 0.077 0.923 18 C -0.185 4.185 19 N -0.557 5.557 20 Si 0.792 3.208 21 H -0.190 1.190 22 H -0.211 1.211 23 H -0.198 1.198 24 C -0.240 4.240 25 H 0.107 0.893 26 H 0.106 0.894 27 H 0.103 0.897 28 H 0.182 0.818 29 H 0.098 0.902 30 H 0.069 0.931 31 H 0.127 0.873 32 H 0.267 0.733 33 H 0.074 0.926 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.036 0.964 39 H 0.074 0.926 40 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -20.675 4.018 -3.085 21.286 hybrid contribution 0.147 -0.797 0.726 1.088 sum -20.528 3.221 -2.358 20.912 Atomic orbital electron populations 1.20872 0.86784 1.04725 1.04001 1.20532 0.98533 0.91291 0.91888 1.22032 0.93409 1.00422 1.07036 1.21651 0.92602 0.93092 0.93188 1.20757 0.99665 0.91958 1.03336 1.67435 1.41967 0.98258 1.17596 1.18624 0.88781 0.85536 0.94363 1.42784 1.05097 1.08175 1.75216 1.16326 0.81857 0.84760 0.78881 1.90941 1.68635 1.30223 1.56660 1.47523 1.08247 1.04718 1.74568 1.21766 0.96990 0.85222 1.01963 1.18440 0.73842 0.95571 0.94470 0.97607 1.21891 1.02959 0.98902 0.95276 1.21569 0.92469 1.39008 1.04618 0.92293 1.25745 0.96390 0.95897 1.00458 1.70031 1.01280 1.46405 1.37941 0.85425 0.77367 0.78863 0.79143 1.18955 1.21125 1.19823 1.21549 0.90443 1.01562 1.10439 0.89278 0.89422 0.89666 0.81785 0.90196 0.93082 0.87312 0.73279 0.92591 0.89463 0.90325 0.93025 0.91202 0.96364 0.92614 0.81755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 10.06 71.24 0.72 -0.36 16 2 C -0.01 -0.28 5.91 -19.69 -0.12 -0.40 16 3 C -0.21 -4.60 9.44 22.37 0.21 -4.39 16 4 C 0.13 4.13 6.78 42.50 0.29 4.42 16 5 C -0.10 -2.60 10.17 71.23 0.72 -1.87 16 6 N -0.54 -21.75 7.80 -181.12 -1.41 -23.17 16 7 C 0.36 12.41 7.42 132.93 0.99 13.39 16 8 N -0.66 -23.08 5.27 -322.21 -1.70 -24.77 16 9 C 0.68 31.89 8.24 179.05 1.48 33.37 16 10 O -0.59 -33.99 13.93 -3.94 -0.05 -34.04 16 11 N -0.61 -27.74 2.75 -844.85 -2.33 -30.07 16 12 C 0.08 2.65 9.49 127.77 1.21 3.86 16 13 C 0.28 15.27 2.64 44.25 0.12 15.39 16 14 H 0.01 0.39 6.90 -2.39 -0.02 0.38 16 15 C -0.13 -6.58 8.95 71.98 0.64 -5.93 16 16 C -0.54 -30.31 8.37 25.60 0.21 -30.09 16 17 H 0.06 3.23 7.64 -2.91 -0.02 3.21 16 18 C 0.01 0.82 5.30 84.65 0.45 1.27 16 19 N -0.92 -54.29 11.32 21.45 0.24 -54.05 16 20 Si 0.97 44.14 29.54 68.60 2.03 46.16 16 21 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 22 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 23 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 24 C -0.22 -5.10 9.64 22.49 0.22 -4.88 16 25 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.09 0.64 8.10 -2.39 -0.02 0.62 16 27 H 0.08 0.65 8.10 -2.39 -0.02 0.63 16 28 H 0.16 2.37 8.06 -2.91 -0.02 2.34 16 29 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 30 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.11 1.88 8.08 -2.39 -0.02 1.87 16 32 H 0.43 10.66 6.39 -92.71 -0.59 10.07 16 33 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 34 H 0.09 1.97 6.29 -2.38 -0.02 1.95 16 35 H 0.08 2.50 6.43 -2.39 -0.02 2.49 16 36 H 0.05 2.29 6.66 -2.39 -0.02 2.28 16 37 H 0.07 3.85 6.07 -2.39 -0.01 3.84 16 38 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 39 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 40 H 0.16 2.59 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -82.03 330.13 4.37 -77.66 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: 0.46 Total: 18.52 kcal Atomic # 6 Polarization: 16.62 SS G_CDS: 7.14 Total: 23.76 kcal Atomic # 7 Polarization: -126.86 SS G_CDS: -5.19 Total: -132.06 kcal Atomic # 8 Polarization: -33.99 SS G_CDS: -0.05 Total: -34.04 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.16 kcal Total: -82.03 4.37 -77.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126653868.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.171 kcal (2) G-P(sol) polarization free energy of solvation -82.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds