Wall clock time and date at job start Mon Mar 30 2020 02:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38221 * 120.41773 * 2 1 4 4 N 1.31862 * 120.76221 * 180.25125 * 3 2 1 5 5 C 1.31881 * 121.72315 * 0.04192 * 4 3 2 6 6 C 1.38185 * 120.76978 * 359.96041 * 5 4 3 7 7 C 1.38635 * 120.41887 * 180.27454 * 2 1 3 8 8 C 1.50701 * 120.78677 * 359.70635 * 7 2 1 9 9 N 1.46496 * 109.47230 * 79.99891 * 8 7 2 10 10 C 1.34774 * 119.99924 * 179.97438 * 9 8 7 11 11 O 1.21584 * 120.00230 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99997 * 180.02562 * 10 9 8 13 13 C 1.46500 * 120.00400 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.47681 * 180.02562 * 13 12 10 15 15 C 1.52992 * 109.47293 * 180.02562 * 14 13 12 16 16 C 1.50708 * 109.47312 * 179.97438 * 15 14 13 17 17 H 1.07995 * 119.99576 * 359.97438 * 16 15 14 18 18 C 1.37873 * 120.00166 * 179.97438 * 16 15 14 19 19 N 1.31518 * 120.00142 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99891 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46724 * 90.00032 * 20 18 16 22 22 H 1.48494 * 109.47113 * 209.99978 * 20 18 16 23 23 H 1.48501 * 109.47099 * 330.00309 * 20 18 16 24 24 H 1.08999 * 109.47245 * 269.72372 * 1 2 3 25 25 H 1.08991 * 109.46674 * 29.72400 * 1 2 3 26 26 H 1.09007 * 109.46846 * 149.72305 * 1 2 3 27 27 H 1.07993 * 119.62150 * 0.27487 * 3 2 1 28 28 H 1.08011 * 119.61586 * 179.97438 * 5 4 3 29 29 H 1.07998 * 120.41936 * 180.02562 * 6 5 4 30 30 H 1.09006 * 109.46544 * 199.99819 * 8 7 2 31 31 H 1.09000 * 109.47530 * 319.99483 * 8 7 2 32 32 H 0.97001 * 120.00401 * 0.02562 * 9 8 7 33 33 H 0.97005 * 120.00153 * 0.02562 * 12 10 9 34 34 H 1.09008 * 109.46980 * 299.99927 * 13 12 10 35 35 H 1.08998 * 109.46928 * 59.99781 * 13 12 10 36 36 H 1.08999 * 109.46824 * 299.99873 * 14 13 12 37 37 H 1.08998 * 109.47288 * 59.99794 * 14 13 12 38 38 H 1.09008 * 109.47080 * 299.99543 * 15 14 13 39 39 H 1.09006 * 109.47557 * 59.99751 * 15 14 13 40 40 H 0.96997 * 120.00032 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1920 0.0000 4 7 3.5254 1.1999 -0.0050 5 6 4.2256 0.0823 -0.0109 6 6 3.5948 -1.1471 -0.0113 7 6 2.2090 -1.1955 -0.0057 8 6 1.4831 -2.5162 -0.0054 9 7 1.0317 -2.8256 -1.3643 10 6 0.3554 -3.9660 -1.6064 11 8 0.1203 -4.7381 -0.6971 12 7 -0.0595 -4.2509 -2.8567 13 6 -0.7952 -5.4902 -3.1198 14 6 -1.1452 -5.5696 -4.6071 15 6 -1.9141 -6.8635 -4.8817 16 6 -2.2594 -6.9414 -6.3466 17 1 -1.9608 -6.1473 -7.0147 18 6 -2.9566 -8.0266 -6.8337 19 7 -3.3199 -8.9940 -6.0201 20 14 -3.3853 -8.1228 -8.6493 21 1 -2.2916 -8.8117 -9.3803 22 1 -4.6498 -8.8824 -8.8198 23 1 -3.5552 -6.7506 -9.1912 24 1 -0.3634 -0.0050 1.0276 25 1 -0.3632 0.8924 -0.5095 26 1 -0.3633 -0.8876 -0.5182 27 1 1.6675 2.1276 0.0045 28 1 5.3047 0.1285 -0.0153 29 1 4.1737 -2.0588 -0.0158 30 1 2.1561 -3.3005 0.3414 31 1 0.6212 -2.4570 0.6592 32 1 1.2201 -2.2102 -2.0900 33 1 0.1290 -3.6354 -3.5824 34 1 -0.1765 -6.3450 -2.8464 35 1 -1.7114 -5.5012 -2.5294 36 1 -1.7637 -4.7149 -4.8808 37 1 -0.2289 -5.5588 -5.1971 38 1 -1.2959 -7.7186 -4.6078 39 1 -2.8305 -6.8739 -4.2916 40 1 -3.8100 -9.7576 -6.3629 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186557748.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:39 Heat of formation + Delta-G solvation = -16.978401 kcal Electronic energy + Delta-G solvation = -20114.411790 eV Core-core repulsion = 16928.349961 eV Total energy + Delta-G solvation = -3186.061829 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.87158 -39.72130 -36.10258 -35.16010 -33.53763 -33.24226 -32.37673 -31.04910 -28.11439 -27.18901 -26.02369 -23.26862 -22.91852 -21.81989 -20.90807 -20.41969 -18.34182 -17.16860 -16.94980 -16.37169 -15.92863 -15.58353 -15.45993 -14.74795 -14.48339 -14.32464 -14.16322 -13.95729 -13.79718 -13.21791 -13.12417 -12.80978 -12.50659 -12.28970 -11.90115 -11.82114 -11.66984 -10.91279 -10.74169 -10.60330 -10.36119 -9.95477 -9.87283 -9.85510 -9.45281 -9.31937 -9.30669 -9.13411 -8.65579 -8.37960 -6.02598 -4.05744 0.68384 0.71685 2.78734 3.30067 3.30204 3.36525 3.39129 3.41965 4.04005 4.13197 4.31879 4.36447 4.44794 4.49373 4.57309 5.02305 5.10979 5.18949 5.23883 5.32396 5.33178 5.45578 5.54493 5.68910 5.73728 5.79571 5.94366 6.16112 6.26194 6.31062 6.49566 6.60668 6.76172 7.00091 7.01680 7.56082 7.62866 7.75556 7.96224 8.07834 8.37039 8.68239 9.00949 9.58458 11.08684 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036188 B = 0.002412 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.546853 B =11605.233696 C =11802.353088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.117 4.117 3 C 0.095 3.905 4 N -0.479 5.479 5 C 0.089 3.911 6 C -0.148 4.148 7 C -0.065 4.065 8 C 0.180 3.820 9 N -0.748 5.748 10 C 0.701 3.299 11 O -0.591 6.591 12 N -0.740 5.740 13 C 0.135 3.865 14 C -0.120 4.120 15 C 0.024 3.976 16 C -0.522 4.522 17 H 0.055 0.945 18 C 0.057 3.943 19 N -0.894 5.894 20 Si 0.893 3.107 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.274 1.274 24 H 0.077 0.923 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.156 0.844 28 H 0.157 0.843 29 H 0.138 0.862 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.396 0.604 33 H 0.394 0.606 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.265 19.856 12.343 26.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.119 4.119 3 C -0.062 4.062 4 N -0.187 5.187 5 C -0.068 4.068 6 C -0.169 4.169 7 C -0.073 4.073 8 C 0.056 3.944 9 N -0.405 5.405 10 C 0.401 3.599 11 O -0.469 6.469 12 N -0.394 5.394 13 C 0.012 3.988 14 C -0.158 4.158 15 C -0.014 4.014 16 C -0.561 4.561 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.533 5.533 20 Si 0.721 3.279 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 H 0.095 0.905 25 H 0.091 0.909 26 H 0.095 0.905 27 H 0.173 0.827 28 H 0.174 0.826 29 H 0.156 0.844 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.229 0.771 33 H 0.227 0.773 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.038 0.962 39 H 0.038 0.962 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 12.372 19.719 13.203 26.762 hybrid contribution -0.438 -0.371 -1.670 1.766 sum 11.935 19.348 11.532 25.491 Atomic orbital electron populations 1.20846 0.89841 1.03818 1.03133 1.20918 0.97840 0.93470 0.99715 1.22718 0.89885 0.97468 0.96116 1.67678 1.08379 1.31554 1.11095 1.22773 1.00492 0.87527 0.95984 1.22156 0.94368 1.00038 1.00306 1.20262 0.93869 0.94827 0.98366 1.19939 0.98435 0.91907 0.84086 1.45086 1.61954 1.23204 1.10248 1.15983 0.78699 0.81450 0.83799 1.90932 1.62378 1.49705 1.43898 1.45392 1.60807 1.25579 1.07659 1.21529 0.95226 0.83859 0.98216 1.21889 1.00521 1.01925 0.91495 1.19031 0.95027 0.90571 0.96757 1.21200 1.35659 1.05398 0.93806 0.92668 1.25032 0.95889 0.95766 0.97800 1.69965 1.39135 1.09407 1.34752 0.86581 0.77867 0.78066 0.85395 1.20660 1.21200 1.19910 0.90489 0.90877 0.90509 0.82653 0.82571 0.84382 0.90437 0.90196 0.77088 0.77288 0.91912 0.91892 0.92766 0.92770 0.96240 0.96230 0.92915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.75 9.35 36.01 0.34 -0.41 16 2 C -0.12 -0.88 5.90 -104.48 -0.62 -1.49 16 3 C 0.10 0.75 10.86 -17.54 -0.19 0.56 16 4 N -0.48 -4.42 10.36 -13.25 -0.14 -4.56 16 5 C 0.09 0.68 11.18 -17.55 -0.20 0.48 16 6 C -0.15 -1.07 9.78 -39.44 -0.39 -1.46 16 7 C -0.06 -0.51 5.29 -104.32 -0.55 -1.06 16 8 C 0.18 1.67 4.98 -5.20 -0.03 1.64 16 9 N -0.75 -7.61 4.98 -66.42 -0.33 -7.94 16 10 C 0.70 10.22 8.57 -86.92 -0.74 9.47 16 11 O -0.59 -11.20 16.34 5.29 0.09 -11.12 16 12 N -0.74 -10.38 5.56 -65.23 -0.36 -10.74 16 13 C 0.13 2.36 5.67 -4.04 -0.02 2.33 16 14 C -0.12 -2.32 5.27 -26.74 -0.14 -2.46 16 15 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 16 C -0.52 -14.51 9.11 -34.44 -0.31 -14.82 16 17 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.89 -26.74 13.29 55.43 0.74 -26.01 16 20 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 24 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 26 H 0.08 0.57 6.53 -51.93 -0.34 0.23 16 27 H 0.16 0.88 8.06 -52.49 -0.42 0.45 16 28 H 0.16 0.81 8.06 -52.48 -0.42 0.39 16 29 H 0.14 0.78 8.06 -52.49 -0.42 0.35 16 30 H 0.08 0.75 8.04 -51.93 -0.42 0.34 16 31 H 0.08 0.78 7.40 -51.93 -0.38 0.40 16 32 H 0.40 3.17 8.48 -40.82 -0.35 2.82 16 33 H 0.39 4.38 8.49 -40.82 -0.35 4.04 16 34 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 35 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.02 0.52 8.14 -51.92 -0.42 0.10 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 342.02 15.07 5.15 5.15 Total: -1.00 -33.79 342.02 -8.98 -42.77 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -6.02 Total: 1.30 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: -3.09 Total: -5.25 kcal Atomic # 7 Polarization: -49.15 SS G_CDS: -0.09 Total: -49.24 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.09 Total: -11.12 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.79 -8.98 -42.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186557748.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.794 kcal (2) G-P(sol) polarization free energy of solvation -33.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds