Wall clock time and date at job start Mon Mar 30 2020 02:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.32136 * 119.90251 * 2 1 4 4 C 1.32080 * 120.07327 * 180.02562 * 3 2 1 5 5 C 1.50699 * 120.06566 * 180.02562 * 4 3 2 6 6 C 1.39446 * 119.87490 * 0.02562 * 4 3 2 7 7 C 1.48149 * 120.10272 * 179.97438 * 6 4 3 8 8 O 1.21517 * 119.99603 * 284.29420 * 7 6 4 9 9 N 1.34768 * 119.99787 * 104.28513 * 7 6 4 10 10 C 1.46502 * 120.00555 * 5.05234 * 9 7 6 11 11 C 1.46506 * 120.00086 * 185.04768 * 9 7 6 12 12 H 1.09004 * 109.46567 * 0.02562 * 11 9 7 13 13 C 1.53005 * 109.47045 * 120.00267 * 11 9 7 14 14 C 1.50690 * 109.47383 * 240.00477 * 11 9 7 15 15 H 1.08005 * 120.00011 * 0.02562 * 14 11 9 16 16 C 1.37876 * 120.00075 * 180.02562 * 14 11 9 17 17 N 1.31510 * 120.00047 * 359.97438 * 16 14 11 18 18 Si 1.86807 * 120.00193 * 180.02562 * 16 14 11 19 19 H 1.48503 * 109.46887 * 89.99370 * 18 16 14 20 20 H 1.48495 * 109.47190 * 209.99492 * 18 16 14 21 21 H 1.48501 * 109.46845 * 329.99590 * 18 16 14 22 22 N 1.33009 * 119.80436 * 0.27705 * 6 4 3 23 23 C 1.31800 * 119.92019 * 359.44062 * 22 6 4 24 24 C 1.50708 * 119.93456 * 180.27841 * 23 22 6 25 25 H 1.09005 * 109.47004 * 90.00302 * 1 2 3 26 26 H 1.08999 * 109.47577 * 209.99780 * 1 2 3 27 27 H 1.08993 * 109.47355 * 330.00247 * 1 2 3 28 28 H 1.09009 * 109.47041 * 264.77484 * 5 4 3 29 29 H 1.08991 * 109.46993 * 24.77353 * 5 4 3 30 30 H 1.08995 * 109.47301 * 144.77905 * 5 4 3 31 31 H 1.09007 * 109.47125 * 84.77939 * 10 9 7 32 32 H 1.09002 * 109.46831 * 324.79290 * 10 9 7 33 33 H 1.08993 * 109.47851 * 204.78762 * 10 9 7 34 34 H 1.09004 * 109.47034 * 300.00552 * 13 11 9 35 35 H 1.08998 * 109.46687 * 60.00173 * 13 11 9 36 36 H 1.08991 * 109.47056 * 180.02562 * 13 11 9 37 37 H 0.96999 * 120.00092 * 180.02562 * 17 16 14 38 38 H 1.09005 * 109.47023 * 270.28240 * 24 23 22 39 39 H 1.08993 * 109.46785 * 30.28039 * 24 23 22 40 40 H 1.08990 * 109.47417 * 150.28424 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1657 1.1455 0.0000 4 6 3.4865 1.1494 -0.0005 5 6 4.2376 2.4559 0.0001 6 6 4.1846 -0.0577 -0.0016 7 6 5.6661 -0.0592 -0.0027 8 8 6.2731 0.2005 -1.0229 9 7 6.3405 -0.3483 1.1277 10 6 5.6129 -0.7689 2.3276 11 6 7.8015 -0.2422 1.1566 12 1 8.1615 0.0821 0.1802 13 6 8.2178 0.7781 2.2180 14 6 8.3962 -1.5859 1.4908 15 1 7.7506 -2.4342 1.6640 16 6 9.7645 -1.7323 1.5756 17 7 10.5507 -0.6994 1.3643 18 14 10.5019 -3.3981 1.9893 19 1 10.7477 -4.1555 0.7359 20 1 11.7851 -3.2058 2.7113 21 1 9.5588 -4.1570 2.8494 22 7 3.5166 -1.2078 -0.0077 23 6 2.1986 -1.2026 -0.0015 24 6 1.4414 -2.5056 -0.0021 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5138 28 1 4.4994 2.7249 -1.0233 29 1 3.6099 3.2355 0.4314 30 1 5.1467 2.3521 0.5923 31 1 5.4284 -1.8423 2.2832 32 1 4.6619 -0.2388 2.3803 33 1 6.2066 -0.5385 3.2121 34 1 7.7875 1.7500 1.9762 35 1 7.8576 0.4541 3.1944 36 1 9.3046 0.8574 2.2392 37 1 11.5134 -0.8025 1.4236 38 1 1.2584 -2.8191 -1.0299 39 1 2.0285 -3.2672 0.5110 40 1 0.4896 -2.3730 0.5121 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184964450.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:58 Heat of formation + Delta-G solvation = -15.255690 kcal Electronic energy + Delta-G solvation = -21992.713049 eV Core-core repulsion = 18806.725922 eV Total energy + Delta-G solvation = -3185.987127 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.59757 -40.56514 -37.32287 -36.09679 -35.54364 -34.70040 -31.54878 -31.35198 -29.71099 -27.89913 -27.36544 -27.15160 -24.73656 -23.73830 -22.51484 -20.52234 -19.29649 -18.69916 -18.11723 -17.57332 -16.69007 -16.36141 -16.16557 -15.88024 -15.16910 -14.64832 -14.55316 -14.46151 -14.19810 -13.97800 -13.84437 -13.62881 -13.55114 -13.34886 -13.30619 -13.06186 -12.99246 -12.78288 -12.74818 -12.70601 -12.46772 -12.21735 -12.14489 -11.88722 -11.29983 -11.22374 -10.56184 -10.15896 -9.90909 -9.53154 -8.17398 -6.33607 -0.54423 -0.05968 1.34730 1.40801 1.42527 1.52288 2.00014 2.38698 2.41389 2.86578 3.02395 3.10936 3.27784 3.44724 3.84368 3.95570 4.11385 4.20980 4.46100 4.48910 4.53215 4.62845 4.67177 4.71475 4.77775 4.84069 4.85591 4.89313 4.98690 5.00184 5.07114 5.09217 5.38897 5.47041 5.50833 5.61010 5.96086 6.10485 6.12898 6.56034 6.61250 6.70853 7.06225 7.37668 8.87317 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025914 B = 0.004883 C = 0.004396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.225006 B = 5733.313825 C = 6368.535459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.098 3.902 3 N -0.444 5.444 4 C 0.105 3.895 5 C -0.099 4.099 6 C 0.028 3.972 7 C 0.567 3.433 8 O -0.582 6.582 9 N -0.580 5.580 10 C 0.099 3.901 11 C 0.261 3.739 12 H 0.015 0.985 13 C -0.133 4.133 14 C -0.542 4.542 15 H 0.055 0.945 16 C 0.020 3.980 17 N -0.914 5.914 18 Si 0.964 3.036 19 H -0.283 1.283 20 H -0.276 1.276 21 H -0.264 1.264 22 N -0.436 5.436 23 C 0.069 3.931 24 C -0.099 4.099 25 H 0.102 0.898 26 H 0.115 0.885 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.108 0.892 30 H 0.065 0.935 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.027 0.973 35 H 0.048 0.952 36 H 0.073 0.927 37 H 0.266 0.734 38 H 0.096 0.904 39 H 0.074 0.926 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.851 0.693 2.348 21.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.045 4.045 3 N -0.160 5.160 4 C -0.034 4.034 5 C -0.157 4.157 6 C -0.112 4.112 7 C 0.353 3.647 8 O -0.462 6.462 9 N -0.309 5.309 10 C -0.044 4.044 11 C 0.160 3.840 12 H 0.033 0.967 13 C -0.191 4.191 14 C -0.580 4.580 15 H 0.074 0.926 16 C -0.180 4.180 17 N -0.552 5.552 18 Si 0.789 3.211 19 H -0.209 1.209 20 H -0.201 1.201 21 H -0.188 1.188 22 N -0.152 5.152 23 C -0.076 4.076 24 C -0.156 4.156 25 H 0.120 0.880 26 H 0.133 0.867 27 H 0.105 0.895 28 H 0.104 0.896 29 H 0.127 0.873 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.104 0.896 34 H 0.046 0.954 35 H 0.067 0.933 36 H 0.092 0.908 37 H 0.076 0.924 38 H 0.115 0.885 39 H 0.093 0.907 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -21.242 0.906 1.860 21.343 hybrid contribution 1.250 -0.730 -0.154 1.456 sum -19.992 0.176 1.707 20.066 Atomic orbital electron populations 1.21005 0.83570 1.05907 1.05207 1.23180 1.00699 0.87952 0.92718 1.68311 1.06600 1.29947 1.11145 1.22248 0.90772 0.95785 0.94566 1.20738 0.99017 0.92004 1.03950 1.21657 0.94563 0.91510 1.03507 1.18130 0.85948 0.77043 0.83625 1.90720 1.69766 1.52351 1.33404 1.48175 1.08768 1.62819 1.11110 1.21588 0.95611 0.99575 0.87600 1.18724 0.73865 0.95640 0.95757 0.96661 1.21898 1.03207 0.95817 0.98204 1.21502 0.92243 0.95176 1.49102 0.92645 1.25681 0.97172 1.00533 0.94654 1.69995 1.04459 1.31339 1.49442 0.85463 0.78019 0.79412 0.78176 1.20889 1.20089 1.18817 1.68267 1.10184 1.28233 1.08555 1.22968 0.89062 0.99220 0.96316 1.20958 0.99989 0.89766 1.04894 0.87958 0.86657 0.89478 0.89585 0.87301 0.91607 0.92961 0.91936 0.89590 0.95397 0.93260 0.90810 0.92435 0.88517 0.90708 0.86018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.07 9.78 71.23 0.70 -0.37 16 2 C 0.10 2.19 6.79 42.63 0.29 2.48 16 3 N -0.44 -12.41 10.34 -170.48 -1.76 -14.17 16 4 C 0.10 3.44 6.82 42.81 0.29 3.74 16 5 C -0.10 -2.91 9.69 71.24 0.69 -2.22 16 6 C 0.03 1.08 4.69 41.89 0.20 1.27 16 7 C 0.57 26.67 5.88 86.88 0.51 27.18 16 8 O -0.58 -32.14 16.44 -3.77 -0.06 -32.20 16 9 N -0.58 -26.86 2.75 -829.86 -2.28 -29.14 16 10 C 0.10 3.67 9.40 127.77 1.20 4.87 16 11 C 0.26 14.02 2.63 44.24 0.12 14.13 16 12 H 0.02 0.97 6.91 -2.38 -0.02 0.96 16 13 C -0.13 -6.39 8.96 71.98 0.64 -5.75 16 14 C -0.54 -30.45 8.37 25.60 0.21 -30.24 16 15 H 0.06 3.10 7.65 -2.91 -0.02 3.07 16 16 C 0.02 1.09 5.30 84.66 0.45 1.54 16 17 N -0.91 -52.76 11.32 21.45 0.24 -52.52 16 18 Si 0.96 43.83 29.54 68.60 2.03 45.85 16 19 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 20 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 21 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 22 N -0.44 -15.30 10.32 -172.51 -1.78 -17.08 16 23 C 0.07 1.72 6.79 42.68 0.29 2.01 16 24 C -0.10 -1.45 9.78 71.24 0.70 -0.75 16 25 H 0.10 0.83 8.14 -2.38 -0.02 0.81 16 26 H 0.12 0.53 5.95 -2.39 -0.01 0.52 16 27 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.09 2.53 8.14 -2.38 -0.02 2.51 16 29 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 30 H 0.07 2.12 7.28 -2.39 -0.02 2.10 16 31 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 32 H 0.06 2.03 6.99 -2.39 -0.02 2.01 16 33 H 0.09 3.04 6.44 -2.39 -0.02 3.02 16 34 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.05 2.15 6.66 -2.39 -0.02 2.13 16 36 H 0.07 3.91 6.07 -2.39 -0.01 3.90 16 37 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 38 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 39 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.12 0.80 5.94 -2.39 -0.01 0.78 16 Total: -1.00 -74.95 330.24 3.71 -71.24 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: 1.05 Total: 10.12 kcal Atomic # 6 Polarization: 11.61 SS G_CDS: 6.29 Total: 17.90 kcal Atomic # 7 Polarization: -107.32 SS G_CDS: -5.58 Total: -112.91 kcal Atomic # 8 Polarization: -32.14 SS G_CDS: -0.06 Total: -32.20 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Total: -74.95 3.71 -71.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184964450.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.984 kcal (2) G-P(sol) polarization free energy of solvation -74.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds