Wall clock time and date at job start Mon Mar 30 2020 01:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39835 * 126.45797 * 2 1 4 4 C 1.35454 * 107.86541 * 180.02562 * 3 2 1 5 5 N 1.35532 * 108.86837 * 0.02562 * 4 3 2 6 6 C 1.46509 * 125.67563 * 179.97438 * 5 4 3 7 7 C 1.37653 * 108.64743 * 0.24298 * 5 4 3 8 8 C 1.46672 * 126.23148 * 179.75666 * 7 5 4 9 9 O 1.21697 * 120.00524 * 268.60248 * 8 7 5 10 10 N 1.34783 * 120.00347 * 88.60617 * 8 7 5 11 11 C 1.46964 * 120.59102 * 4.49513 * 10 8 7 12 12 C 1.53804 * 108.40132 * 124.75569 * 11 10 8 13 13 N 1.46969 * 108.57815 * 49.63670 * 12 11 10 14 14 C 1.36939 * 120.59458 * 124.62157 * 13 12 11 15 15 H 1.07990 * 120.00196 * 212.12305 * 14 13 12 16 16 C 1.38818 * 119.99781 * 32.12757 * 14 13 12 17 17 N 1.31618 * 120.00024 * 10.55665 * 16 14 13 18 18 Si 1.86796 * 119.99956 * 190.56189 * 16 14 13 19 19 H 1.48498 * 109.47210 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47368 * 119.99629 * 18 16 14 21 21 H 1.48505 * 109.46878 * 239.99882 * 18 16 14 22 22 C 1.46964 * 118.81278 * 304.64983 * 13 12 11 23 23 C 1.46961 * 120.59970 * 184.77230 * 10 8 7 24 24 H 1.09004 * 109.47265 * 89.97260 * 1 2 3 25 25 H 1.09006 * 109.47562 * 209.97040 * 1 2 3 26 26 H 1.09001 * 109.47626 * 329.97614 * 1 2 3 27 27 H 1.08000 * 126.06592 * 0.04369 * 3 2 1 28 28 H 1.07991 * 125.56393 * 180.02562 * 4 3 2 29 29 H 1.09001 * 109.46724 * 85.09515 * 6 5 4 30 30 H 1.08998 * 109.46834 * 325.09106 * 6 5 4 31 31 H 1.08996 * 109.47244 * 205.09182 * 6 5 4 32 32 H 1.08998 * 109.60950 * 244.54386 * 11 10 8 33 33 H 1.09002 * 109.61076 * 5.04890 * 11 10 8 34 34 H 1.08999 * 109.74824 * 289.85141 * 12 11 10 35 35 H 1.09002 * 109.53785 * 169.30468 * 12 11 10 36 36 H 0.96998 * 120.00287 * 180.02562 * 17 16 14 37 37 H 1.09002 * 109.60860 * 295.47650 * 22 13 12 38 38 H 1.08998 * 109.60737 * 174.96742 * 22 13 12 39 39 H 1.09002 * 109.60763 * 354.95288 * 23 10 8 40 40 H 1.08998 * 109.61044 * 115.45176 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6217 0.6928 -0.0006 5 7 3.6283 -0.6625 -0.0015 6 6 4.8225 -1.5112 -0.0029 7 6 2.3261 -1.1089 -0.0071 8 6 1.8898 -2.5092 -0.0148 9 8 1.6870 -3.0776 -1.0716 10 7 1.7133 -3.1666 1.1485 11 6 1.8586 -2.4667 2.4326 12 6 0.5653 -2.6629 3.2415 13 7 0.2300 -4.0939 3.2487 14 6 0.0517 -4.7620 4.4307 15 1 0.3166 -5.8062 4.5061 16 6 -0.4697 -4.0969 5.5321 17 7 -0.9843 -2.8937 5.3914 18 14 -0.4407 -4.9096 7.2137 19 1 0.1862 -6.2513 7.1044 20 1 0.3443 -4.0714 8.1551 21 1 -1.8300 -5.0525 7.7184 22 6 0.0902 -4.7950 1.9648 23 6 1.3781 -4.5975 1.1557 24 1 -0.3634 0.0005 -1.0277 25 1 -0.3634 -0.8903 0.5134 26 1 -0.3634 0.8898 0.5142 27 1 2.0136 2.1548 0.0007 28 1 4.4971 1.3252 -0.0003 29 1 5.1702 -1.6507 1.0207 30 1 5.6064 -1.0343 -0.5912 31 1 4.5793 -2.4800 -0.4392 32 1 2.7035 -2.8820 2.9819 33 1 2.0223 -1.4041 2.2536 34 1 -0.2462 -2.0995 2.7810 35 1 0.7191 -2.3181 4.2641 36 1 -1.3483 -2.4289 6.1610 37 1 -0.7551 -4.3834 1.4133 38 1 -0.0697 -5.8582 2.1441 39 1 1.2243 -4.9423 0.1332 40 1 2.1895 -5.1610 1.6162 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189869723.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:38 Heat of formation + Delta-G solvation = 45.610257 kcal Electronic energy + Delta-G solvation = -22476.652647 eV Core-core repulsion = 19293.304866 eV Total energy + Delta-G solvation = -3183.347781 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.28990 -39.04860 -36.69890 -33.84618 -33.59831 -31.50751 -30.33611 -29.85924 -28.22575 -26.75113 -25.12016 -23.81824 -22.90259 -21.74999 -20.10580 -19.72124 -18.25254 -17.37591 -16.40495 -16.03875 -15.15160 -15.11171 -14.74059 -14.66336 -13.69738 -13.62086 -13.52813 -13.28938 -13.19327 -13.04094 -12.90307 -12.67193 -12.29205 -11.90685 -11.82666 -11.64070 -11.30051 -11.26884 -10.89370 -10.72111 -10.51382 -10.23197 -10.07367 -9.87745 -9.59628 -8.60612 -8.41820 -8.29137 -7.86391 -6.66705 -5.85861 -3.36557 2.08873 2.48784 2.99697 3.17994 3.32038 3.39912 3.41657 3.58756 4.42273 4.69339 4.82374 5.05905 5.09712 5.30968 5.31772 5.35082 5.44711 5.51747 5.80108 5.86144 5.88402 5.94014 6.02093 6.12396 6.15790 6.20913 6.30232 6.37591 6.42949 6.53914 6.77980 6.90545 7.03411 7.18899 7.23446 7.36065 7.50360 7.70896 7.84870 8.38140 8.46725 9.12376 9.72721 10.31783 11.21402 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023348 B = 0.005246 C = 0.004978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.969241 B = 5336.109467 C = 5623.563553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.117 4.117 3 C -0.199 4.199 4 C -0.004 4.004 5 N -0.426 5.426 6 C 0.072 3.928 7 C -0.027 4.027 8 C 0.584 3.416 9 O -0.549 6.549 10 N -0.584 5.584 11 C 0.082 3.918 12 C 0.162 3.838 13 N -0.592 5.592 14 C -0.256 4.256 15 H 0.066 0.934 16 C 0.006 3.994 17 N -0.903 5.903 18 Si 0.906 3.094 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.289 1.289 22 C 0.132 3.868 23 C 0.094 3.906 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.139 0.861 28 H 0.164 0.836 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.026 0.974 35 H 0.100 0.900 36 H 0.255 0.745 37 H 0.025 0.975 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.939 5.889 -8.379 14.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.124 4.124 3 C -0.223 4.223 4 C -0.136 4.136 5 N -0.101 5.101 6 C -0.070 4.070 7 C -0.140 4.140 8 C 0.370 3.630 9 O -0.427 6.427 10 N -0.315 5.315 11 C -0.042 4.042 12 C 0.036 3.964 13 N -0.314 5.314 14 C -0.386 4.386 15 H 0.084 0.916 16 C -0.193 4.193 17 N -0.547 5.547 18 Si 0.735 3.265 19 H -0.202 1.202 20 H -0.215 1.215 21 H -0.216 1.216 22 C 0.005 3.995 23 C -0.030 4.030 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.085 0.915 27 H 0.157 0.843 28 H 0.181 0.819 29 H 0.095 0.905 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.044 0.956 35 H 0.118 0.882 36 H 0.065 0.935 37 H 0.043 0.957 38 H 0.086 0.914 39 H 0.101 0.899 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 10.053 5.399 -8.765 14.389 hybrid contribution 0.112 -0.222 1.013 1.043 sum 10.165 5.177 -7.752 13.792 Atomic orbital electron populations 1.20202 0.89735 1.02655 1.01584 1.19768 0.95394 0.90911 1.06327 1.20638 0.91699 0.98358 1.11619 1.21760 0.99252 0.82393 1.10221 1.43753 1.04932 1.06212 1.55242 1.22069 0.85982 0.95498 1.03458 1.20036 0.83845 0.93779 1.16360 1.17217 0.78001 0.83937 0.83821 1.90773 1.52880 1.68070 1.30998 1.48107 1.66715 1.10709 1.05974 1.22792 1.02052 0.95933 0.83467 1.21243 0.90151 0.85321 0.99727 1.43966 1.80801 1.06182 1.00486 1.19227 1.36014 0.95480 0.87863 0.91602 1.25208 0.97496 0.97279 0.99308 1.69956 1.41730 1.13514 1.29466 0.86175 0.77382 0.78850 0.84062 1.20211 1.21518 1.21554 1.21302 0.93076 0.97282 0.87882 1.22281 0.99570 0.79740 1.01420 0.91931 0.91812 0.91461 0.84329 0.81885 0.90491 0.89679 0.89921 0.92246 0.90673 0.95625 0.88170 0.93461 0.95698 0.91446 0.89927 0.91794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.30 10.19 36.00 0.37 -0.93 16 2 C -0.12 -1.88 6.01 -104.16 -0.63 -2.50 16 3 C -0.20 -2.67 10.76 -39.98 -0.43 -3.10 16 4 C 0.00 -0.05 11.38 -16.91 -0.19 -0.24 16 5 N -0.43 -5.84 3.16 -120.24 -0.38 -6.22 16 6 C 0.07 0.74 10.99 59.85 0.66 1.39 16 7 C -0.03 -0.46 4.67 -81.98 -0.38 -0.84 16 8 C 0.58 11.13 6.46 -12.85 -0.08 11.05 16 9 O -0.55 -11.86 16.52 5.19 0.09 -11.77 16 10 N -0.58 -11.01 2.94 -173.77 -0.51 -11.53 16 11 C 0.08 1.55 6.51 -3.37 -0.02 1.53 16 12 C 0.16 3.75 5.47 -3.37 -0.02 3.73 16 13 N -0.59 -14.44 2.96 -171.77 -0.51 -14.95 16 14 C -0.26 -6.79 9.57 -15.06 -0.14 -6.93 16 15 H 0.07 1.71 7.85 -52.49 -0.41 1.30 16 16 C 0.01 0.16 5.05 -17.43 -0.09 0.07 16 17 N -0.90 -25.35 11.06 55.49 0.61 -24.74 16 18 Si 0.91 21.03 29.57 -169.99 -5.03 16.00 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 22 C 0.13 2.77 6.67 -3.60 -0.02 2.75 16 23 C 0.09 1.74 6.60 -3.60 -0.02 1.72 16 24 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.06 1.11 7.96 -51.93 -0.41 0.70 16 26 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.14 1.54 8.06 -52.49 -0.42 1.12 16 28 H 0.16 1.36 8.06 -52.49 -0.42 0.93 16 29 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.95 7.67 -51.93 -0.40 0.55 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.07 1.36 6.20 -51.93 -0.32 1.04 16 34 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.10 2.56 6.07 -51.93 -0.31 2.25 16 36 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 37 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 1.34 7.93 -51.93 -0.41 0.93 16 39 H 0.08 1.49 6.99 -51.93 -0.36 1.13 16 40 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 328.09 15.07 4.94 4.94 Total: -1.00 -31.66 328.09 -7.79 -39.45 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -6.00 Total: 1.11 kcal Atomic # 6 Polarization: 8.71 SS G_CDS: -1.01 Total: 7.70 kcal Atomic # 7 Polarization: -56.65 SS G_CDS: -0.79 Total: -57.44 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.09 Total: -11.77 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.03 Total: 16.00 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.66 -7.79 -39.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189869723.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.058 kcal (2) G-P(sol) polarization free energy of solvation -31.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds