Wall clock time and date at job start Mon Mar 30 2020 02:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38221 * 120.41773 * 2 1 4 4 N 1.31862 * 120.76221 * 180.25125 * 3 2 1 5 5 C 1.31881 * 121.72315 * 0.04192 * 4 3 2 6 6 C 1.38185 * 120.76978 * 359.96041 * 5 4 3 7 7 C 1.38635 * 120.41887 * 180.27454 * 2 1 3 8 8 C 1.50701 * 120.78677 * 359.70635 * 7 2 1 9 9 N 1.46496 * 109.47230 * 79.99891 * 8 7 2 10 10 C 1.34774 * 119.99924 * 179.97438 * 9 8 7 11 11 O 1.21584 * 120.00230 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99997 * 180.02562 * 10 9 8 13 13 C 1.46500 * 120.00400 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.47681 * 180.02562 * 13 12 10 15 15 C 1.52992 * 109.47293 * 180.02562 * 14 13 12 16 16 C 1.50708 * 109.47312 * 179.97438 * 15 14 13 17 17 H 1.07995 * 119.99576 * 359.97438 * 16 15 14 18 18 C 1.37873 * 120.00166 * 179.97438 * 16 15 14 19 19 N 1.31518 * 120.00142 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99891 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46724 * 90.00032 * 20 18 16 22 22 H 1.48494 * 109.47113 * 209.99978 * 20 18 16 23 23 H 1.48501 * 109.47099 * 330.00309 * 20 18 16 24 24 H 1.08999 * 109.47245 * 269.72372 * 1 2 3 25 25 H 1.08991 * 109.46674 * 29.72400 * 1 2 3 26 26 H 1.09007 * 109.46846 * 149.72305 * 1 2 3 27 27 H 1.07993 * 119.62150 * 0.27487 * 3 2 1 28 28 H 1.08011 * 119.61586 * 179.97438 * 5 4 3 29 29 H 1.07998 * 120.41936 * 180.02562 * 6 5 4 30 30 H 1.09006 * 109.46544 * 199.99819 * 8 7 2 31 31 H 1.09000 * 109.47530 * 319.99483 * 8 7 2 32 32 H 0.97001 * 120.00401 * 0.02562 * 9 8 7 33 33 H 0.97005 * 120.00153 * 0.02562 * 12 10 9 34 34 H 1.09008 * 109.46980 * 299.99927 * 13 12 10 35 35 H 1.08998 * 109.46928 * 59.99781 * 13 12 10 36 36 H 1.08999 * 109.46824 * 299.99873 * 14 13 12 37 37 H 1.08998 * 109.47288 * 59.99794 * 14 13 12 38 38 H 1.09008 * 109.47080 * 299.99543 * 15 14 13 39 39 H 1.09006 * 109.47557 * 59.99751 * 15 14 13 40 40 H 0.96997 * 120.00032 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1920 0.0000 4 7 3.5254 1.1999 -0.0050 5 6 4.2256 0.0823 -0.0109 6 6 3.5948 -1.1471 -0.0113 7 6 2.2090 -1.1955 -0.0057 8 6 1.4831 -2.5162 -0.0054 9 7 1.0317 -2.8256 -1.3643 10 6 0.3554 -3.9660 -1.6064 11 8 0.1203 -4.7381 -0.6971 12 7 -0.0595 -4.2509 -2.8567 13 6 -0.7952 -5.4902 -3.1198 14 6 -1.1452 -5.5696 -4.6071 15 6 -1.9141 -6.8635 -4.8817 16 6 -2.2594 -6.9414 -6.3466 17 1 -1.9608 -6.1473 -7.0147 18 6 -2.9566 -8.0266 -6.8337 19 7 -3.3199 -8.9940 -6.0201 20 14 -3.3853 -8.1228 -8.6493 21 1 -2.2916 -8.8117 -9.3803 22 1 -4.6498 -8.8824 -8.8198 23 1 -3.5552 -6.7506 -9.1912 24 1 -0.3634 -0.0050 1.0276 25 1 -0.3632 0.8924 -0.5095 26 1 -0.3633 -0.8876 -0.5182 27 1 1.6675 2.1276 0.0045 28 1 5.3047 0.1285 -0.0153 29 1 4.1737 -2.0588 -0.0158 30 1 2.1561 -3.3005 0.3414 31 1 0.6212 -2.4570 0.6592 32 1 1.2201 -2.2102 -2.0900 33 1 0.1290 -3.6354 -3.5824 34 1 -0.1765 -6.3450 -2.8464 35 1 -1.7114 -5.5012 -2.5294 36 1 -1.7637 -4.7149 -4.8808 37 1 -0.2289 -5.5588 -5.1971 38 1 -1.2959 -7.7186 -4.6078 39 1 -2.8305 -6.8739 -4.2916 40 1 -3.8100 -9.7576 -6.3629 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186557748.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:39 Heat of formation + Delta-G solvation = -40.233766 kcal Electronic energy + Delta-G solvation = -20115.420219 eV Core-core repulsion = 16928.349961 eV Total energy + Delta-G solvation = -3187.070258 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.55747 -40.79824 -37.25424 -36.39991 -35.18648 -34.18862 -33.25392 -32.59456 -29.07489 -28.27789 -27.19553 -24.85361 -23.66899 -22.48720 -22.29710 -21.88238 -19.45310 -18.55413 -17.81183 -17.63146 -16.96346 -16.79733 -16.47513 -16.01618 -15.68821 -15.57176 -15.25465 -14.96010 -14.41486 -14.25755 -14.09200 -13.72492 -13.64081 -13.55104 -13.42463 -13.06050 -12.74178 -12.53525 -12.40379 -12.35803 -11.69718 -11.65653 -11.36332 -11.17496 -10.64848 -10.54384 -10.45187 -10.42811 -9.86355 -9.80774 -8.18594 -6.29945 0.07276 0.15790 1.42396 1.43659 1.54542 1.74866 2.12085 2.42655 2.80516 3.15219 3.35500 3.43595 3.58688 3.76605 3.95008 4.02267 4.18070 4.25152 4.43997 4.52166 4.56750 4.58034 4.73829 4.75103 4.86496 4.97693 4.99943 5.02161 5.18389 5.22219 5.33200 5.38327 5.47365 5.55217 5.72772 5.74640 5.85656 5.95531 6.23750 6.87490 6.99601 7.06268 7.39595 7.54566 8.93519 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036188 B = 0.002412 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.546853 B =11605.233696 C =11802.353088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.117 4.117 3 C 0.087 3.913 4 N -0.503 5.503 5 C 0.081 3.919 6 C -0.147 4.147 7 C -0.071 4.071 8 C 0.184 3.816 9 N -0.726 5.726 10 C 0.701 3.299 11 O -0.637 6.637 12 N -0.729 5.729 13 C 0.150 3.850 14 C -0.100 4.100 15 C 0.023 3.977 16 C -0.540 4.540 17 H 0.066 0.934 18 C -0.004 4.004 19 N -0.935 5.935 20 Si 0.967 3.033 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.260 1.260 24 H 0.081 0.919 25 H 0.088 0.912 26 H 0.064 0.936 27 H 0.174 0.826 28 H 0.177 0.823 29 H 0.154 0.846 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.410 0.590 33 H 0.412 0.588 34 H 0.047 0.953 35 H 0.048 0.952 36 H 0.068 0.932 37 H 0.067 0.933 38 H -0.008 1.008 39 H -0.007 1.007 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.077 21.786 11.198 27.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.119 4.119 3 C -0.070 4.070 4 N -0.211 5.211 5 C -0.075 4.075 6 C -0.167 4.167 7 C -0.079 4.079 8 C 0.060 3.940 9 N -0.383 5.383 10 C 0.400 3.600 11 O -0.518 6.518 12 N -0.385 5.385 13 C 0.025 3.975 14 C -0.138 4.138 15 C -0.015 4.015 16 C -0.578 4.578 17 H 0.085 0.915 18 C -0.202 4.202 19 N -0.575 5.575 20 Si 0.791 3.209 21 H -0.199 1.199 22 H -0.211 1.211 23 H -0.184 1.184 24 H 0.100 0.900 25 H 0.106 0.894 26 H 0.083 0.917 27 H 0.191 0.809 28 H 0.194 0.806 29 H 0.171 0.829 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.246 0.754 33 H 0.248 0.752 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.011 0.989 39 H 0.011 0.989 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 13.219 21.723 12.034 28.133 hybrid contribution -0.656 -0.937 -1.247 1.692 sum 12.564 20.786 10.787 26.575 Atomic orbital electron populations 1.20844 0.89063 1.03958 1.03488 1.21028 0.98388 0.93247 0.99246 1.23038 0.89722 0.98327 0.95867 1.67703 1.09130 1.32461 1.11845 1.23147 1.01557 0.87239 0.95553 1.22334 0.94174 1.00661 0.99550 1.20167 0.94203 0.94140 0.99408 1.19929 0.98252 0.92646 0.83166 1.44879 1.60328 1.21804 1.11287 1.16083 0.78732 0.81998 0.83143 1.90908 1.64173 1.51512 1.45257 1.45027 1.60354 1.24767 1.08331 1.21080 0.94719 0.84958 0.96720 1.21582 1.00401 0.99087 0.92755 1.18948 0.94187 0.92757 0.95578 1.21682 1.35390 1.05681 0.95041 0.91540 1.26025 0.95820 0.95406 1.02915 1.70112 1.40103 1.10183 1.37149 0.85420 0.77556 0.78657 0.79236 1.19857 1.21085 1.18420 0.90024 0.89363 0.91684 0.80887 0.80552 0.82875 0.90812 0.90785 0.75413 0.75214 0.93476 0.93376 0.91351 0.91408 0.98944 0.98888 0.92830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.27 9.35 71.24 0.67 -0.60 16 2 C -0.12 -1.56 5.90 -19.77 -0.12 -1.67 16 3 C 0.09 1.22 10.86 84.68 0.92 2.14 16 4 N -0.50 -8.49 10.36 -195.84 -2.03 -10.52 16 5 C 0.08 1.09 11.18 84.67 0.95 2.04 16 6 C -0.15 -1.86 9.78 22.36 0.22 -1.64 16 7 C -0.07 -1.01 5.29 -19.67 -0.10 -1.11 16 8 C 0.18 3.21 4.98 85.63 0.43 3.63 16 9 N -0.73 -13.71 4.98 -482.30 -2.40 -16.11 16 10 C 0.70 19.84 8.57 179.06 1.53 21.37 16 11 O -0.64 -24.27 16.34 -3.98 -0.07 -24.34 16 12 N -0.73 -19.50 5.56 -478.54 -2.66 -22.16 16 13 C 0.15 5.23 5.67 86.38 0.49 5.72 16 14 C -0.10 -3.79 5.27 30.59 0.16 -3.63 16 15 C 0.02 1.19 4.97 29.85 0.15 1.34 16 16 C -0.54 -29.91 9.11 25.60 0.23 -29.67 16 17 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 18 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 19 N -0.94 -56.99 13.29 21.45 0.28 -56.70 16 20 Si 0.97 43.55 29.54 68.60 2.03 45.58 16 21 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 22 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 23 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 24 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.09 0.69 8.09 -2.39 -0.02 0.67 16 26 H 0.06 0.87 6.53 -2.38 -0.02 0.86 16 27 H 0.17 1.62 8.06 -2.91 -0.02 1.59 16 28 H 0.18 1.47 8.06 -2.91 -0.02 1.45 16 29 H 0.15 1.41 8.06 -2.91 -0.02 1.38 16 30 H 0.07 1.38 8.04 -2.38 -0.02 1.36 16 31 H 0.07 1.41 7.40 -2.39 -0.02 1.40 16 32 H 0.41 5.63 8.48 -92.71 -0.79 4.85 16 33 H 0.41 8.14 8.49 -92.70 -0.79 7.35 16 34 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 35 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 37 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 38 H -0.01 -0.44 8.14 -2.38 -0.02 -0.46 16 39 H -0.01 -0.41 8.14 -2.38 -0.02 -0.43 16 40 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -73.37 342.02 0.62 -72.75 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -0.52 Total: 13.36 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: 5.99 Total: -1.86 kcal Atomic # 7 Polarization: -98.69 SS G_CDS: -6.80 Total: -105.49 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: -0.07 Total: -24.34 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -73.37 0.62 -72.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186557748.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.514 kcal (2) G-P(sol) polarization free energy of solvation -73.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds