Wall clock time and date at job start Mon Mar 30 2020 01:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38224 * 120.41922 * 2 1 4 4 N 1.31857 * 120.76244 * 180.02562 * 3 2 1 5 5 C 1.31890 * 121.72510 * 359.70391 * 4 3 2 6 6 C 1.38182 * 120.76262 * 0.58291 * 5 4 3 7 7 C 1.50703 * 120.41430 * 179.70415 * 6 5 4 8 8 N 1.46499 * 109.47138 * 269.72302 * 7 6 5 9 9 C 1.34777 * 119.99665 * 180.28062 * 8 7 6 10 10 O 1.21583 * 120.00270 * 359.72083 * 9 8 7 11 11 N 1.34775 * 119.99585 * 179.72218 * 9 8 7 12 12 C 1.46507 * 119.99876 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.46968 * 180.02562 * 12 11 9 14 14 C 1.52994 * 109.46837 * 180.02562 * 13 12 11 15 15 C 1.50701 * 109.47362 * 179.97438 * 14 13 12 16 16 H 1.07999 * 119.99305 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00190 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99542 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 120.00085 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47180 * 90.00070 * 19 17 15 21 21 H 1.48503 * 109.46903 * 210.00050 * 19 17 15 22 22 H 1.48498 * 109.47152 * 329.99815 * 19 17 15 23 23 C 1.38627 * 120.41823 * 180.02562 * 2 1 3 24 24 H 1.09001 * 109.47132 * 269.98125 * 1 2 3 25 25 H 1.09003 * 109.46982 * 29.98030 * 1 2 3 26 26 H 1.08997 * 109.47584 * 149.98112 * 1 2 3 27 27 H 1.08000 * 119.62313 * 359.97438 * 3 2 1 28 28 H 1.07999 * 119.61452 * 180.30971 * 5 4 3 29 29 H 1.09009 * 109.46601 * 149.72204 * 7 6 5 30 30 H 1.08998 * 109.47035 * 29.72712 * 7 6 5 31 31 H 0.97001 * 119.99790 * 359.97438 * 8 7 6 32 32 H 0.97000 * 120.00523 * 0.02562 * 11 9 8 33 33 H 1.08998 * 109.47039 * 300.00042 * 12 11 9 34 34 H 1.08994 * 109.46660 * 60.00264 * 12 11 9 35 35 H 1.08998 * 109.46943 * 299.99694 * 13 12 11 36 36 H 1.08994 * 109.47116 * 60.00083 * 13 12 11 37 37 H 1.08996 * 109.47756 * 299.99976 * 14 13 12 38 38 H 1.09008 * 109.47349 * 59.99909 * 14 13 12 39 39 H 0.96999 * 119.99467 * 180.02562 * 18 17 15 40 40 H 1.07999 * 120.79175 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5254 1.1999 -0.0005 5 6 4.2257 0.0822 0.0048 6 6 3.5947 -1.1472 -0.0010 7 6 4.4027 -2.4193 -0.0016 8 7 4.6639 -2.8312 -1.3830 9 6 5.3693 -3.9528 -1.6298 10 8 5.7933 -4.6200 -0.7060 11 7 5.6049 -4.3348 -2.9006 12 6 6.3722 -5.5537 -3.1689 13 6 6.4947 -5.7568 -4.6804 14 6 7.2955 -7.0300 -4.9606 15 6 7.4157 -7.2305 -6.4493 16 1 6.9663 -6.5205 -7.1278 17 6 8.1004 -8.3197 -6.9452 18 7 8.2056 -8.4943 -8.2445 19 14 8.8783 -9.5473 -5.7717 20 1 7.9000 -10.6191 -5.4564 21 1 10.0804 -10.1453 -6.4063 22 1 9.2730 -8.8534 -4.5196 23 6 2.2089 -1.1955 -0.0005 24 1 -0.3633 -0.0003 1.0277 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3634 -0.8898 -0.5141 27 1 1.6675 2.1277 -0.0004 28 1 5.3046 0.1285 0.0092 29 1 3.8463 -3.2033 0.5123 30 1 5.3489 -2.2490 0.5119 31 1 4.3253 -2.2991 -2.1200 32 1 5.2670 -3.8023 -3.6377 33 1 7.3670 -5.4599 -2.7334 34 1 5.8613 -6.4091 -2.7272 35 1 5.5001 -5.8503 -5.1163 36 1 7.0058 -4.9012 -5.1217 37 1 8.2902 -6.9370 -4.5247 38 1 6.7840 -7.8855 -4.5193 39 1 8.6870 -9.2608 -8.5934 40 1 1.6888 -2.1420 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179298286.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:47 Heat of formation + Delta-G solvation = -40.252888 kcal Electronic energy + Delta-G solvation = -19865.002185 eV Core-core repulsion = 16677.931098 eV Total energy + Delta-G solvation = -3187.071087 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.48446 -40.81057 -37.22243 -36.19767 -35.13599 -34.53831 -33.55840 -32.63254 -29.10939 -28.20460 -27.21178 -24.58495 -24.03559 -22.25398 -22.17959 -21.79789 -19.38923 -18.89563 -17.95795 -17.71092 -17.38663 -16.81062 -16.33088 -15.72732 -15.72108 -15.45357 -15.01388 -14.80262 -14.70863 -14.18493 -14.05988 -13.99691 -13.77554 -13.56202 -13.49837 -13.21513 -12.71874 -12.67743 -12.39167 -11.92847 -11.77570 -11.58015 -11.41072 -11.31246 -10.75191 -10.69458 -10.49734 -10.36813 -9.85475 -9.77792 -8.28569 -6.32316 -0.01899 0.25566 1.37947 1.39697 1.51621 1.76349 2.13847 2.37393 2.77631 3.07264 3.36206 3.41576 3.67794 3.79469 3.99137 4.00989 4.11790 4.23278 4.24642 4.43756 4.53031 4.64483 4.76212 4.83753 4.88007 4.92343 4.93402 5.05530 5.18764 5.24095 5.29801 5.38704 5.43547 5.53771 5.57943 5.66208 5.72533 5.97686 6.28475 6.75732 6.96109 7.07106 7.32481 7.55734 8.87804 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037558 B = 0.002362 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.331463 B =11850.207625 C =12070.554767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.137 4.137 3 C 0.093 3.907 4 N -0.509 5.509 5 C 0.100 3.900 6 C -0.151 4.151 7 C 0.190 3.810 8 N -0.730 5.730 9 C 0.700 3.300 10 O -0.636 6.636 11 N -0.733 5.733 12 C 0.147 3.853 13 C -0.099 4.099 14 C -0.013 4.013 15 C -0.530 4.530 16 H 0.037 0.963 17 C 0.003 3.997 18 N -0.951 5.951 19 Si 0.948 3.052 20 H -0.267 1.267 21 H -0.285 1.285 22 H -0.247 1.247 23 C -0.062 4.062 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.075 0.925 27 H 0.175 0.825 28 H 0.162 0.838 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.409 0.591 32 H 0.410 0.590 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.021 0.979 38 H 0.021 0.979 39 H 0.266 0.734 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.213 19.354 19.267 31.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.139 4.139 3 C -0.064 4.064 4 N -0.217 5.217 5 C -0.057 4.057 6 C -0.154 4.154 7 C 0.065 3.935 8 N -0.386 5.386 9 C 0.400 3.600 10 O -0.518 6.518 11 N -0.388 5.388 12 C 0.022 3.978 13 C -0.137 4.137 14 C -0.051 4.051 15 C -0.568 4.568 16 H 0.056 0.944 17 C -0.194 4.194 18 N -0.591 5.591 19 Si 0.771 3.229 20 H -0.192 1.192 21 H -0.211 1.211 22 H -0.171 1.171 23 C -0.088 4.088 24 H 0.101 0.899 25 H 0.101 0.899 26 H 0.094 0.906 27 H 0.192 0.808 28 H 0.180 0.820 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.245 0.755 32 H 0.246 0.754 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.039 0.961 38 H 0.039 0.961 39 H 0.075 0.925 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -15.303 19.447 19.981 31.806 hybrid contribution -0.088 -1.063 -0.791 1.328 sum -15.391 18.384 19.190 30.710 Atomic orbital electron populations 1.20799 0.88052 1.04255 1.03583 1.21244 0.99143 0.93413 1.00094 1.23187 0.89618 0.98963 0.94616 1.67760 1.09468 1.31614 1.12824 1.22899 1.00973 0.87102 0.94688 1.20752 0.94877 0.95453 1.04297 1.19870 0.98942 0.92460 0.82192 1.44990 1.58498 1.25878 1.09266 1.16086 0.79192 0.81418 0.83294 1.90898 1.58781 1.57395 1.44700 1.45060 1.59099 1.28610 1.06036 1.21149 0.95022 0.85604 0.96015 1.21470 1.00774 0.98646 0.92829 1.19471 0.96178 0.94949 0.94468 1.21468 1.33863 1.09104 0.92339 0.94444 1.26000 0.96575 1.00111 0.96682 1.70064 1.44199 1.30917 1.13969 0.85690 0.78269 0.79110 0.79801 1.19210 1.21103 1.17071 1.21730 0.93026 0.99470 0.94598 0.89860 0.89861 0.90571 0.80783 0.82036 0.90776 0.90822 0.75515 0.75363 0.92704 0.92544 0.91712 0.91796 0.96055 0.96114 0.92540 0.83219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.57 10.04 71.24 0.72 0.14 16 2 C -0.14 -1.46 5.90 -19.77 -0.12 -1.58 16 3 C 0.09 1.21 10.86 84.69 0.92 2.13 16 4 N -0.51 -8.96 10.36 -195.84 -2.03 -10.99 16 5 C 0.10 1.58 10.86 84.67 0.92 2.50 16 6 C -0.15 -2.12 5.27 -19.77 -0.10 -2.22 16 7 C 0.19 3.17 5.83 85.63 0.50 3.66 16 8 N -0.73 -13.48 5.55 -482.29 -2.68 -16.16 16 9 C 0.70 19.07 8.57 179.05 1.53 20.61 16 10 O -0.64 -23.08 16.34 -3.98 -0.06 -23.14 16 11 N -0.73 -18.71 5.56 -478.53 -2.66 -21.37 16 12 C 0.15 4.64 5.67 86.38 0.49 5.13 16 13 C -0.10 -3.55 5.27 30.59 0.16 -3.39 16 14 C -0.01 -0.57 4.04 29.85 0.12 -0.45 16 15 C -0.53 -30.03 9.66 25.60 0.25 -29.78 16 16 H 0.04 2.30 7.99 -2.91 -0.02 2.28 16 17 C 0.00 0.18 5.47 84.65 0.46 0.64 16 18 N -0.95 -59.44 13.96 21.45 0.30 -59.14 16 19 Si 0.95 44.39 27.47 68.60 1.88 46.28 16 20 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 21 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 22 H -0.25 -10.82 6.54 99.48 0.65 -10.17 16 23 C -0.06 -0.73 9.55 22.47 0.21 -0.52 16 24 H 0.08 0.32 8.14 -2.39 -0.02 0.31 16 25 H 0.08 0.26 8.09 -2.39 -0.02 0.24 16 26 H 0.08 0.34 8.10 -2.39 -0.02 0.32 16 27 H 0.18 1.38 8.06 -2.91 -0.02 1.36 16 28 H 0.16 2.21 8.06 -2.91 -0.02 2.18 16 29 H 0.07 1.30 8.10 -2.38 -0.02 1.28 16 30 H 0.07 1.33 8.09 -2.39 -0.02 1.31 16 31 H 0.41 5.57 8.48 -92.71 -0.79 4.78 16 32 H 0.41 8.03 8.49 -92.71 -0.79 7.24 16 33 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.06 1.87 8.14 -2.39 -0.02 1.86 16 35 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.02 0.96 7.20 -2.39 -0.02 0.94 16 38 H 0.02 0.92 7.57 -2.38 -0.02 0.90 16 39 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 40 H 0.15 1.33 8.06 -2.91 -0.02 1.31 16 Total: -1.00 -74.45 342.26 0.23 -74.22 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -0.58 Total: 13.41 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: 6.06 Total: -3.12 kcal Atomic # 7 Polarization: -100.59 SS G_CDS: -7.07 Total: -107.66 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -0.06 Total: -23.14 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.88 Total: 46.28 kcal Total: -74.45 0.23 -74.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179298286.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.970 kcal (2) G-P(sol) polarization free energy of solvation -74.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds