Wall clock time and date at job start Mon Mar 30 2020 01:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38852 * 120.74919 * 2 1 4 4 C 1.38061 * 119.31199 * 180.02562 * 3 2 1 5 5 C 1.50708 * 119.57425 * 180.02562 * 4 3 2 6 6 N 1.31944 * 120.85050 * 359.72681 * 4 3 2 7 7 C 1.32350 * 121.62919 * 0.56520 * 6 4 3 8 8 N 1.39395 * 119.69536 * 179.70777 * 7 6 4 9 9 C 1.34778 * 119.99729 * 4.98081 * 8 7 6 10 10 O 1.21581 * 120.00285 * 354.75802 * 9 8 7 11 11 N 1.34774 * 119.99854 * 175.03955 * 9 8 7 12 12 C 1.46509 * 120.00047 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.47172 * 179.97438 * 12 11 9 14 14 C 1.53000 * 109.47009 * 179.97438 * 13 12 11 15 15 C 1.50705 * 109.47101 * 179.97438 * 14 13 12 16 16 H 1.07999 * 119.99942 * 0.02562 * 15 14 13 17 17 C 1.37874 * 119.99989 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00087 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99855 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47273 * 90.00085 * 19 17 15 21 21 H 1.48504 * 109.46690 * 210.00022 * 19 17 15 22 22 H 1.48500 * 109.47015 * 329.99880 * 19 17 15 23 23 C 1.38340 * 120.75587 * 180.02562 * 2 1 3 24 24 H 1.09000 * 109.46969 * 269.96944 * 1 2 3 25 25 H 1.09001 * 109.47613 * 29.97300 * 1 2 3 26 26 H 1.09004 * 109.46916 * 149.97799 * 1 2 3 27 27 H 1.07997 * 120.34109 * 0.02562 * 3 2 1 28 28 H 1.09004 * 109.46629 * 89.99778 * 5 4 3 29 29 H 1.08996 * 109.46648 * 209.99890 * 5 4 3 30 30 H 1.08998 * 109.46825 * 330.00449 * 5 4 3 31 31 H 0.96993 * 120.00222 * 184.97530 * 8 7 6 32 32 H 0.96997 * 120.00354 * 359.97438 * 11 9 8 33 33 H 1.09000 * 109.46715 * 299.99527 * 12 11 9 34 34 H 1.08994 * 109.46992 * 59.99217 * 12 11 9 35 35 H 1.09003 * 109.46759 * 299.99917 * 13 12 11 36 36 H 1.09005 * 109.47301 * 59.99590 * 13 12 11 37 37 H 1.08991 * 109.47286 * 300.00089 * 14 13 12 38 38 H 1.08998 * 109.46670 * 60.00352 * 14 13 12 39 39 H 0.96999 * 120.00259 * 179.97438 * 18 17 15 40 40 H 1.08003 * 120.45381 * 359.94384 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1933 0.0000 4 6 3.5971 1.1587 -0.0005 5 6 4.3735 2.4503 0.0000 6 7 4.2451 0.0093 0.0044 7 6 3.6043 -1.1487 -0.0012 8 7 4.3295 -2.3392 -0.0019 9 6 5.6728 -2.3100 0.1044 10 8 6.2596 -1.2451 0.1049 11 7 6.3660 -3.4614 0.2045 12 6 7.8261 -3.4297 0.3206 13 6 8.3611 -4.8597 0.4193 14 6 9.8860 -4.8265 0.5399 15 6 10.4129 -6.2351 0.6378 16 1 9.7286 -7.0703 0.6157 17 6 11.7686 -6.4574 0.7545 18 7 12.6019 -5.4403 0.7808 19 14 12.4217 -8.2034 0.8750 20 1 12.7058 -8.7208 -0.4875 21 1 13.6712 -8.2100 1.6776 22 1 11.4074 -9.0671 1.5310 23 6 2.2144 -1.1888 -0.0005 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3634 0.8902 -0.5134 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6948 2.1387 0.0004 28 1 4.5610 2.7610 1.0279 29 1 5.3233 2.3035 -0.5142 30 1 3.7977 3.2206 -0.5130 31 1 3.8675 -3.1885 -0.0787 32 1 5.8982 -4.3111 0.2004 33 1 8.2499 -2.9427 -0.5577 34 1 8.1075 -2.8742 1.2152 35 1 7.9372 -5.3463 1.2978 36 1 8.0797 -5.4155 -0.4752 37 1 10.3094 -4.3400 -0.3387 38 1 10.1676 -4.2707 1.4342 39 1 13.5556 -5.5967 0.8633 40 1 1.6943 -2.1354 0.0000 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184233361.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:52 Heat of formation + Delta-G solvation = -28.354136 kcal Electronic energy + Delta-G solvation = -20215.702778 eV Core-core repulsion = 17029.147660 eV Total energy + Delta-G solvation = -3186.555118 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.90571 -40.50672 -37.18735 -36.10544 -35.22984 -34.95686 -33.21658 -31.99530 -29.04771 -28.48152 -28.03965 -25.29271 -23.67360 -22.83096 -22.31336 -21.27838 -19.45586 -18.66323 -18.22943 -17.03348 -16.97494 -16.81820 -16.56709 -16.08075 -15.96207 -15.25042 -15.20854 -14.59744 -14.26667 -14.07054 -13.75459 -13.73744 -13.60521 -13.30025 -13.25825 -13.07736 -12.74759 -12.55132 -12.50354 -12.37389 -11.69180 -11.68295 -11.51106 -11.38462 -11.19071 -10.55415 -10.34868 -10.12898 -10.06093 -9.15132 -8.19236 -6.30934 0.16744 0.40868 1.40280 1.42945 1.43392 1.54416 2.07733 2.41925 2.91863 2.98574 3.14463 3.53390 3.77406 4.05670 4.13955 4.21940 4.22200 4.29349 4.54818 4.58043 4.66571 4.75731 4.80966 4.87301 4.91799 4.94684 5.00645 5.07959 5.16783 5.27898 5.35689 5.42244 5.47279 5.52802 5.70771 5.79004 5.84377 5.94298 6.22203 6.79662 6.86946 7.28435 7.38648 7.56618 8.93010 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.043664 B = 0.002517 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.104589 B =11121.446787 C =11719.603700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.016 4.016 3 C -0.206 4.206 4 C 0.133 3.867 5 C -0.101 4.101 6 N -0.531 5.531 7 C 0.357 3.643 8 N -0.657 5.657 9 C 0.687 3.313 10 O -0.581 6.581 11 N -0.724 5.724 12 C 0.151 3.849 13 C -0.099 4.099 14 C 0.023 3.977 15 C -0.540 4.540 16 H 0.068 0.932 17 C -0.006 4.006 18 N -0.936 5.936 19 Si 0.969 3.031 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.259 1.259 23 C -0.212 4.212 24 H 0.089 0.911 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.162 0.838 28 H 0.081 0.919 29 H 0.054 0.946 30 H 0.104 0.896 31 H 0.432 0.568 32 H 0.414 0.586 33 H 0.046 0.954 34 H 0.046 0.954 35 H 0.070 0.930 36 H 0.070 0.930 37 H -0.008 1.008 38 H -0.009 1.009 39 H 0.263 0.737 40 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.331 9.392 -1.936 30.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.024 4.024 3 C -0.227 4.227 4 C -0.004 4.004 5 C -0.158 4.158 6 N -0.247 5.247 7 C 0.125 3.875 8 N -0.308 5.308 9 C 0.386 3.614 10 O -0.456 6.456 11 N -0.381 5.381 12 C 0.026 3.974 13 C -0.137 4.137 14 C -0.015 4.015 15 C -0.578 4.578 16 H 0.086 0.914 17 C -0.203 4.203 18 N -0.576 5.576 19 Si 0.793 3.207 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.183 1.183 23 C -0.235 4.235 24 H 0.107 0.893 25 H 0.104 0.896 26 H 0.103 0.897 27 H 0.179 0.821 28 H 0.100 0.900 29 H 0.073 0.927 30 H 0.123 0.877 31 H 0.272 0.728 32 H 0.250 0.750 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.010 0.990 38 H 0.010 0.990 39 H 0.072 0.928 40 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -27.620 10.317 -1.896 29.545 hybrid contribution 0.071 -1.430 0.060 1.433 sum -27.549 8.887 -1.837 29.005 Atomic orbital electron populations 1.20882 0.87102 1.04667 1.03984 1.20524 0.98428 0.91485 0.91964 1.22046 0.93611 1.00378 1.06675 1.21604 0.92448 0.93173 0.93221 1.20759 0.99739 0.91870 1.03425 1.67402 1.41698 0.98086 1.17555 1.18526 0.88641 0.85563 0.94742 1.42502 1.04960 1.08337 1.74973 1.16281 0.81932 0.84649 0.78534 1.91016 1.68758 1.30191 1.55609 1.45051 1.07450 1.07312 1.78281 1.21099 0.77667 0.98294 1.00313 1.21585 0.96387 0.93499 1.02214 1.18949 0.91490 0.96023 0.95044 1.21676 0.92571 0.93582 1.49938 0.91387 1.26055 0.97648 1.01720 0.94875 1.70119 1.03241 1.32799 1.51463 0.85390 0.77790 0.79175 0.78330 1.19807 1.21104 1.18333 1.21559 0.90677 1.01449 1.09861 0.89296 0.89626 0.89696 0.82088 0.90050 0.92739 0.87704 0.72802 0.74968 0.93517 0.93585 0.91182 0.91135 0.98996 0.99010 0.92827 0.81634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.72 10.06 71.24 0.72 0.00 16 2 C -0.02 -0.24 5.91 -19.69 -0.12 -0.35 16 3 C -0.21 -3.56 9.44 22.37 0.21 -3.35 16 4 C 0.13 3.33 6.78 42.50 0.29 3.62 16 5 C -0.10 -2.06 10.17 71.24 0.72 -1.33 16 6 N -0.53 -17.24 7.80 -181.11 -1.41 -18.65 16 7 C 0.36 9.40 7.42 132.92 0.99 10.39 16 8 N -0.66 -15.83 5.39 -322.20 -1.74 -17.57 16 9 C 0.69 22.76 8.52 179.05 1.53 24.29 16 10 O -0.58 -25.53 14.61 -3.97 -0.06 -25.59 16 11 N -0.72 -21.10 5.56 -478.54 -2.66 -23.76 16 12 C 0.15 5.59 5.67 86.38 0.49 6.08 16 13 C -0.10 -3.85 5.27 30.59 0.16 -3.69 16 14 C 0.02 1.20 4.97 29.85 0.15 1.35 16 15 C -0.54 -30.31 9.11 25.60 0.23 -30.08 16 16 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 17 C -0.01 -0.32 5.46 84.65 0.46 0.15 16 18 N -0.94 -57.87 13.29 21.45 0.28 -57.58 16 19 Si 0.97 44.07 29.54 68.60 2.03 46.10 16 20 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 21 H -0.29 -12.83 7.11 99.48 0.71 -12.13 16 22 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 23 C -0.21 -3.66 9.64 22.49 0.22 -3.44 16 24 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 25 H 0.08 0.37 8.10 -2.39 -0.02 0.35 16 26 H 0.08 0.36 8.10 -2.39 -0.02 0.34 16 27 H 0.16 1.69 8.06 -2.91 -0.02 1.67 16 28 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 29 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.10 1.36 8.08 -2.39 -0.02 1.34 16 31 H 0.43 6.07 8.72 -92.71 -0.81 5.26 16 32 H 0.41 8.60 8.49 -92.71 -0.79 7.81 16 33 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 36 H 0.07 2.54 8.14 -2.38 -0.02 2.52 16 37 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 38 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 39 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 40 H 0.17 1.61 8.06 -2.91 -0.02 1.59 16 Total: -1.00 -81.71 342.86 1.94 -79.77 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -0.55 Total: 13.67 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: 6.05 Total: 3.62 kcal Atomic # 7 Polarization: -112.03 SS G_CDS: -5.53 Total: -117.56 kcal Atomic # 8 Polarization: -25.53 SS G_CDS: -0.06 Total: -25.59 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -81.71 1.94 -79.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184233361.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.411 kcal (2) G-P(sol) polarization free energy of solvation -81.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds