Wall clock time and date at job start Mon Mar 30 2020 01:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38224 * 120.41922 * 2 1 4 4 N 1.31857 * 120.76244 * 180.02562 * 3 2 1 5 5 C 1.31890 * 121.72510 * 359.70391 * 4 3 2 6 6 C 1.38182 * 120.76262 * 0.58291 * 5 4 3 7 7 C 1.50703 * 120.41430 * 179.70415 * 6 5 4 8 8 N 1.46499 * 109.47138 * 269.72302 * 7 6 5 9 9 C 1.34777 * 119.99665 * 180.28062 * 8 7 6 10 10 O 1.21583 * 120.00270 * 359.72083 * 9 8 7 11 11 N 1.34775 * 119.99585 * 179.72218 * 9 8 7 12 12 C 1.46507 * 119.99876 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.46968 * 180.02562 * 12 11 9 14 14 C 1.52994 * 109.46837 * 180.02562 * 13 12 11 15 15 C 1.50701 * 109.47362 * 179.97438 * 14 13 12 16 16 H 1.07999 * 119.99305 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00190 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99542 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 120.00085 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47180 * 90.00070 * 19 17 15 21 21 H 1.48503 * 109.46903 * 210.00050 * 19 17 15 22 22 H 1.48498 * 109.47152 * 329.99815 * 19 17 15 23 23 C 1.38627 * 120.41823 * 180.02562 * 2 1 3 24 24 H 1.09001 * 109.47132 * 269.98125 * 1 2 3 25 25 H 1.09003 * 109.46982 * 29.98030 * 1 2 3 26 26 H 1.08997 * 109.47584 * 149.98112 * 1 2 3 27 27 H 1.08000 * 119.62313 * 359.97438 * 3 2 1 28 28 H 1.07999 * 119.61452 * 180.30971 * 5 4 3 29 29 H 1.09009 * 109.46601 * 149.72204 * 7 6 5 30 30 H 1.08998 * 109.47035 * 29.72712 * 7 6 5 31 31 H 0.97001 * 119.99790 * 359.97438 * 8 7 6 32 32 H 0.97000 * 120.00523 * 0.02562 * 11 9 8 33 33 H 1.08998 * 109.47039 * 300.00042 * 12 11 9 34 34 H 1.08994 * 109.46660 * 60.00264 * 12 11 9 35 35 H 1.08998 * 109.46943 * 299.99694 * 13 12 11 36 36 H 1.08994 * 109.47116 * 60.00083 * 13 12 11 37 37 H 1.08996 * 109.47756 * 299.99976 * 14 13 12 38 38 H 1.09008 * 109.47349 * 59.99909 * 14 13 12 39 39 H 0.96999 * 119.99467 * 180.02562 * 18 17 15 40 40 H 1.07999 * 120.79175 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5254 1.1999 -0.0005 5 6 4.2257 0.0822 0.0048 6 6 3.5947 -1.1472 -0.0010 7 6 4.4027 -2.4193 -0.0016 8 7 4.6639 -2.8312 -1.3830 9 6 5.3693 -3.9528 -1.6298 10 8 5.7933 -4.6200 -0.7060 11 7 5.6049 -4.3348 -2.9006 12 6 6.3722 -5.5537 -3.1689 13 6 6.4947 -5.7568 -4.6804 14 6 7.2955 -7.0300 -4.9606 15 6 7.4157 -7.2305 -6.4493 16 1 6.9663 -6.5205 -7.1278 17 6 8.1004 -8.3197 -6.9452 18 7 8.2056 -8.4943 -8.2445 19 14 8.8783 -9.5473 -5.7717 20 1 7.9000 -10.6191 -5.4564 21 1 10.0804 -10.1453 -6.4063 22 1 9.2730 -8.8534 -4.5196 23 6 2.2089 -1.1955 -0.0005 24 1 -0.3633 -0.0003 1.0277 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3634 -0.8898 -0.5141 27 1 1.6675 2.1277 -0.0004 28 1 5.3046 0.1285 0.0092 29 1 3.8463 -3.2033 0.5123 30 1 5.3489 -2.2490 0.5119 31 1 4.3253 -2.2991 -2.1200 32 1 5.2670 -3.8023 -3.6377 33 1 7.3670 -5.4599 -2.7334 34 1 5.8613 -6.4091 -2.7272 35 1 5.5001 -5.8503 -5.1163 36 1 7.0058 -4.9012 -5.1217 37 1 8.2902 -6.9370 -4.5247 38 1 6.7840 -7.8855 -4.5193 39 1 8.6870 -9.2608 -8.5934 40 1 1.6888 -2.1420 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179298286.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:47 Heat of formation + Delta-G solvation = -15.669066 kcal Electronic energy + Delta-G solvation = -19863.936151 eV Core-core repulsion = 16677.931098 eV Total energy + Delta-G solvation = -3186.005052 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.83928 -39.76982 -36.00517 -35.07973 -34.05587 -33.35409 -32.34734 -31.22039 -27.83201 -27.58365 -26.16715 -23.59193 -22.81763 -21.57275 -20.95516 -20.30153 -18.26391 -17.42360 -17.11904 -16.86655 -16.26021 -15.61741 -14.90199 -14.81247 -14.40066 -14.37302 -14.07159 -13.84186 -13.52437 -13.46512 -13.15573 -13.13238 -12.84681 -12.69135 -12.00938 -11.92380 -11.82398 -11.06866 -10.89005 -10.42988 -10.15095 -9.99966 -9.88766 -9.82370 -9.68720 -9.33363 -9.30298 -9.22604 -8.70757 -8.55352 -6.06283 -4.04953 0.54781 0.79742 2.74739 3.27093 3.31677 3.38123 3.39310 3.43811 3.94656 4.22592 4.28276 4.34565 4.44687 4.50363 4.53568 4.70294 4.96473 5.08107 5.22283 5.27895 5.31887 5.42239 5.52557 5.55973 5.69031 5.74092 5.81434 6.03393 6.22659 6.29015 6.36895 6.46771 6.67834 6.81641 6.95265 7.23582 7.36917 7.52218 7.75846 8.04861 8.50176 8.64898 8.97532 9.56009 11.06940 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037558 B = 0.002362 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.331463 B =11850.207625 C =12070.554767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.140 4.140 3 C 0.103 3.897 4 N -0.482 5.482 5 C 0.112 3.888 6 C -0.153 4.153 7 C 0.186 3.814 8 N -0.748 5.748 9 C 0.701 3.299 10 O -0.593 6.593 11 N -0.741 5.741 12 C 0.133 3.867 13 C -0.113 4.113 14 C -0.011 4.011 15 C -0.522 4.522 16 H 0.072 0.928 17 C 0.066 3.934 18 N -0.903 5.903 19 Si 0.880 3.120 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.264 1.264 23 C -0.058 4.058 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.156 0.844 28 H 0.158 0.842 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.396 0.604 32 H 0.395 0.605 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.019 0.981 38 H 0.015 0.985 39 H 0.263 0.737 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.094 18.849 17.717 29.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.142 4.142 3 C -0.055 4.055 4 N -0.189 5.189 5 C -0.045 4.045 6 C -0.156 4.156 7 C 0.061 3.939 8 N -0.405 5.405 9 C 0.401 3.599 10 O -0.471 6.471 11 N -0.395 5.395 12 C 0.009 3.991 13 C -0.151 4.151 14 C -0.049 4.049 15 C -0.560 4.560 16 H 0.090 0.910 17 C -0.135 4.135 18 N -0.542 5.542 19 Si 0.707 3.293 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.189 1.189 23 C -0.084 4.084 24 H 0.093 0.907 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.173 0.827 28 H 0.175 0.825 29 H 0.094 0.906 30 H 0.097 0.903 31 H 0.229 0.771 32 H 0.229 0.771 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.037 0.963 38 H 0.033 0.967 39 H 0.073 0.927 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -14.144 18.881 18.441 29.944 hybrid contribution -0.344 -1.019 -0.264 1.107 sum -14.489 17.862 18.177 29.315 Atomic orbital electron populations 1.20742 0.89946 1.03390 1.02780 1.20983 0.97816 0.94036 1.01356 1.22770 0.89997 0.97606 0.95105 1.67758 1.08330 1.31081 1.11758 1.22780 1.00549 0.86953 0.94260 1.20948 0.94623 0.96465 1.03532 1.19873 0.98920 0.91941 0.83121 1.45140 1.59980 1.27282 1.08136 1.15978 0.79145 0.80869 0.83886 1.90924 1.56947 1.55782 1.43469 1.45336 1.59436 1.29244 1.05474 1.21527 0.95023 0.84554 0.97955 1.21706 1.01330 1.00799 0.91261 1.19503 0.95159 0.92377 0.97875 1.21096 1.34765 1.10022 0.90087 0.91032 1.25036 0.95758 0.97748 0.95000 1.69916 1.42722 1.29804 1.11775 0.86769 0.79145 0.81657 0.81697 1.20249 1.21382 1.18852 1.21501 0.93296 0.98543 0.95075 0.90748 0.91006 0.91110 0.82723 0.82488 0.90578 0.90348 0.77070 0.77127 0.91918 0.91944 0.92174 0.92117 0.96258 0.96711 0.92707 0.84533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.44 10.04 36.01 0.36 -0.07 16 2 C -0.14 -0.89 5.90 -104.48 -0.62 -1.51 16 3 C 0.10 0.75 10.86 -17.55 -0.19 0.56 16 4 N -0.48 -4.47 10.36 -13.25 -0.14 -4.61 16 5 C 0.11 0.93 10.86 -17.55 -0.19 0.74 16 6 C -0.15 -1.17 5.27 -104.48 -0.55 -1.72 16 7 C 0.19 1.66 5.83 -5.19 -0.03 1.63 16 8 N -0.75 -7.52 5.55 -66.41 -0.37 -7.89 16 9 C 0.70 10.05 8.57 -86.92 -0.74 9.30 16 10 O -0.59 -11.00 16.34 5.29 0.09 -10.91 16 11 N -0.74 -10.11 5.56 -65.22 -0.36 -10.47 16 12 C 0.13 2.20 5.67 -4.04 -0.02 2.18 16 13 C -0.11 -2.09 5.27 -26.73 -0.14 -2.23 16 14 C -0.01 -0.26 4.04 -27.89 -0.11 -0.37 16 15 C -0.52 -14.68 9.66 -34.44 -0.33 -15.02 16 16 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 17 C 0.07 1.91 5.47 -17.82 -0.10 1.82 16 18 N -0.90 -27.76 13.96 55.43 0.77 -26.99 16 19 Si 0.88 21.76 27.47 -169.99 -4.67 17.09 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 22 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 23 C -0.06 -0.40 9.55 -39.28 -0.37 -0.77 16 24 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 25 H 0.07 0.21 8.09 -51.93 -0.42 -0.21 16 26 H 0.07 0.25 8.10 -51.93 -0.42 -0.17 16 27 H 0.16 0.76 8.06 -52.49 -0.42 0.34 16 28 H 0.16 1.10 8.06 -52.49 -0.42 0.68 16 29 H 0.08 0.71 8.10 -51.92 -0.42 0.29 16 30 H 0.08 0.73 8.09 -51.93 -0.42 0.31 16 31 H 0.40 3.11 8.48 -40.82 -0.35 2.77 16 32 H 0.40 4.31 8.49 -40.82 -0.35 3.96 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 38 H 0.01 0.34 7.57 -51.92 -0.39 -0.05 16 39 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 40 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 LS Contribution 342.26 15.07 5.16 5.16 Total: -1.00 -34.50 342.26 -8.67 -43.17 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -6.11 Total: 0.92 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: -3.04 Total: -5.47 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: -0.10 Total: -49.95 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.09 Total: -10.91 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.50 -8.67 -43.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179298286.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.503 kcal (2) G-P(sol) polarization free energy of solvation -34.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds