Wall clock time and date at job start Mon Mar 30 2020 01:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35455 * 125.56177 * 2 1 4 4 C 1.39840 * 107.86358 * 179.97438 * 3 2 1 5 5 C 1.50699 * 126.45849 * 179.97438 * 4 3 2 6 6 C 1.37875 * 107.08478 * 0.23530 * 4 3 2 7 7 C 1.46673 * 126.23479 * 179.76386 * 6 4 3 8 8 O 1.21698 * 120.00119 * 257.27343 * 7 6 4 9 9 N 1.34780 * 119.99928 * 77.26821 * 7 6 4 10 10 C 1.46959 * 120.59519 * 4.56422 * 9 7 6 11 11 C 1.53810 * 108.40130 * 124.74977 * 10 9 7 12 12 N 1.46971 * 108.57692 * 49.64004 * 11 10 9 13 13 C 1.36935 * 120.59490 * 124.62179 * 12 11 10 14 14 H 1.08000 * 120.00185 * 213.60037 * 13 12 11 15 15 C 1.38816 * 119.99847 * 33.61162 * 13 12 11 16 16 N 1.31619 * 120.00191 * 15.88338 * 15 13 12 17 17 Si 1.86802 * 119.99818 * 195.89352 * 15 13 12 18 18 H 1.48498 * 109.47159 * 59.99320 * 17 15 13 19 19 H 1.48500 * 109.47292 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.46713 * 299.99656 * 17 15 13 21 21 C 1.46962 * 118.80815 * 304.64560 * 12 11 10 22 22 C 1.46965 * 120.59203 * 184.83632 * 9 7 6 23 23 N 1.35531 * 125.56520 * 179.97438 * 2 1 3 24 24 H 0.97001 * 125.67634 * 0.03600 * 23 2 1 25 25 H 1.09000 * 109.46910 * 90.02964 * 1 2 3 26 26 H 1.08995 * 109.47039 * 210.03060 * 1 2 3 27 27 H 1.09007 * 109.47034 * 330.02891 * 1 2 3 28 28 H 1.07999 * 126.07064 * 359.95111 * 3 2 1 29 29 H 1.09002 * 109.46970 * 90.02148 * 5 4 3 30 30 H 1.08995 * 109.47089 * 330.02455 * 5 4 3 31 31 H 1.08999 * 109.46843 * 210.01914 * 5 4 3 32 32 H 1.08997 * 109.61153 * 244.53792 * 10 9 7 33 33 H 1.09005 * 109.60737 * 5.04646 * 10 9 7 34 34 H 1.08997 * 109.74345 * 289.85370 * 11 10 9 35 35 H 1.09006 * 109.53665 * 169.30031 * 11 10 9 36 36 H 0.97003 * 120.00143 * 180.02562 * 16 15 13 37 37 H 1.09004 * 109.61038 * 295.47711 * 21 12 11 38 38 H 1.09004 * 109.75174 * 175.05764 * 21 12 11 39 39 H 1.08997 * 109.61268 * 354.95092 * 22 9 7 40 40 H 1.08997 * 109.61044 * 115.46469 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1019 0.0000 4 6 3.6270 0.6768 0.0006 5 6 4.8486 1.5592 0.0003 6 6 3.6123 -0.7019 -0.0045 7 6 4.7860 -1.5814 -0.0107 8 8 5.1311 -2.1284 -1.0416 9 7 5.4824 -1.7839 1.1254 10 6 5.0210 -1.2111 2.3977 11 6 4.8835 -2.3506 3.4216 12 7 6.1211 -3.1432 3.4092 13 6 6.8291 -3.3482 4.5632 14 1 7.9063 -3.4187 4.5307 15 6 6.1622 -3.4655 5.7750 16 7 4.8660 -3.6935 5.7936 17 14 7.1043 -3.2994 7.3795 18 1 7.7360 -1.9571 7.4460 19 1 6.1696 -3.4633 8.5217 20 1 8.1563 -4.3454 7.4462 21 6 6.5854 -3.7113 2.1358 22 6 6.7199 -2.5765 1.1129 23 7 2.2953 -1.1025 0.0005 24 1 1.9834 -2.0210 0.0004 25 1 -0.3633 -0.0005 -1.0277 26 1 -0.3633 -0.8897 0.5143 27 1 -0.3633 0.8903 0.5134 28 1 1.9545 2.1269 -0.0007 29 1 5.1431 1.7724 1.0279 30 1 4.6220 2.4932 -0.5139 31 1 5.6643 1.0503 -0.5133 32 1 5.7469 -0.4806 2.7546 33 1 4.0542 -0.7290 2.2526 34 1 4.0394 -2.9862 3.1541 35 1 4.7280 -1.9308 4.4155 36 1 4.3999 -3.7752 6.6403 37 1 5.8625 -4.4438 1.7768 38 1 7.5533 -4.1921 2.2782 39 1 6.8754 -2.9964 0.1191 40 1 7.5641 -1.9410 1.3804 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127317274.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:28 Heat of formation + Delta-G solvation = 30.258338 kcal Electronic energy + Delta-G solvation = -22140.230214 eV Core-core repulsion = 18956.216724 eV Total energy + Delta-G solvation = -3184.013491 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.30881 -39.10157 -36.72422 -33.88260 -32.81933 -31.66178 -31.13307 -30.21349 -27.77043 -27.30233 -25.81512 -23.59898 -22.82746 -21.25533 -20.36169 -19.62255 -18.64940 -17.59836 -16.37981 -15.99589 -15.17499 -14.88207 -14.64111 -14.43398 -13.73475 -13.58554 -13.50178 -13.30579 -13.11667 -13.09395 -12.92866 -12.75517 -12.33841 -12.24828 -11.89830 -11.64193 -11.38489 -11.33160 -10.83676 -10.79216 -10.54605 -10.29517 -10.10994 -9.89511 -9.60641 -8.64986 -8.61727 -8.29716 -7.79133 -6.68574 -5.89698 -3.39219 2.02467 2.57727 2.87855 3.32424 3.33718 3.38615 3.39978 3.72280 4.41380 4.85447 4.89018 5.09753 5.25879 5.26723 5.33070 5.42188 5.47514 5.74805 5.76948 5.79245 5.83486 5.85634 5.92582 6.08954 6.11139 6.15286 6.19299 6.32883 6.40334 6.42957 6.75093 6.87056 6.99161 7.10168 7.15334 7.35237 7.53905 7.70617 7.82647 8.35712 8.44807 9.08634 9.69863 10.30391 11.18101 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021535 B = 0.005023 C = 0.004602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.887359 B = 5573.151845 C = 6082.200488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.029 3.971 3 C -0.198 4.198 4 C -0.120 4.120 5 C -0.082 4.082 6 C -0.023 4.023 7 C 0.581 3.419 8 O -0.551 6.551 9 N -0.580 5.580 10 C 0.083 3.917 11 C 0.164 3.836 12 N -0.589 5.589 13 C -0.262 4.262 14 H 0.065 0.935 15 C 0.010 3.990 16 N -0.900 5.900 17 Si 0.904 3.096 18 H -0.282 1.282 19 H -0.290 1.290 20 H -0.281 1.281 21 C 0.132 3.868 22 C 0.094 3.906 23 N -0.526 5.526 24 H 0.417 0.583 25 H 0.070 0.930 26 H 0.064 0.936 27 H 0.081 0.919 28 H 0.138 0.862 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.022 0.978 35 H 0.091 0.909 36 H 0.256 0.744 37 H 0.022 0.978 38 H 0.068 0.932 39 H 0.083 0.917 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.121 8.825 -9.264 14.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.086 4.086 3 C -0.222 4.222 4 C -0.127 4.127 5 C -0.140 4.140 6 C -0.137 4.137 7 C 0.367 3.633 8 O -0.430 6.430 9 N -0.311 5.311 10 C -0.041 4.041 11 C 0.037 3.963 12 N -0.312 5.312 13 C -0.392 4.392 14 H 0.083 0.917 15 C -0.190 4.190 16 N -0.543 5.543 17 Si 0.733 3.267 18 H -0.208 1.208 19 H -0.216 1.216 20 H -0.207 1.207 21 C 0.005 3.995 22 C -0.030 4.030 23 N -0.121 5.121 24 H 0.254 0.746 25 H 0.089 0.911 26 H 0.083 0.917 27 H 0.100 0.900 28 H 0.156 0.844 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.040 0.960 35 H 0.109 0.891 36 H 0.066 0.934 37 H 0.040 0.960 38 H 0.087 0.913 39 H 0.101 0.899 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.063 8.318 -9.613 14.084 hybrid contribution 0.168 -0.376 0.983 1.066 sum -5.895 7.941 -8.630 13.126 Atomic orbital electron populations 1.20339 0.87968 1.03397 1.02538 1.20360 0.93413 0.86127 1.08730 1.20404 0.91702 0.97565 1.12572 1.19710 0.95457 0.90700 1.06861 1.20175 0.94074 0.97830 1.01897 1.19953 0.83905 0.93923 1.15951 1.17234 0.82446 0.80062 0.83534 1.90781 1.70256 1.49881 1.32084 1.48030 1.25090 1.50322 1.07669 1.22780 0.99191 0.98281 0.83858 1.21149 0.88348 0.89691 0.97070 1.43917 1.26618 1.57295 1.03352 1.19107 0.90005 1.45619 0.84448 0.91723 1.25205 0.95959 0.99120 0.98672 1.70009 1.08036 1.50768 1.25495 0.86356 0.79043 0.78338 0.82920 1.20789 1.21574 1.20703 1.21302 0.98774 0.92504 0.86882 1.22306 0.84961 0.94558 1.01160 1.41717 1.04787 1.08603 1.57038 0.74630 0.91104 0.91670 0.90007 0.84432 0.91510 0.91723 0.92346 0.91675 0.90701 0.95988 0.89083 0.93402 0.95967 0.91324 0.89879 0.91585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.71 10.41 36.01 0.37 -0.33 16 2 C 0.03 0.36 7.13 -81.95 -0.58 -0.22 16 3 C -0.20 -2.56 10.66 -39.98 -0.43 -2.99 16 4 C -0.12 -1.77 5.96 -104.16 -0.62 -2.39 16 5 C -0.08 -1.07 10.20 36.01 0.37 -0.70 16 6 C -0.02 -0.37 4.95 -81.98 -0.41 -0.78 16 7 C 0.58 10.93 7.18 -12.85 -0.09 10.84 16 8 O -0.55 -11.81 16.52 5.19 0.09 -11.72 16 9 N -0.58 -10.86 2.94 -173.76 -0.51 -11.37 16 10 C 0.08 1.56 6.51 -3.37 -0.02 1.53 16 11 C 0.16 3.75 5.49 -3.36 -0.02 3.73 16 12 N -0.59 -14.34 2.94 -171.76 -0.50 -14.85 16 13 C -0.26 -6.95 9.52 -15.06 -0.14 -7.09 16 14 H 0.07 1.68 7.88 -52.49 -0.41 1.27 16 15 C 0.01 0.27 4.90 -17.43 -0.09 0.19 16 16 N -0.90 -25.35 11.52 55.49 0.64 -24.71 16 17 Si 0.90 20.97 29.58 -169.99 -5.03 15.94 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 C 0.13 2.78 6.67 -3.60 -0.02 2.76 16 22 C 0.09 1.74 6.60 -3.60 -0.02 1.72 16 23 N -0.53 -7.34 6.10 -5.69 -0.03 -7.37 16 24 H 0.42 5.13 8.96 -40.82 -0.37 4.76 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.81 7.95 -51.93 -0.41 0.40 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.07 1.31 6.17 -51.93 -0.32 0.99 16 34 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.09 2.28 6.37 -51.93 -0.33 1.95 16 36 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 37 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 1.37 7.94 -51.93 -0.41 0.96 16 39 H 0.08 1.50 6.99 -51.93 -0.36 1.14 16 40 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 329.01 15.07 4.96 4.96 Total: -1.00 -31.40 329.01 -8.08 -39.48 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -5.98 Total: 3.38 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: -1.70 Total: 6.26 kcal Atomic # 7 Polarization: -57.88 SS G_CDS: -0.41 Total: -58.29 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.09 Total: -11.72 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.03 Total: 15.94 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.40 -8.08 -39.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127317274.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.737 kcal (2) G-P(sol) polarization free energy of solvation -31.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds