Wall clock time and date at job start Mon Mar 30 2020 01:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35455 * 125.56177 * 2 1 4 4 C 1.39840 * 107.86358 * 179.97438 * 3 2 1 5 5 C 1.50699 * 126.45849 * 179.97438 * 4 3 2 6 6 C 1.37875 * 107.08478 * 0.23530 * 4 3 2 7 7 C 1.46673 * 126.23479 * 179.76386 * 6 4 3 8 8 O 1.21698 * 120.00119 * 257.27343 * 7 6 4 9 9 N 1.34780 * 119.99928 * 77.26821 * 7 6 4 10 10 C 1.46959 * 120.59519 * 4.56422 * 9 7 6 11 11 C 1.53810 * 108.40130 * 124.74977 * 10 9 7 12 12 N 1.46971 * 108.57692 * 49.64004 * 11 10 9 13 13 C 1.36935 * 120.59490 * 124.62179 * 12 11 10 14 14 H 1.08000 * 120.00185 * 213.60037 * 13 12 11 15 15 C 1.38816 * 119.99847 * 33.61162 * 13 12 11 16 16 N 1.31619 * 120.00191 * 15.88338 * 15 13 12 17 17 Si 1.86802 * 119.99818 * 195.89352 * 15 13 12 18 18 H 1.48498 * 109.47159 * 59.99320 * 17 15 13 19 19 H 1.48500 * 109.47292 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.46713 * 299.99656 * 17 15 13 21 21 C 1.46962 * 118.80815 * 304.64560 * 12 11 10 22 22 C 1.46965 * 120.59203 * 184.83632 * 9 7 6 23 23 N 1.35531 * 125.56520 * 179.97438 * 2 1 3 24 24 H 0.97001 * 125.67634 * 0.03600 * 23 2 1 25 25 H 1.09000 * 109.46910 * 90.02964 * 1 2 3 26 26 H 1.08995 * 109.47039 * 210.03060 * 1 2 3 27 27 H 1.09007 * 109.47034 * 330.02891 * 1 2 3 28 28 H 1.07999 * 126.07064 * 359.95111 * 3 2 1 29 29 H 1.09002 * 109.46970 * 90.02148 * 5 4 3 30 30 H 1.08995 * 109.47089 * 330.02455 * 5 4 3 31 31 H 1.08999 * 109.46843 * 210.01914 * 5 4 3 32 32 H 1.08997 * 109.61153 * 244.53792 * 10 9 7 33 33 H 1.09005 * 109.60737 * 5.04646 * 10 9 7 34 34 H 1.08997 * 109.74345 * 289.85370 * 11 10 9 35 35 H 1.09006 * 109.53665 * 169.30031 * 11 10 9 36 36 H 0.97003 * 120.00143 * 180.02562 * 16 15 13 37 37 H 1.09004 * 109.61038 * 295.47711 * 21 12 11 38 38 H 1.09004 * 109.75174 * 175.05764 * 21 12 11 39 39 H 1.08997 * 109.61268 * 354.95092 * 22 9 7 40 40 H 1.08997 * 109.61044 * 115.46469 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1019 0.0000 4 6 3.6270 0.6768 0.0006 5 6 4.8486 1.5592 0.0003 6 6 3.6123 -0.7019 -0.0045 7 6 4.7860 -1.5814 -0.0107 8 8 5.1311 -2.1284 -1.0416 9 7 5.4824 -1.7839 1.1254 10 6 5.0210 -1.2111 2.3977 11 6 4.8835 -2.3506 3.4216 12 7 6.1211 -3.1432 3.4092 13 6 6.8291 -3.3482 4.5632 14 1 7.9063 -3.4187 4.5307 15 6 6.1622 -3.4655 5.7750 16 7 4.8660 -3.6935 5.7936 17 14 7.1043 -3.2994 7.3795 18 1 7.7360 -1.9571 7.4460 19 1 6.1696 -3.4633 8.5217 20 1 8.1563 -4.3454 7.4462 21 6 6.5854 -3.7113 2.1358 22 6 6.7199 -2.5765 1.1129 23 7 2.2953 -1.1025 0.0005 24 1 1.9834 -2.0210 0.0004 25 1 -0.3633 -0.0005 -1.0277 26 1 -0.3633 -0.8897 0.5143 27 1 -0.3633 0.8903 0.5134 28 1 1.9545 2.1269 -0.0007 29 1 5.1431 1.7724 1.0279 30 1 4.6220 2.4932 -0.5139 31 1 5.6643 1.0503 -0.5133 32 1 5.7469 -0.4806 2.7546 33 1 4.0542 -0.7290 2.2526 34 1 4.0394 -2.9862 3.1541 35 1 4.7280 -1.9308 4.4155 36 1 4.3999 -3.7752 6.6403 37 1 5.8625 -4.4438 1.7768 38 1 7.5533 -4.1921 2.2782 39 1 6.8754 -2.9964 0.1191 40 1 7.5641 -1.9410 1.3804 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127317274.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:28 Heat of formation + Delta-G solvation = 10.917846 kcal Electronic energy + Delta-G solvation = -22141.068881 eV Core-core repulsion = 18956.216724 eV Total energy + Delta-G solvation = -3184.852157 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.42420 -40.57014 -38.42450 -35.65027 -33.91903 -33.23076 -32.37257 -31.86415 -29.09159 -28.55308 -27.19151 -25.34162 -24.47529 -22.76475 -21.35000 -21.08903 -19.98559 -19.09998 -17.97060 -17.63929 -16.70965 -16.48233 -16.08691 -15.59189 -15.45985 -15.26409 -15.07714 -14.84959 -14.34747 -14.06181 -13.91169 -13.79230 -13.55658 -13.37830 -13.23413 -13.05899 -12.86947 -12.65092 -12.56711 -12.33867 -12.27707 -12.08950 -11.98972 -11.71001 -11.14516 -10.61670 -9.93048 -9.67506 -8.86752 -8.64625 -7.91997 -5.45812 0.89039 1.23544 1.49130 1.50795 1.57643 1.83297 2.01566 2.47674 2.52811 3.23966 3.54732 3.57402 4.01646 4.16719 4.18189 4.21318 4.32681 4.34072 4.51338 4.59902 4.64418 4.68697 4.76718 4.80651 4.84234 4.87079 5.01189 5.06858 5.13714 5.15115 5.19682 5.41951 5.44400 5.50851 5.62919 5.97050 6.05294 6.31155 6.35280 6.55120 6.96725 7.08121 7.73410 8.30993 9.13450 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021535 B = 0.005023 C = 0.004602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.887359 B = 5573.151845 C = 6082.200488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.043 3.957 3 C -0.212 4.212 4 C -0.119 4.119 5 C -0.082 4.082 6 C -0.068 4.068 7 C 0.587 3.413 8 O -0.583 6.583 9 N -0.583 5.583 10 C 0.106 3.894 11 C 0.173 3.827 12 N -0.605 5.605 13 C -0.273 4.273 14 H 0.069 0.931 15 C -0.039 4.039 16 N -0.933 5.933 17 Si 0.969 3.031 18 H -0.274 1.274 19 H -0.294 1.294 20 H -0.276 1.276 21 C 0.133 3.867 22 C 0.103 3.897 23 N -0.530 5.530 24 H 0.420 0.580 25 H 0.086 0.914 26 H 0.072 0.928 27 H 0.100 0.900 28 H 0.164 0.836 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.042 0.958 32 H 0.073 0.927 33 H 0.089 0.911 34 H -0.004 1.004 35 H 0.067 0.933 36 H 0.253 0.747 37 H 0.007 0.993 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.578 10.547 -9.449 15.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.073 4.073 3 C -0.236 4.236 4 C -0.127 4.127 5 C -0.140 4.140 6 C -0.182 4.182 7 C 0.375 3.625 8 O -0.464 6.464 9 N -0.314 5.314 10 C -0.018 4.018 11 C 0.047 3.953 12 N -0.329 5.329 13 C -0.403 4.403 14 H 0.086 0.914 15 C -0.235 4.235 16 N -0.577 5.577 17 Si 0.797 3.203 18 H -0.199 1.199 19 H -0.220 1.220 20 H -0.202 1.202 21 C 0.007 3.993 22 C -0.021 4.021 23 N -0.126 5.126 24 H 0.258 0.742 25 H 0.105 0.895 26 H 0.090 0.910 27 H 0.118 0.882 28 H 0.181 0.819 29 H 0.091 0.909 30 H 0.106 0.894 31 H 0.062 0.938 32 H 0.091 0.909 33 H 0.108 0.892 34 H 0.014 0.986 35 H 0.085 0.915 36 H 0.062 0.938 37 H 0.025 0.975 38 H 0.096 0.904 39 H 0.107 0.893 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.504 10.045 -9.817 15.478 hybrid contribution 0.248 -0.929 0.979 1.372 sum -6.256 9.116 -8.838 14.155 Atomic orbital electron populations 1.20500 0.85019 1.04684 1.03937 1.21080 0.95148 0.85331 1.05762 1.20766 0.90858 0.99046 1.12907 1.20089 0.96966 0.90222 1.05392 1.20228 0.92992 0.98375 1.02361 1.19721 0.84057 0.94213 1.20164 1.17550 0.82731 0.79514 0.82747 1.90748 1.71203 1.51333 1.33084 1.48065 1.25164 1.50367 1.07769 1.22449 1.00264 0.96454 0.82660 1.20938 0.87155 0.90260 0.96974 1.44165 1.26755 1.58036 1.03920 1.19443 0.90477 1.44964 0.85401 0.91365 1.25943 0.96724 0.99186 1.01658 1.70155 1.09507 1.52180 1.25867 0.85332 0.77657 0.78529 0.78823 1.19950 1.22048 1.20161 1.21362 0.98589 0.93156 0.86207 1.22167 0.85529 0.93928 1.00452 1.41819 1.04251 1.09408 1.57120 0.74215 0.89522 0.90953 0.88164 0.81890 0.90932 0.89426 0.93847 0.90888 0.89245 0.98556 0.91502 0.93829 0.97541 0.90404 0.89331 0.90279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.13 10.41 71.24 0.74 -0.39 16 2 C 0.04 0.95 7.13 41.34 0.29 1.25 16 3 C -0.21 -4.92 10.66 22.01 0.23 -4.68 16 4 C -0.12 -3.31 5.96 -19.56 -0.12 -3.43 16 5 C -0.08 -1.99 10.20 71.24 0.73 -1.26 16 6 C -0.07 -2.18 4.95 40.35 0.20 -1.98 16 7 C 0.59 22.04 7.18 86.45 0.62 22.66 16 8 O -0.58 -25.16 16.52 -4.34 -0.07 -25.23 16 9 N -0.58 -21.70 2.94 -821.87 -2.42 -24.12 16 10 C 0.11 3.93 6.51 86.56 0.56 4.49 16 11 C 0.17 8.08 5.49 86.56 0.48 8.56 16 12 N -0.61 -29.79 2.94 -697.32 -2.05 -31.84 16 13 C -0.27 -14.50 9.52 84.03 0.80 -13.70 16 14 H 0.07 3.51 7.88 -2.91 -0.02 3.49 16 15 C -0.04 -2.07 4.90 84.86 0.42 -1.66 16 16 N -0.93 -53.48 11.52 21.65 0.25 -53.24 16 17 Si 0.97 43.11 29.58 68.60 2.03 45.14 16 18 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 19 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 20 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 21 C 0.13 5.64 6.67 86.42 0.58 6.21 16 22 C 0.10 3.78 6.60 86.42 0.57 4.35 16 23 N -0.53 -14.23 6.10 -171.93 -1.05 -15.28 16 24 H 0.42 10.16 8.96 -92.71 -0.83 9.33 16 25 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 28 H 0.16 2.85 8.06 -2.91 -0.02 2.82 16 29 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.04 1.16 7.95 -2.39 -0.02 1.14 16 32 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 33 H 0.09 3.08 6.17 -2.38 -0.01 3.07 16 34 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 35 H 0.07 3.44 6.37 -2.38 -0.02 3.42 16 36 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 37 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 38 H 0.08 3.10 7.94 -2.38 -0.02 3.08 16 39 H 0.09 3.18 6.99 -2.39 -0.02 3.17 16 40 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 Total: -1.00 -67.65 329.01 3.01 -64.64 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: 0.21 Total: 19.49 kcal Atomic # 6 Polarization: 14.33 SS G_CDS: 6.10 Total: 20.43 kcal Atomic # 7 Polarization: -119.21 SS G_CDS: -5.26 Total: -124.47 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -0.07 Total: -25.23 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -67.65 3.01 -64.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127317274.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.560 kcal (2) G-P(sol) polarization free energy of solvation -67.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds