Wall clock time and date at job start Mon Mar 30 2020 02:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38298 * 126.31543 * 2 1 4 4 C 1.46959 * 126.43740 * 0.02562 * 3 2 1 5 5 C 1.35046 * 119.99506 * 179.43628 * 4 3 2 6 6 C 1.41830 * 119.99664 * 180.27734 * 5 4 3 7 7 O 1.21733 * 120.00657 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99774 * 179.97438 * 6 5 4 9 9 C 1.46499 * 120.00199 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.47555 * 180.02562 * 9 8 6 11 11 C 1.52995 * 109.47600 * 180.02562 * 10 9 8 12 12 C 1.50694 * 109.47591 * 180.02562 * 11 10 9 13 13 H 1.08008 * 119.99967 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00441 * 180.02562 * 12 11 10 15 15 N 1.31515 * 119.99704 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00226 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47280 * 89.99712 * 16 14 12 18 18 H 1.48502 * 109.46730 * 209.99940 * 16 14 12 19 19 H 1.48504 * 109.46876 * 329.99439 * 16 14 12 20 20 C 1.41434 * 107.11396 * 179.76402 * 3 2 1 21 21 N 1.30440 * 108.04045 * 0.23970 * 20 3 2 22 22 N 1.34397 * 126.32228 * 180.18411 * 2 1 3 23 23 C 1.46493 * 125.74073 * 359.97438 * 22 2 1 24 24 H 1.08998 * 109.47387 * 90.00244 * 1 2 3 25 25 H 1.08998 * 109.46778 * 209.99874 * 1 2 3 26 26 H 1.08996 * 109.47418 * 329.99570 * 1 2 3 27 27 H 1.08002 * 120.00611 * 359.72067 * 4 3 2 28 28 H 1.08001 * 120.00357 * 0.27830 * 5 4 3 29 29 H 0.97000 * 120.00323 * 0.02562 * 8 6 5 30 30 H 1.08999 * 109.47608 * 300.00432 * 9 8 6 31 31 H 1.09005 * 109.47021 * 60.00796 * 9 8 6 32 32 H 1.08998 * 109.47382 * 300.00439 * 10 9 8 33 33 H 1.09002 * 109.47216 * 60.00002 * 10 9 8 34 34 H 1.09006 * 109.46661 * 300.00146 * 11 10 9 35 35 H 1.09003 * 109.47604 * 59.99821 * 11 10 9 36 36 H 0.97000 * 119.99613 * 180.02562 * 15 14 12 37 37 H 1.08000 * 125.97638 * 180.25907 * 20 3 2 38 38 H 1.09005 * 109.47438 * 270.26592 * 23 22 2 39 39 H 1.08998 * 109.47668 * 30.26669 * 23 22 2 40 40 H 1.09002 * 109.47244 * 150.26911 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3260 1.1144 0.0000 4 6 1.8903 2.5179 0.0005 5 6 2.8071 3.5094 0.0120 6 6 2.3866 4.8639 0.0184 7 8 1.1993 5.1328 0.0141 8 7 3.3015 5.8535 0.0304 9 6 2.8672 7.2526 0.0365 10 6 4.0936 8.1673 0.0492 11 6 3.6401 9.6285 0.0562 12 6 4.8480 10.5294 0.0682 13 1 5.8401 10.1025 0.0710 14 6 4.6868 11.8987 0.0766 15 7 3.4788 12.4186 0.0738 16 14 6.1842 13.0154 0.0922 17 1 6.5885 13.3209 -1.3037 18 1 5.8523 14.2785 0.7991 19 1 7.3021 12.3346 0.7937 20 6 3.6617 0.6492 0.0056 21 7 3.6353 -0.6549 0.0035 22 7 2.3031 -1.0828 -0.0035 23 6 1.8519 -2.4766 -0.0074 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5139 27 1 0.8370 2.7564 -0.0036 28 1 3.8604 3.2710 0.0162 29 1 4.2475 5.6393 0.0342 30 1 2.2743 7.4530 -0.8559 31 1 2.2633 7.4417 0.9240 32 1 4.6869 7.9671 0.9414 33 1 4.6972 7.9781 -0.8385 34 1 3.0465 9.8289 -0.8358 35 1 3.0367 9.8175 0.9441 36 1 3.3654 13.3819 0.0794 37 1 4.5483 1.2659 0.0110 38 1 1.7358 -2.8239 1.0193 39 1 0.8954 -2.5475 -0.5252 40 1 2.5888 -3.0956 -0.5192 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179309847.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:15 Heat of formation + Delta-G solvation = 34.150408 kcal Electronic energy + Delta-G solvation = -19682.080782 eV Core-core repulsion = 16498.236064 eV Total energy + Delta-G solvation = -3183.844718 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.62237 -39.45677 -35.45273 -34.57589 -33.52571 -33.23294 -31.68325 -30.95757 -27.71399 -27.21400 -26.39536 -23.94109 -22.53721 -21.13365 -20.55906 -19.84536 -18.99548 -16.99112 -16.82701 -16.31154 -16.13706 -15.30623 -15.13809 -14.79294 -14.42751 -14.34512 -13.79781 -13.68367 -13.64055 -13.37908 -13.00290 -12.95888 -12.41217 -12.22922 -12.07264 -11.75560 -11.67241 -10.92372 -10.87775 -10.66737 -10.56084 -10.48450 -9.83057 -9.80464 -9.73910 -9.32453 -9.07323 -8.67356 -8.33750 -8.07541 -5.98449 -4.01257 0.77931 1.63753 2.01821 2.70637 3.33297 3.39437 3.42416 3.68127 3.72057 4.05655 4.13387 4.46773 4.48051 4.61475 4.73629 4.86306 4.89177 4.99471 5.07083 5.24980 5.36012 5.37222 5.42629 5.59452 5.80968 5.86864 6.16987 6.24689 6.31117 6.35585 6.53961 6.61743 6.67912 6.94538 7.07898 7.28013 7.67975 7.81266 7.89517 8.00886 8.41988 8.57950 9.05521 9.62640 11.12849 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.051206 B = 0.002175 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.679335 B =12870.033374 C =13380.328047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.113 3.887 3 C -0.233 4.233 4 C 0.032 3.968 5 C -0.235 4.235 6 C 0.545 3.455 7 O -0.560 6.560 8 N -0.724 5.724 9 C 0.117 3.883 10 C -0.121 4.121 11 C 0.023 3.977 12 C -0.521 4.521 13 H 0.055 0.945 14 C 0.056 3.944 15 N -0.894 5.894 16 Si 0.893 3.107 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.274 1.274 20 C 0.078 3.922 21 N -0.302 5.302 22 N -0.366 5.366 23 C 0.097 3.903 24 H 0.087 0.913 25 H 0.074 0.926 26 H 0.094 0.906 27 H 0.133 0.867 28 H 0.122 0.878 29 H 0.398 0.602 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.019 0.981 35 H 0.019 0.981 36 H 0.261 0.739 37 H 0.190 0.810 38 H 0.077 0.923 39 H 0.089 0.911 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.345 -30.616 -0.249 30.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.017 4.017 3 C -0.245 4.245 4 C 0.011 3.989 5 C -0.257 4.257 6 C 0.335 3.665 7 O -0.442 6.442 8 N -0.374 5.374 9 C -0.006 4.006 10 C -0.159 4.159 11 C -0.015 4.015 12 C -0.560 4.560 13 H 0.074 0.926 14 C -0.145 4.145 15 N -0.533 5.533 16 Si 0.721 3.279 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.109 4.109 21 N -0.121 5.121 22 N -0.146 5.146 23 C -0.045 4.045 24 H 0.106 0.894 25 H 0.093 0.907 26 H 0.112 0.888 27 H 0.151 0.849 28 H 0.140 0.860 29 H 0.232 0.768 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.070 0.930 37 H 0.207 0.793 38 H 0.096 0.904 39 H 0.107 0.893 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.598 -31.483 -0.246 31.818 hybrid contribution 0.944 1.308 0.011 1.613 sum -3.654 -30.176 -0.235 30.397 Atomic orbital electron populations 1.20577 0.86531 1.04568 1.04001 1.21709 0.94658 0.86977 0.98364 1.19215 0.92177 0.92933 1.20129 1.21559 0.99733 0.88522 0.89106 1.21742 1.00350 0.92729 1.10846 1.17119 0.86098 0.86135 0.77102 1.90796 1.16810 1.85333 1.51233 1.46135 1.09531 1.07193 1.74520 1.21602 0.98555 0.78598 1.01876 1.21882 0.95344 0.97843 1.00825 1.19034 0.96835 0.87943 0.97645 1.21218 0.92852 0.91126 1.50773 0.92649 1.25039 0.95799 0.98364 0.95346 1.69970 1.20940 1.11730 1.50658 0.86580 0.83076 0.80181 0.78062 1.20685 1.21232 1.19905 1.24140 0.97750 0.91622 0.97377 1.77169 0.95975 1.13593 1.25353 1.48300 1.04112 1.06241 1.55941 1.21926 1.01240 0.77597 1.03694 0.89441 0.90698 0.88763 0.84927 0.86023 0.76832 0.91869 0.91860 0.92769 0.92767 0.96284 0.96269 0.92967 0.79323 0.90412 0.89252 0.88916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.48 9.70 36.00 0.35 -0.13 16 2 C 0.11 0.94 7.02 -81.45 -0.57 0.37 16 3 C -0.23 -2.33 6.08 -105.13 -0.64 -2.97 16 4 C 0.03 0.35 9.33 -37.19 -0.35 0.01 16 5 C -0.23 -2.78 9.33 -39.34 -0.37 -3.14 16 6 C 0.55 8.56 7.57 -14.89 -0.11 8.45 16 7 O -0.56 -10.91 16.11 5.16 0.08 -10.82 16 8 N -0.72 -10.99 5.55 -63.17 -0.35 -11.34 16 9 C 0.12 2.15 5.67 -4.04 -0.02 2.12 16 10 C -0.12 -2.43 5.27 -26.73 -0.14 -2.57 16 11 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 12 C -0.52 -14.76 9.11 -34.44 -0.31 -15.08 16 13 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.89 -27.10 13.29 55.43 0.74 -26.37 16 16 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 20 C 0.08 0.77 11.39 -16.93 -0.19 0.57 16 21 N -0.30 -3.22 12.49 30.89 0.39 -2.84 16 22 N -0.37 -3.08 3.98 -63.24 -0.25 -3.33 16 23 C 0.10 0.38 11.06 59.84 0.66 1.04 16 24 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.07 0.21 7.72 -51.93 -0.40 -0.19 16 26 H 0.09 0.47 7.61 -51.93 -0.40 0.07 16 27 H 0.13 1.49 7.02 -52.49 -0.37 1.12 16 28 H 0.12 1.10 6.93 -52.49 -0.36 0.73 16 29 H 0.40 4.86 8.43 -40.82 -0.34 4.51 16 30 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 37 H 0.19 1.37 7.31 -52.49 -0.38 0.99 16 38 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 39 H 0.09 0.14 7.64 -51.93 -0.40 -0.26 16 40 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 346.23 15.07 5.22 5.22 Total: -1.00 -36.09 346.23 -7.13 -43.22 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -6.00 Total: -1.07 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: -1.93 Total: -9.36 kcal Atomic # 7 Polarization: -44.39 SS G_CDS: 0.52 Total: -43.87 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.08 Total: -10.82 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -36.09 -7.13 -43.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179309847.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.369 kcal (2) G-P(sol) polarization free energy of solvation -36.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds