Wall clock time and date at job start Mon Mar 30 2020 02:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38298 * 126.31543 * 2 1 4 4 C 1.46959 * 126.43740 * 0.02562 * 3 2 1 5 5 C 1.35046 * 119.99506 * 179.43628 * 4 3 2 6 6 C 1.41830 * 119.99664 * 180.27734 * 5 4 3 7 7 O 1.21733 * 120.00657 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99774 * 179.97438 * 6 5 4 9 9 C 1.46499 * 120.00199 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.47555 * 180.02562 * 9 8 6 11 11 C 1.52995 * 109.47600 * 180.02562 * 10 9 8 12 12 C 1.50694 * 109.47591 * 180.02562 * 11 10 9 13 13 H 1.08008 * 119.99967 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00441 * 180.02562 * 12 11 10 15 15 N 1.31515 * 119.99704 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00226 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47280 * 89.99712 * 16 14 12 18 18 H 1.48502 * 109.46730 * 209.99940 * 16 14 12 19 19 H 1.48504 * 109.46876 * 329.99439 * 16 14 12 20 20 C 1.41434 * 107.11396 * 179.76402 * 3 2 1 21 21 N 1.30440 * 108.04045 * 0.23970 * 20 3 2 22 22 N 1.34397 * 126.32228 * 180.18411 * 2 1 3 23 23 C 1.46493 * 125.74073 * 359.97438 * 22 2 1 24 24 H 1.08998 * 109.47387 * 90.00244 * 1 2 3 25 25 H 1.08998 * 109.46778 * 209.99874 * 1 2 3 26 26 H 1.08996 * 109.47418 * 329.99570 * 1 2 3 27 27 H 1.08002 * 120.00611 * 359.72067 * 4 3 2 28 28 H 1.08001 * 120.00357 * 0.27830 * 5 4 3 29 29 H 0.97000 * 120.00323 * 0.02562 * 8 6 5 30 30 H 1.08999 * 109.47608 * 300.00432 * 9 8 6 31 31 H 1.09005 * 109.47021 * 60.00796 * 9 8 6 32 32 H 1.08998 * 109.47382 * 300.00439 * 10 9 8 33 33 H 1.09002 * 109.47216 * 60.00002 * 10 9 8 34 34 H 1.09006 * 109.46661 * 300.00146 * 11 10 9 35 35 H 1.09003 * 109.47604 * 59.99821 * 11 10 9 36 36 H 0.97000 * 119.99613 * 180.02562 * 15 14 12 37 37 H 1.08000 * 125.97638 * 180.25907 * 20 3 2 38 38 H 1.09005 * 109.47438 * 270.26592 * 23 22 2 39 39 H 1.08998 * 109.47668 * 30.26669 * 23 22 2 40 40 H 1.09002 * 109.47244 * 150.26911 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3260 1.1144 0.0000 4 6 1.8903 2.5179 0.0005 5 6 2.8071 3.5094 0.0120 6 6 2.3866 4.8639 0.0184 7 8 1.1993 5.1328 0.0141 8 7 3.3015 5.8535 0.0304 9 6 2.8672 7.2526 0.0365 10 6 4.0936 8.1673 0.0492 11 6 3.6401 9.6285 0.0562 12 6 4.8480 10.5294 0.0682 13 1 5.8401 10.1025 0.0710 14 6 4.6868 11.8987 0.0766 15 7 3.4788 12.4186 0.0738 16 14 6.1842 13.0154 0.0922 17 1 6.5885 13.3209 -1.3037 18 1 5.8523 14.2785 0.7991 19 1 7.3021 12.3346 0.7937 20 6 3.6617 0.6492 0.0056 21 7 3.6353 -0.6549 0.0035 22 7 2.3031 -1.0828 -0.0035 23 6 1.8519 -2.4766 -0.0074 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5139 27 1 0.8370 2.7564 -0.0036 28 1 3.8604 3.2710 0.0162 29 1 4.2475 5.6393 0.0342 30 1 2.2743 7.4530 -0.8559 31 1 2.2633 7.4417 0.9240 32 1 4.6869 7.9671 0.9414 33 1 4.6972 7.9781 -0.8385 34 1 3.0465 9.8289 -0.8358 35 1 3.0367 9.8175 0.9441 36 1 3.3654 13.3819 0.0794 37 1 4.5483 1.2659 0.0110 38 1 1.7358 -2.8239 1.0193 39 1 0.8954 -2.5475 -0.5252 40 1 2.5888 -3.0956 -0.5192 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179309847.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:14 Heat of formation + Delta-G solvation = 9.505272 kcal Electronic energy + Delta-G solvation = -19683.149475 eV Core-core repulsion = 16498.236064 eV Total energy + Delta-G solvation = -3184.913411 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.27211 -40.72076 -36.99607 -35.39227 -35.13348 -34.17466 -33.07492 -32.05053 -28.99136 -27.82981 -27.51316 -25.38053 -23.84512 -22.27517 -22.00798 -20.63638 -20.01197 -18.51800 -18.03212 -17.46023 -16.69631 -16.67409 -16.59431 -16.35269 -15.46059 -15.27912 -15.20208 -14.55073 -14.24485 -14.12738 -14.05460 -13.72730 -13.52188 -13.43229 -13.31353 -12.92505 -12.85787 -12.73839 -12.52809 -12.35105 -11.65542 -11.62511 -11.56921 -11.32167 -11.22833 -10.86983 -10.54236 -10.34817 -10.03514 -8.85917 -8.18256 -6.29755 -0.05472 0.93281 1.42370 1.44060 1.51778 1.55060 1.86355 2.39219 2.49088 2.65170 3.15180 3.50128 3.63651 4.00037 4.05111 4.15306 4.24918 4.28506 4.35598 4.38996 4.54719 4.58273 4.64099 4.69447 4.70775 4.94040 4.97349 5.02980 5.04253 5.18744 5.39796 5.48017 5.51888 5.55766 5.61071 5.72525 5.85550 5.97972 6.23838 6.61362 6.72174 6.87806 7.37755 7.39787 8.93879 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.051206 B = 0.002175 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.679335 B =12870.033374 C =13380.328047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.124 3.876 3 C -0.265 4.265 4 C 0.056 3.944 5 C -0.254 4.254 6 C 0.544 3.456 7 O -0.607 6.607 8 N -0.715 5.715 9 C 0.130 3.870 10 C -0.102 4.102 11 C 0.023 3.977 12 C -0.541 4.541 13 H 0.066 0.934 14 C -0.005 4.005 15 N -0.935 5.935 16 Si 0.969 3.031 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.260 1.260 20 C 0.075 3.925 21 N -0.335 5.335 22 N -0.367 5.367 23 C 0.085 3.915 24 H 0.101 0.899 25 H 0.100 0.900 26 H 0.091 0.909 27 H 0.126 0.874 28 H 0.151 0.849 29 H 0.415 0.585 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.067 0.933 33 H 0.067 0.933 34 H -0.008 1.008 35 H -0.008 1.008 36 H 0.263 0.737 37 H 0.207 0.793 38 H 0.091 0.909 39 H 0.117 0.883 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.168 -32.683 -0.271 32.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.008 4.008 3 C -0.276 4.276 4 C 0.035 3.965 5 C -0.276 4.276 6 C 0.337 3.663 7 O -0.492 6.492 8 N -0.366 5.366 9 C 0.006 3.994 10 C -0.139 4.139 11 C -0.015 4.015 12 C -0.579 4.579 13 H 0.085 0.915 14 C -0.203 4.203 15 N -0.575 5.575 16 Si 0.793 3.207 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.184 1.184 20 C -0.111 4.111 21 N -0.154 5.154 22 N -0.146 5.146 23 C -0.055 4.055 24 H 0.120 0.880 25 H 0.119 0.881 26 H 0.110 0.890 27 H 0.144 0.856 28 H 0.169 0.831 29 H 0.252 0.748 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.010 0.990 35 H 0.010 0.990 36 H 0.072 0.928 37 H 0.224 0.776 38 H 0.109 0.891 39 H 0.135 0.865 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.373 -33.603 -0.268 33.773 hybrid contribution 0.461 1.774 0.016 1.833 sum -2.911 -31.829 -0.252 31.963 Atomic orbital electron populations 1.20747 0.84080 1.05762 1.05212 1.22246 0.96118 0.86570 0.95862 1.19264 0.92877 0.92741 1.22715 1.21593 0.99307 0.89149 0.86490 1.21625 1.02022 0.90404 1.13532 1.17680 0.85330 0.87438 0.75836 1.90770 1.18733 1.86080 1.53623 1.45907 1.10597 1.05619 1.74466 1.21187 0.97398 0.80382 1.00450 1.21593 0.95970 0.94306 1.02069 1.18955 0.95782 0.91723 0.95051 1.21687 0.93848 0.91923 1.50422 0.91536 1.26052 0.99103 1.00307 0.94812 1.70119 1.23499 1.12206 1.51692 0.85391 0.79116 0.77737 0.78444 1.19809 1.20998 1.18443 1.24492 0.98417 0.91689 0.96542 1.77118 0.97653 1.14035 1.26624 1.48689 1.03450 1.07721 1.54750 1.22322 1.02585 0.75455 1.05108 0.88045 0.88115 0.89007 0.85619 0.83129 0.74801 0.93439 0.93438 0.91416 0.91388 0.98978 0.98963 0.92825 0.77636 0.89051 0.86454 0.88643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.70 9.70 71.24 0.69 -0.01 16 2 C 0.12 1.82 7.02 42.18 0.30 2.11 16 3 C -0.26 -4.94 6.08 -20.19 -0.12 -5.06 16 4 C 0.06 1.19 9.33 23.82 0.22 1.42 16 5 C -0.25 -5.78 9.33 22.42 0.21 -5.57 16 6 C 0.54 17.06 7.57 85.13 0.64 17.71 16 7 O -0.61 -24.26 16.11 -4.45 -0.07 -24.33 16 8 N -0.72 -21.34 5.55 -471.96 -2.62 -23.96 16 9 C 0.13 4.88 5.67 86.38 0.49 5.37 16 10 C -0.10 -4.06 5.27 30.59 0.16 -3.90 16 11 C 0.02 1.21 4.97 29.84 0.15 1.35 16 12 C -0.54 -30.73 9.11 25.60 0.23 -30.49 16 13 H 0.07 3.55 7.74 -2.91 -0.02 3.52 16 14 C -0.01 -0.30 5.46 84.65 0.46 0.16 16 15 N -0.93 -57.86 13.29 21.45 0.28 -57.57 16 16 Si 0.97 44.38 29.54 68.60 2.03 46.41 16 17 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 18 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 19 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 20 C 0.07 1.37 11.39 85.69 0.98 2.35 16 21 N -0.33 -6.70 12.49 -56.18 -0.70 -7.41 16 22 N -0.37 -5.41 3.98 -354.01 -1.41 -6.82 16 23 C 0.08 0.44 11.06 127.77 1.41 1.85 16 24 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 25 H 0.10 0.20 7.72 -2.39 -0.02 0.19 16 26 H 0.09 0.74 7.61 -2.39 -0.02 0.73 16 27 H 0.13 2.81 7.02 -2.91 -0.02 2.79 16 28 H 0.15 2.43 6.93 -2.91 -0.02 2.41 16 29 H 0.42 9.44 8.43 -92.71 -0.78 8.66 16 30 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 32 H 0.07 2.53 8.14 -2.39 -0.02 2.52 16 33 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 34 H -0.01 -0.48 8.14 -2.38 -0.02 -0.49 16 35 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 36 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 37 H 0.21 2.67 7.31 -2.91 -0.02 2.65 16 38 H 0.09 0.25 8.14 -2.38 -0.02 0.23 16 39 H 0.12 -0.06 7.64 -2.39 -0.02 -0.08 16 40 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 Total: -1.00 -79.63 346.23 3.59 -76.04 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: 0.25 Total: 10.35 kcal Atomic # 6 Polarization: -18.55 SS G_CDS: 5.82 Total: -12.72 kcal Atomic # 7 Polarization: -91.31 SS G_CDS: -4.44 Total: -95.75 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: -0.07 Total: -24.33 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -79.63 3.59 -76.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179309847.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.548 kcal (2) G-P(sol) polarization free energy of solvation -79.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds