Wall clock time and date at job start Mon Mar 30 2020 02:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35313 * 126.13152 * 2 1 4 4 C 1.39869 * 107.92520 * 180.02562 * 3 2 1 5 5 C 1.50702 * 125.89727 * 180.02562 * 4 3 2 6 6 C 1.50701 * 109.46807 * 125.00515 * 5 4 3 7 7 O 1.21282 * 120.00027 * 359.97438 * 6 5 4 8 8 N 1.34775 * 119.99714 * 179.97438 * 6 5 4 9 9 C 1.46502 * 120.00005 * 179.97438 * 8 6 5 10 10 C 1.50701 * 109.47310 * 270.00108 * 9 8 6 11 11 H 1.07997 * 119.99940 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00037 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99860 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 119.99877 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46889 * 90.00336 * 14 12 10 16 16 H 1.48502 * 109.47240 * 209.99902 * 14 12 10 17 17 H 1.48500 * 109.47486 * 330.00239 * 14 12 10 18 18 C 1.46499 * 120.00337 * 359.97438 * 8 6 5 19 19 C 1.53000 * 109.46840 * 270.00307 * 18 8 6 20 20 C 1.53003 * 117.49371 * 243.61805 * 19 18 8 21 21 C 1.53001 * 117.49608 * 174.99880 * 19 18 8 22 22 N 1.30837 * 108.20047 * 0.26290 * 4 3 2 23 23 N 1.34952 * 126.12563 * 180.02562 * 2 1 3 24 24 H 0.96999 * 126.03541 * 359.96564 * 23 2 1 25 25 H 1.09002 * 109.47183 * 89.99674 * 1 2 3 26 26 H 1.08995 * 109.47216 * 210.00096 * 1 2 3 27 27 H 1.08997 * 109.46589 * 329.99901 * 1 2 3 28 28 H 1.08004 * 126.03839 * 0.02562 * 3 2 1 29 29 H 1.08992 * 109.47320 * 4.99824 * 5 4 3 30 30 H 1.09002 * 109.46922 * 244.99604 * 5 4 3 31 31 H 1.08998 * 109.46888 * 29.99915 * 9 8 6 32 32 H 1.08994 * 109.47490 * 149.99977 * 9 8 6 33 33 H 0.97000 * 119.99433 * 179.97438 * 13 12 10 34 34 H 1.09002 * 109.47391 * 149.99977 * 18 8 6 35 35 H 1.09001 * 109.46813 * 30.00033 * 18 8 6 36 36 H 1.08995 * 115.55630 * 29.32490 * 19 18 8 37 37 H 1.08998 * 117.50656 * 0.02562 * 20 19 18 38 38 H 1.09001 * 117.49674 * 145.02590 * 20 19 18 39 39 H 1.09003 * 117.49710 * 214.97494 * 21 19 18 40 40 H 1.08998 * 117.50185 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6335 0.6559 -0.0006 5 6 4.8543 1.5395 -0.0003 6 6 5.7393 1.1729 1.1631 7 8 5.4109 0.2822 1.9179 8 7 6.8959 1.8349 1.3647 9 6 7.7560 1.4789 2.4960 10 6 7.3691 2.2998 3.6991 11 1 6.5634 3.0155 3.6281 12 6 8.0437 2.1373 4.8905 13 7 9.0246 1.2655 4.9771 14 14 7.5645 3.1554 6.3816 15 1 6.5241 2.4353 7.1589 16 1 8.7589 3.3735 7.2367 17 1 7.0296 4.4666 5.9346 18 6 7.2930 2.9104 0.4527 19 6 8.1234 2.3273 -0.6924 20 6 9.5790 2.7831 -0.8126 21 6 8.5374 3.2761 -1.8191 22 7 3.6334 -0.6525 -0.0066 23 7 2.3026 -1.0900 -0.0005 24 1 2.0055 -2.0134 -0.0004 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3632 0.8900 0.5139 28 1 1.9741 2.1210 0.0004 29 1 4.5485 2.5817 0.0901 30 1 5.4031 1.4012 -0.9318 31 1 7.6357 0.4200 2.7248 32 1 8.7961 1.6792 2.2388 33 1 9.4994 1.1514 5.8153 34 1 7.8875 3.6457 0.9950 35 1 6.4022 3.3906 0.0477 36 1 7.8948 1.2961 -0.9614 37 1 9.9452 3.4980 -0.0758 38 1 10.3083 2.0516 -1.1607 39 1 8.5814 2.8688 -2.8292 40 1 8.2178 4.3155 -1.7448 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000151777967.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:49 Heat of formation + Delta-G solvation = 57.530494 kcal Electronic energy + Delta-G solvation = -21326.582533 eV Core-core repulsion = 18143.751652 eV Total energy + Delta-G solvation = -3182.830881 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.07241 -38.95039 -37.04803 -34.30439 -33.14110 -32.45093 -31.44580 -28.94107 -27.36465 -26.88617 -25.77438 -22.86476 -22.12797 -20.77090 -20.45233 -19.87281 -18.09579 -17.25655 -16.39924 -16.21356 -15.57629 -14.90391 -14.78539 -14.49290 -14.15798 -13.84972 -13.65702 -13.21769 -12.90352 -12.83955 -12.40509 -12.31569 -12.20848 -11.96532 -11.66372 -11.30357 -11.25765 -11.14561 -10.83613 -10.56792 -10.29895 -10.22603 -10.05908 -9.64449 -9.53537 -9.15306 -8.70895 -8.41703 -8.36420 -7.55629 -5.97317 -4.01484 2.05197 2.93388 3.03021 3.35104 3.41007 3.42909 3.57799 3.92024 4.16447 4.50764 4.66271 4.81936 4.98004 5.01466 5.14612 5.17012 5.29940 5.36670 5.43129 5.47794 5.64818 5.70251 5.72497 5.78729 5.81407 5.91912 5.97327 6.10935 6.13416 6.25421 6.32624 6.53832 6.79527 7.19820 7.45139 7.55811 7.66021 7.94312 8.00207 8.32337 8.53602 8.99073 9.23439 9.63321 11.10708 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.012396 B = 0.005508 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.192496 B = 5082.216495 C = 6745.193074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.075 3.925 3 C -0.266 4.266 4 C 0.097 3.903 5 C -0.063 4.063 6 C 0.509 3.491 7 O -0.524 6.524 8 N -0.596 5.596 9 C 0.249 3.751 10 C -0.524 4.524 11 H 0.057 0.943 12 C 0.061 3.939 13 N -0.895 5.895 14 Si 0.896 3.104 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.274 1.274 18 C 0.142 3.858 19 C -0.167 4.167 20 C -0.175 4.175 21 C -0.182 4.182 22 N -0.259 5.259 23 N -0.479 5.479 24 H 0.434 0.566 25 H 0.077 0.923 26 H 0.068 0.932 27 H 0.084 0.916 28 H 0.145 0.855 29 H 0.105 0.895 30 H 0.102 0.898 31 H 0.041 0.959 32 H 0.033 0.967 33 H 0.262 0.738 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.073 2.567 -15.199 18.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.053 4.053 3 C -0.295 4.295 4 C -0.071 4.071 5 C -0.105 4.105 6 C 0.294 3.706 7 O -0.400 6.400 8 N -0.328 5.328 9 C 0.130 3.870 10 C -0.563 4.563 11 H 0.075 0.925 12 C -0.141 4.141 13 N -0.534 5.534 14 Si 0.724 3.276 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.199 1.199 18 C 0.017 3.983 19 C -0.187 4.187 20 C -0.212 4.212 21 C -0.219 4.219 22 N -0.081 5.081 23 N -0.188 5.188 24 H 0.277 0.723 25 H 0.096 0.904 26 H 0.087 0.913 27 H 0.103 0.897 28 H 0.163 0.837 29 H 0.123 0.877 30 H 0.120 0.880 31 H 0.059 0.941 32 H 0.051 0.949 33 H 0.072 0.928 34 H 0.102 0.898 35 H 0.089 0.911 36 H 0.121 0.879 37 H 0.115 0.885 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.378 0.978 -14.636 17.969 hybrid contribution -0.754 0.798 0.917 1.431 sum -11.132 1.776 -13.719 17.756 Atomic orbital electron populations 1.20409 0.87588 1.03802 1.02992 1.21021 0.94359 0.87958 1.01998 1.21084 0.91560 0.99027 1.17845 1.21634 0.94610 0.91551 0.99262 1.20176 0.92053 0.98580 0.99720 1.20044 0.81918 0.82818 0.85851 1.90708 1.71909 1.30555 1.46830 1.48154 1.21328 1.34507 1.28840 1.19233 0.88541 0.97454 0.81802 1.21461 1.17471 1.21882 0.95437 0.92516 1.24926 0.95014 0.95536 0.98636 1.69942 1.22230 1.34780 1.26478 0.86532 0.77919 0.80434 0.82718 1.20662 1.21213 1.19932 1.21026 0.98075 0.90039 0.89129 1.22927 0.97805 0.99534 0.98395 1.22991 0.92258 1.03638 1.02274 1.22920 1.04809 0.99556 0.94646 1.77457 0.95101 1.12620 1.22959 1.46337 1.04372 1.07973 1.60096 0.72307 0.90446 0.91301 0.89717 0.83737 0.87677 0.87951 0.94058 0.94940 0.92836 0.89822 0.91141 0.87922 0.88463 0.89243 0.89236 0.88832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.68 10.43 36.01 0.38 -0.30 16 2 C 0.07 0.94 7.21 -82.26 -0.59 0.34 16 3 C -0.27 -3.79 10.64 -40.01 -0.43 -4.22 16 4 C 0.10 1.67 6.01 -82.40 -0.50 1.18 16 5 C -0.06 -1.02 4.83 -29.03 -0.14 -1.16 16 6 C 0.51 11.09 7.66 -10.99 -0.08 11.00 16 7 O -0.52 -14.11 15.15 5.56 0.08 -14.02 16 8 N -0.60 -12.84 2.46 -175.06 -0.43 -13.27 16 9 C 0.25 6.66 5.16 -5.19 -0.03 6.64 16 10 C -0.52 -15.12 9.39 -34.44 -0.32 -15.44 16 11 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 12 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 13 N -0.90 -27.15 13.29 55.43 0.74 -26.41 16 14 Si 0.90 22.26 29.54 -169.99 -5.02 17.24 16 15 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 16 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 17 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 18 C 0.14 2.31 5.49 -4.04 -0.02 2.29 16 19 C -0.17 -2.38 5.94 -90.62 -0.54 -2.92 16 20 C -0.17 -2.32 10.18 -26.73 -0.27 -2.59 16 21 C -0.18 -2.03 10.25 -26.73 -0.27 -2.31 16 22 N -0.26 -4.79 12.06 33.67 0.41 -4.38 16 23 N -0.48 -6.72 7.36 33.48 0.25 -6.48 16 24 H 0.43 4.57 8.96 -182.61 -1.64 2.93 16 25 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.14 1.68 8.06 -52.48 -0.42 1.26 16 29 H 0.11 1.38 7.38 -51.93 -0.38 1.00 16 30 H 0.10 1.41 8.03 -51.93 -0.42 1.00 16 31 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 32 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 33 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 34 H 0.08 1.42 7.81 -51.93 -0.41 1.02 16 35 H 0.07 0.94 6.44 -51.93 -0.33 0.60 16 36 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 37 H 0.10 1.33 8.03 -51.93 -0.42 0.91 16 38 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 39 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 343.13 15.07 5.17 5.17 Total: -1.00 -36.84 343.13 -9.05 -45.89 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -7.33 Total: 2.09 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: -2.92 Total: -5.82 kcal Atomic # 7 Polarization: -51.50 SS G_CDS: 0.96 Total: -50.54 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: 0.08 Total: -14.02 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -36.84 -9.05 -45.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151777967.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.420 kcal (2) G-P(sol) polarization free energy of solvation -36.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds