Wall clock time and date at job start Mon Mar 30 2020 02:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.32134 * 119.89773 * 2 1 4 4 C 1.32084 * 120.07134 * 180.02562 * 3 2 1 5 5 C 1.50696 * 120.06639 * 179.97438 * 4 3 2 6 6 C 1.39441 * 119.87121 * 0.02562 * 4 3 2 7 7 C 1.48151 * 120.09881 * 179.97438 * 6 4 3 8 8 O 1.21516 * 119.99797 * 5.79022 * 7 6 4 9 9 N 1.34777 * 120.00104 * 185.78179 * 7 6 4 10 10 C 1.46497 * 119.99656 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47051 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47555 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.47469 * 179.97438 * 12 11 10 14 14 H 1.08002 * 119.99852 * 0.02562 * 13 12 11 15 15 C 1.37881 * 120.00309 * 180.02562 * 13 12 11 16 16 N 1.31509 * 119.99650 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99728 * 0.02562 * 15 13 12 18 18 H 1.48506 * 109.46794 * 89.99798 * 17 15 13 19 19 H 1.48495 * 109.46953 * 209.99866 * 17 15 13 20 20 H 1.48500 * 109.47209 * 329.99997 * 17 15 13 21 21 N 1.33004 * 119.80532 * 359.97438 * 6 4 3 22 22 C 1.31797 * 119.92437 * 359.71609 * 21 6 4 23 23 C 1.50710 * 119.93707 * 180.28932 * 22 21 6 24 24 H 1.09004 * 109.47118 * 89.99407 * 1 2 3 25 25 H 1.08997 * 109.47054 * 329.99499 * 1 2 3 26 26 H 1.09000 * 109.46906 * 209.99547 * 1 2 3 27 27 H 1.09002 * 109.47622 * 96.70941 * 5 4 3 28 28 H 1.08996 * 109.47424 * 216.71203 * 5 4 3 29 29 H 1.09000 * 109.47059 * 336.71382 * 5 4 3 30 30 H 0.96995 * 120.00047 * 0.02562 * 9 7 6 31 31 H 1.08995 * 109.47835 * 300.00453 * 10 9 7 32 32 H 1.09000 * 109.47362 * 60.00873 * 10 9 7 33 33 H 1.09003 * 109.47412 * 300.00978 * 11 10 9 34 34 H 1.09004 * 109.47058 * 60.00224 * 11 10 9 35 35 H 1.08995 * 109.47551 * 300.00237 * 12 11 10 36 36 H 1.09004 * 109.46786 * 60.00018 * 12 11 10 37 37 H 0.97012 * 119.99471 * 180.02562 * 16 15 13 38 38 H 1.09001 * 109.46809 * 270.26639 * 23 22 21 39 39 H 1.08997 * 109.46920 * 30.26604 * 23 22 21 40 40 H 1.08997 * 109.47406 * 150.26621 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1657 1.1455 0.0000 4 6 3.4865 1.1495 -0.0005 5 6 4.2375 2.4560 -0.0011 6 6 4.1846 -0.0576 -0.0016 7 6 5.6662 -0.0590 -0.0027 8 8 6.2748 0.9874 0.1034 9 7 6.3389 -1.2208 -0.1214 10 6 7.8038 -1.2220 -0.1231 11 6 8.3125 -2.6575 -0.2699 12 6 9.8424 -2.6589 -0.2711 13 6 10.3434 -4.0729 -0.4151 14 1 9.6407 -4.8889 -0.4980 15 6 11.6987 -4.3249 -0.4410 16 7 12.1358 -5.5588 -0.5672 17 14 12.9140 -2.9136 -0.2969 18 1 13.2361 -2.6820 1.1341 19 1 14.1567 -3.2532 -1.0355 20 1 12.3151 -1.6837 -0.8748 21 7 3.5166 -1.2077 -0.0016 22 6 2.1987 -1.2025 0.0051 23 6 1.4415 -2.5055 0.0117 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3633 0.8899 0.5139 26 1 -0.3633 -0.8900 0.5138 27 1 4.5231 2.7114 1.0193 28 1 5.1326 2.3603 -0.6157 29 1 3.6001 3.2413 -0.4073 30 1 5.8531 -2.0560 -0.2064 31 1 8.1668 -0.6212 -0.9569 32 1 8.1686 -0.8011 0.8139 33 1 7.9495 -3.2587 0.5637 34 1 7.9477 -3.0781 -1.2071 35 1 10.2058 -2.0577 -1.1044 36 1 10.2068 -2.2385 0.6663 37 1 13.0894 -5.7361 -0.5851 38 1 1.2578 -2.8242 -1.0144 39 1 2.0290 -3.2645 0.5283 40 1 0.4900 -2.3703 0.5259 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184971728.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:55 Heat of formation + Delta-G solvation = -32.022670 kcal Electronic energy + Delta-G solvation = -20620.887495 eV Core-core repulsion = 17434.173297 eV Total energy + Delta-G solvation = -3186.714198 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.61802 -40.54642 -37.20630 -36.14160 -35.38695 -35.12314 -33.30495 -31.20420 -30.13962 -28.96216 -27.20350 -24.97821 -24.43044 -23.01972 -22.29484 -21.57105 -19.47227 -19.04879 -18.35478 -17.18957 -16.93215 -16.44821 -16.26315 -16.19906 -15.44762 -15.37387 -14.78493 -14.57776 -14.37794 -13.97569 -13.88071 -13.80319 -13.74836 -13.60257 -13.38616 -13.13494 -12.86114 -12.74535 -12.69826 -12.47915 -11.92441 -11.89322 -11.77363 -11.60936 -11.34332 -11.17608 -10.76369 -10.28686 -10.21130 -9.88955 -8.29504 -6.33701 -0.76027 -0.11848 1.37536 1.39047 1.51065 1.53415 1.91738 2.36657 2.52785 2.79306 2.88491 3.06276 3.21813 3.54642 3.79382 3.95920 4.07124 4.14999 4.17115 4.47873 4.54082 4.65911 4.67243 4.74988 4.78736 4.84204 4.86155 4.87163 4.97263 5.01672 5.07907 5.18542 5.35600 5.46134 5.47654 5.54229 5.64459 6.02952 6.27161 6.33163 6.60397 6.74299 6.99184 7.31048 8.87071 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030117 B = 0.003125 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.483722 B = 8958.293444 C = 9842.046728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.111 3.889 3 N -0.459 5.459 4 C 0.126 3.874 5 C -0.099 4.099 6 C -0.001 4.001 7 C 0.569 3.431 8 O -0.549 6.549 9 N -0.700 5.700 10 C 0.126 3.874 11 C -0.101 4.101 12 C -0.010 4.010 13 C -0.532 4.532 14 H 0.035 0.965 15 C 0.004 3.996 16 N -0.951 5.951 17 Si 0.949 3.051 18 H -0.267 1.267 19 H -0.285 1.285 20 H -0.245 1.245 21 N -0.423 5.423 22 C 0.065 3.935 23 C -0.101 4.101 24 H 0.105 0.895 25 H 0.084 0.916 26 H 0.115 0.885 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.415 0.585 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.024 0.976 36 H 0.022 0.978 37 H 0.266 0.734 38 H 0.099 0.901 39 H 0.078 0.922 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.939 12.551 1.251 29.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.033 4.033 3 N -0.175 5.175 4 C -0.013 4.013 5 C -0.156 4.156 6 C -0.140 4.140 7 C 0.354 3.646 8 O -0.428 6.428 9 N -0.350 5.350 10 C 0.003 3.997 11 C -0.139 4.139 12 C -0.048 4.048 13 C -0.570 4.570 14 H 0.054 0.946 15 C -0.193 4.193 16 N -0.592 5.592 17 Si 0.772 3.228 18 H -0.192 1.192 19 H -0.211 1.211 20 H -0.169 1.169 21 N -0.140 5.140 22 C -0.080 4.080 23 C -0.159 4.159 24 H 0.123 0.877 25 H 0.103 0.897 26 H 0.133 0.867 27 H 0.105 0.895 28 H 0.111 0.889 29 H 0.104 0.896 30 H 0.252 0.748 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.042 0.958 36 H 0.041 0.959 37 H 0.075 0.925 38 H 0.117 0.883 39 H 0.097 0.903 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -26.245 13.208 1.309 29.410 hybrid contribution 0.970 -0.401 -0.010 1.049 sum -25.275 12.807 1.299 28.364 Atomic orbital electron populations 1.21052 0.83980 1.05845 1.05338 1.23216 1.00673 0.88181 0.91203 1.68398 1.07290 1.30011 1.11790 1.22485 0.90390 0.96743 0.91686 1.20964 0.99603 0.90662 1.04393 1.21751 0.94938 0.91073 1.06256 1.17852 0.85709 0.84047 0.76957 1.90722 1.69258 1.31530 1.51316 1.45898 1.07743 1.09485 1.71869 1.21453 0.78100 0.98057 1.02133 1.21489 0.96465 0.94030 1.01947 1.19454 0.93286 0.95094 0.96993 1.21467 0.92360 0.93411 1.49784 0.94635 1.26008 1.00778 0.98315 0.94195 1.70066 1.15156 1.21616 1.52354 0.85670 0.77875 0.80153 0.79052 1.19199 1.21064 1.16888 1.68143 1.10081 1.28256 1.07546 1.22854 0.89361 0.98892 0.96897 1.20964 0.99962 0.89870 1.05061 0.87690 0.89695 0.86687 0.89545 0.88856 0.89613 0.74816 0.91447 0.91469 0.91972 0.91967 0.95796 0.95945 0.92493 0.88262 0.90330 0.86675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.74 9.79 71.24 0.70 -0.04 16 2 C 0.11 1.89 6.79 42.63 0.29 2.18 16 3 N -0.46 -10.37 10.34 -170.49 -1.76 -12.13 16 4 C 0.13 3.21 6.82 42.81 0.29 3.50 16 5 C -0.10 -2.28 8.88 71.23 0.63 -1.64 16 6 C 0.00 -0.03 6.75 41.89 0.28 0.26 16 7 C 0.57 17.54 7.75 86.88 0.67 18.21 16 8 O -0.55 -18.80 13.33 -3.77 -0.05 -18.85 16 9 N -0.70 -20.78 5.54 -465.69 -2.58 -23.36 16 10 C 0.13 4.09 5.67 86.38 0.49 4.59 16 11 C -0.10 -3.79 5.27 30.59 0.16 -3.63 16 12 C -0.01 -0.47 4.04 29.85 0.12 -0.35 16 13 C -0.53 -30.54 9.66 25.60 0.25 -30.29 16 14 H 0.04 2.22 7.99 -2.91 -0.02 2.20 16 15 C 0.00 0.22 5.47 84.66 0.46 0.69 16 16 N -0.95 -59.86 13.96 21.45 0.30 -59.56 16 17 Si 0.95 44.44 27.47 68.60 1.88 46.32 16 18 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 19 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 20 H -0.25 -10.67 6.54 99.48 0.65 -10.01 16 21 N -0.42 -10.34 9.65 -172.53 -1.67 -12.01 16 22 C 0.07 1.18 6.79 42.68 0.29 1.47 16 23 C -0.10 -0.93 9.78 71.24 0.70 -0.23 16 24 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 25 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.11 0.16 5.93 -2.39 -0.01 0.15 16 27 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.09 2.43 5.84 -2.39 -0.01 2.42 16 29 H 0.09 1.64 8.14 -2.39 -0.02 1.63 16 30 H 0.42 11.28 7.84 -92.71 -0.73 10.55 16 31 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.06 2.30 8.14 -2.38 -0.02 2.29 16 35 H 0.02 1.08 7.20 -2.39 -0.02 1.06 16 36 H 0.02 1.00 7.57 -2.38 -0.02 0.98 16 37 H 0.27 15.62 8.31 -92.70 -0.77 14.85 16 38 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.11 0.31 5.94 -2.39 -0.01 0.30 16 Total: -1.00 -72.77 332.56 1.73 -71.04 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: 0.27 Total: 13.84 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: 5.34 Total: -5.30 kcal Atomic # 7 Polarization: -101.34 SS G_CDS: -5.71 Total: -107.05 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: -0.05 Total: -18.85 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.88 Total: 46.32 kcal Total: -72.77 1.73 -71.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184971728.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.017 kcal (2) G-P(sol) polarization free energy of solvation -72.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds