Wall clock time and date at job start Mon Mar 30 2020 01:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38852 * 120.74919 * 2 1 4 4 C 1.38061 * 119.31199 * 180.02562 * 3 2 1 5 5 C 1.50708 * 119.57425 * 180.02562 * 4 3 2 6 6 N 1.31944 * 120.85050 * 359.72681 * 4 3 2 7 7 C 1.32350 * 121.62919 * 0.56520 * 6 4 3 8 8 N 1.39395 * 119.69536 * 179.70777 * 7 6 4 9 9 C 1.34778 * 119.99729 * 4.98081 * 8 7 6 10 10 O 1.21581 * 120.00285 * 354.75802 * 9 8 7 11 11 N 1.34774 * 119.99854 * 175.03955 * 9 8 7 12 12 C 1.46509 * 120.00047 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.47172 * 179.97438 * 12 11 9 14 14 C 1.53000 * 109.47009 * 179.97438 * 13 12 11 15 15 C 1.50705 * 109.47101 * 179.97438 * 14 13 12 16 16 H 1.07999 * 119.99942 * 0.02562 * 15 14 13 17 17 C 1.37874 * 119.99989 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00087 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99855 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47273 * 90.00085 * 19 17 15 21 21 H 1.48504 * 109.46690 * 210.00022 * 19 17 15 22 22 H 1.48500 * 109.47015 * 329.99880 * 19 17 15 23 23 C 1.38340 * 120.75587 * 180.02562 * 2 1 3 24 24 H 1.09000 * 109.46969 * 269.96944 * 1 2 3 25 25 H 1.09001 * 109.47613 * 29.97300 * 1 2 3 26 26 H 1.09004 * 109.46916 * 149.97799 * 1 2 3 27 27 H 1.07997 * 120.34109 * 0.02562 * 3 2 1 28 28 H 1.09004 * 109.46629 * 89.99778 * 5 4 3 29 29 H 1.08996 * 109.46648 * 209.99890 * 5 4 3 30 30 H 1.08998 * 109.46825 * 330.00449 * 5 4 3 31 31 H 0.96993 * 120.00222 * 184.97530 * 8 7 6 32 32 H 0.96997 * 120.00354 * 359.97438 * 11 9 8 33 33 H 1.09000 * 109.46715 * 299.99527 * 12 11 9 34 34 H 1.08994 * 109.46992 * 59.99217 * 12 11 9 35 35 H 1.09003 * 109.46759 * 299.99917 * 13 12 11 36 36 H 1.09005 * 109.47301 * 59.99590 * 13 12 11 37 37 H 1.08991 * 109.47286 * 300.00089 * 14 13 12 38 38 H 1.08998 * 109.46670 * 60.00352 * 14 13 12 39 39 H 0.96999 * 120.00259 * 179.97438 * 18 17 15 40 40 H 1.08003 * 120.45381 * 359.94384 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1933 0.0000 4 6 3.5971 1.1587 -0.0005 5 6 4.3735 2.4503 0.0000 6 7 4.2451 0.0093 0.0044 7 6 3.6043 -1.1487 -0.0012 8 7 4.3295 -2.3392 -0.0019 9 6 5.6728 -2.3100 0.1044 10 8 6.2596 -1.2451 0.1049 11 7 6.3660 -3.4614 0.2045 12 6 7.8261 -3.4297 0.3206 13 6 8.3611 -4.8597 0.4193 14 6 9.8860 -4.8265 0.5399 15 6 10.4129 -6.2351 0.6378 16 1 9.7286 -7.0703 0.6157 17 6 11.7686 -6.4574 0.7545 18 7 12.6019 -5.4403 0.7808 19 14 12.4217 -8.2034 0.8750 20 1 12.7058 -8.7208 -0.4875 21 1 13.6712 -8.2100 1.6776 22 1 11.4074 -9.0671 1.5310 23 6 2.2144 -1.1888 -0.0005 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3634 0.8902 -0.5134 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6948 2.1387 0.0004 28 1 4.5610 2.7610 1.0279 29 1 5.3233 2.3035 -0.5142 30 1 3.7977 3.2206 -0.5130 31 1 3.8675 -3.1885 -0.0787 32 1 5.8982 -4.3111 0.2004 33 1 8.2499 -2.9427 -0.5577 34 1 8.1075 -2.8742 1.2152 35 1 7.9372 -5.3463 1.2978 36 1 8.0797 -5.4155 -0.4752 37 1 10.3094 -4.3400 -0.3387 38 1 10.1676 -4.2707 1.4342 39 1 13.5556 -5.5967 0.8633 40 1 1.6943 -2.1354 0.0000 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184233361.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:53 Heat of formation + Delta-G solvation = -4.247053 kcal Electronic energy + Delta-G solvation = -20214.657416 eV Core-core repulsion = 17029.147660 eV Total energy + Delta-G solvation = -3185.509757 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.93209 -39.40090 -35.80452 -34.83505 -34.27547 -33.30812 -31.71963 -30.70711 -28.23091 -27.51270 -26.60144 -23.70033 -22.47257 -21.84636 -20.69374 -20.12361 -18.29144 -17.43121 -16.35352 -16.18135 -16.01275 -15.72838 -14.87746 -14.79045 -14.41108 -14.01595 -13.89298 -13.78767 -13.56010 -12.99506 -12.76846 -12.61286 -12.32827 -12.27634 -11.87704 -11.80468 -11.71617 -10.91027 -10.72200 -10.59133 -10.55084 -10.27442 -9.84960 -9.56613 -9.49577 -9.14069 -9.05280 -8.77605 -8.36467 -8.25597 -6.00948 -4.04112 0.99834 1.18296 2.49947 3.26301 3.31231 3.37558 3.40267 3.82165 3.98721 4.35418 4.42619 4.45695 4.77930 4.89356 4.95495 5.17307 5.19156 5.34752 5.36733 5.42324 5.53361 5.57468 5.64581 5.80539 5.81683 5.95669 6.09358 6.18423 6.23370 6.48452 6.62460 6.62952 6.80545 6.93575 7.02204 7.64750 7.77587 7.82706 7.97935 8.22009 8.38619 8.73302 9.02570 9.59955 11.10342 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.043664 B = 0.002517 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.104589 B =11121.446787 C =11719.603700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.014 4.014 3 C -0.215 4.215 4 C 0.165 3.835 5 C -0.104 4.104 6 N -0.476 5.476 7 C 0.393 3.607 8 N -0.673 5.673 9 C 0.688 3.312 10 O -0.528 6.528 11 N -0.739 5.739 12 C 0.135 3.865 13 C -0.120 4.120 14 C 0.024 3.976 15 C -0.522 4.522 16 H 0.055 0.945 17 C 0.056 3.944 18 N -0.893 5.893 19 Si 0.893 3.107 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.224 4.224 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.131 0.869 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.411 0.589 32 H 0.393 0.607 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.020 0.980 38 H 0.020 0.980 39 H 0.261 0.739 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.941 10.821 -1.872 28.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.022 4.022 3 C -0.237 4.237 4 C 0.026 3.974 5 C -0.161 4.161 6 N -0.192 5.192 7 C 0.160 3.840 8 N -0.321 5.321 9 C 0.387 3.613 10 O -0.399 6.399 11 N -0.394 5.394 12 C 0.012 3.988 13 C -0.158 4.158 14 C -0.014 4.014 15 C -0.560 4.560 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.532 5.532 19 Si 0.721 3.279 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.248 4.248 24 H 0.095 0.905 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.149 0.851 28 H 0.097 0.903 29 H 0.100 0.900 30 H 0.092 0.908 31 H 0.247 0.753 32 H 0.226 0.774 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.038 0.962 38 H 0.038 0.962 39 H 0.071 0.929 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -24.143 11.782 -1.827 26.926 hybrid contribution -0.885 -1.971 0.045 2.161 sum -25.028 9.811 -1.782 26.941 Atomic orbital electron populations 1.20803 0.90171 1.03240 1.02845 1.20001 0.96385 0.92222 0.93549 1.21698 0.94707 0.98514 1.08770 1.21196 0.90810 0.93461 0.91909 1.20724 1.00630 0.91565 1.03193 1.67548 1.39309 0.96423 1.15909 1.18128 0.87223 0.85984 0.92652 1.42817 1.06554 1.07190 1.75587 1.16116 0.80744 0.85368 0.79094 1.91047 1.67241 1.28285 1.53309 1.45454 1.08892 1.06480 1.78585 1.21552 0.75644 0.99679 1.01886 1.21894 1.00655 0.92444 1.00806 1.19030 0.87336 0.97367 0.97667 1.21198 0.91946 0.92431 1.50475 0.92662 1.25034 0.97165 0.96975 0.95336 1.69965 1.02869 1.30113 1.50285 0.86579 0.78420 0.84867 0.78026 1.20667 1.21209 1.19918 1.21214 0.92272 0.99444 1.11874 0.90512 0.90980 0.91083 0.85070 0.90318 0.90049 0.90823 0.75264 0.77357 0.91772 0.91800 0.92737 0.92738 0.96207 0.96208 0.92917 0.84930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.61 10.06 36.00 0.36 -0.25 16 2 C -0.01 -0.12 5.91 -104.36 -0.62 -0.74 16 3 C -0.22 -2.08 9.44 -39.42 -0.37 -2.45 16 4 C 0.17 2.05 6.78 -82.60 -0.56 1.49 16 5 C -0.10 -1.03 10.17 36.01 0.37 -0.66 16 6 N -0.48 -7.48 7.80 -8.60 -0.07 -7.55 16 7 C 0.39 5.25 7.42 -154.71 -1.15 4.11 16 8 N -0.67 -8.31 5.39 -15.81 -0.09 -8.40 16 9 C 0.69 11.21 8.52 -86.92 -0.74 10.47 16 10 O -0.53 -11.01 14.61 5.29 0.08 -10.94 16 11 N -0.74 -10.90 5.56 -65.23 -0.36 -11.26 16 12 C 0.14 2.44 5.67 -4.04 -0.02 2.42 16 13 C -0.12 -2.35 5.27 -26.73 -0.14 -2.49 16 14 C 0.02 0.60 4.97 -27.88 -0.14 0.47 16 15 C -0.52 -14.63 9.11 -34.44 -0.31 -14.94 16 16 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -26.96 13.29 55.43 0.74 -26.23 16 19 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 23 C -0.22 -2.20 9.64 -39.24 -0.38 -2.58 16 24 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.07 0.32 8.10 -51.93 -0.42 -0.10 16 26 H 0.07 0.32 8.10 -51.93 -0.42 -0.11 16 27 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 28 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 31 H 0.41 3.28 8.72 -40.82 -0.36 2.92 16 32 H 0.39 4.45 8.49 -40.82 -0.35 4.11 16 33 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 40 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 LS Contribution 342.86 15.07 5.17 5.17 Total: -1.00 -35.74 342.86 -9.51 -45.25 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -6.16 Total: 1.05 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: -3.80 Total: -3.64 kcal Atomic # 7 Polarization: -53.66 SS G_CDS: 0.22 Total: -53.43 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.08 Total: -10.94 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -35.74 -9.51 -45.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184233361.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.006 kcal (2) G-P(sol) polarization free energy of solvation -35.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds