Wall clock time and date at job start Mon Mar 30 2020 01:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39835 * 126.45797 * 2 1 4 4 C 1.35454 * 107.86541 * 180.02562 * 3 2 1 5 5 N 1.35532 * 108.86837 * 0.02562 * 4 3 2 6 6 C 1.46509 * 125.67563 * 179.97438 * 5 4 3 7 7 C 1.37653 * 108.64743 * 0.24298 * 5 4 3 8 8 C 1.46672 * 126.23148 * 179.75666 * 7 5 4 9 9 O 1.21697 * 120.00524 * 268.60248 * 8 7 5 10 10 N 1.34783 * 120.00347 * 88.60617 * 8 7 5 11 11 C 1.46964 * 120.59102 * 4.49513 * 10 8 7 12 12 C 1.53804 * 108.40132 * 124.75569 * 11 10 8 13 13 N 1.46969 * 108.57815 * 49.63670 * 12 11 10 14 14 C 1.36939 * 120.59458 * 124.62157 * 13 12 11 15 15 H 1.07990 * 120.00196 * 212.12305 * 14 13 12 16 16 C 1.38818 * 119.99781 * 32.12757 * 14 13 12 17 17 N 1.31618 * 120.00024 * 10.55665 * 16 14 13 18 18 Si 1.86796 * 119.99956 * 190.56189 * 16 14 13 19 19 H 1.48498 * 109.47210 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47368 * 119.99629 * 18 16 14 21 21 H 1.48505 * 109.46878 * 239.99882 * 18 16 14 22 22 C 1.46964 * 118.81278 * 304.64983 * 13 12 11 23 23 C 1.46961 * 120.59970 * 184.77230 * 10 8 7 24 24 H 1.09004 * 109.47265 * 89.97260 * 1 2 3 25 25 H 1.09006 * 109.47562 * 209.97040 * 1 2 3 26 26 H 1.09001 * 109.47626 * 329.97614 * 1 2 3 27 27 H 1.08000 * 126.06592 * 0.04369 * 3 2 1 28 28 H 1.07991 * 125.56393 * 180.02562 * 4 3 2 29 29 H 1.09001 * 109.46724 * 85.09515 * 6 5 4 30 30 H 1.08998 * 109.46834 * 325.09106 * 6 5 4 31 31 H 1.08996 * 109.47244 * 205.09182 * 6 5 4 32 32 H 1.08998 * 109.60950 * 244.54386 * 11 10 8 33 33 H 1.09002 * 109.61076 * 5.04890 * 11 10 8 34 34 H 1.08999 * 109.74824 * 289.85141 * 12 11 10 35 35 H 1.09002 * 109.53785 * 169.30468 * 12 11 10 36 36 H 0.96998 * 120.00287 * 180.02562 * 17 16 14 37 37 H 1.09002 * 109.60860 * 295.47650 * 22 13 12 38 38 H 1.08998 * 109.60737 * 174.96742 * 22 13 12 39 39 H 1.09002 * 109.60763 * 354.95288 * 23 10 8 40 40 H 1.08998 * 109.61044 * 115.45176 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6217 0.6928 -0.0006 5 7 3.6283 -0.6625 -0.0015 6 6 4.8225 -1.5112 -0.0029 7 6 2.3261 -1.1089 -0.0071 8 6 1.8898 -2.5092 -0.0148 9 8 1.6870 -3.0776 -1.0716 10 7 1.7133 -3.1666 1.1485 11 6 1.8586 -2.4667 2.4326 12 6 0.5653 -2.6629 3.2415 13 7 0.2300 -4.0939 3.2487 14 6 0.0517 -4.7620 4.4307 15 1 0.3166 -5.8062 4.5061 16 6 -0.4697 -4.0969 5.5321 17 7 -0.9843 -2.8937 5.3914 18 14 -0.4407 -4.9096 7.2137 19 1 0.1862 -6.2513 7.1044 20 1 0.3443 -4.0714 8.1551 21 1 -1.8300 -5.0525 7.7184 22 6 0.0902 -4.7950 1.9648 23 6 1.3781 -4.5975 1.1557 24 1 -0.3634 0.0005 -1.0277 25 1 -0.3634 -0.8903 0.5134 26 1 -0.3634 0.8898 0.5142 27 1 2.0136 2.1548 0.0007 28 1 4.4971 1.3252 -0.0003 29 1 5.1702 -1.6507 1.0207 30 1 5.6064 -1.0343 -0.5912 31 1 4.5793 -2.4800 -0.4392 32 1 2.7035 -2.8820 2.9819 33 1 2.0223 -1.4041 2.2536 34 1 -0.2462 -2.0995 2.7810 35 1 0.7191 -2.3181 4.2641 36 1 -1.3483 -2.4289 6.1610 37 1 -0.7551 -4.3834 1.4133 38 1 -0.0697 -5.8582 2.1441 39 1 1.2243 -4.9423 0.1332 40 1 2.1895 -5.1610 1.6162 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189869723.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:37 Heat of formation + Delta-G solvation = 26.845901 kcal Electronic energy + Delta-G solvation = -22477.466331 eV Core-core repulsion = 19293.304866 eV Total energy + Delta-G solvation = -3184.161465 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.41835 -40.52832 -38.41631 -35.63970 -34.63034 -33.32041 -32.00975 -31.08716 -29.50583 -28.37511 -26.19795 -25.55007 -24.57073 -23.27258 -21.38955 -21.05703 -19.79337 -18.73650 -17.96866 -17.61765 -16.75474 -16.37686 -16.22409 -15.98317 -15.48051 -15.27983 -15.08156 -14.86861 -14.55408 -14.18889 -13.97669 -13.84706 -13.65155 -13.39551 -13.16162 -12.88163 -12.83336 -12.74306 -12.52366 -12.44250 -12.23422 -12.05882 -11.97518 -11.69846 -11.16504 -10.62293 -9.93630 -9.43566 -8.99326 -8.63741 -7.88627 -5.43679 0.96388 1.18560 1.48055 1.50153 1.60230 1.83813 1.99449 2.29488 2.50543 3.27656 3.49700 3.57255 3.88479 4.18210 4.18778 4.24127 4.30702 4.34950 4.36392 4.41577 4.52059 4.57230 4.59866 4.72230 4.76255 4.78873 4.84555 5.02600 5.08728 5.15838 5.18487 5.45370 5.48276 5.58713 5.63078 5.94419 6.06853 6.31049 6.37220 6.43793 6.96775 7.10460 7.75574 8.31737 9.16616 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023348 B = 0.005246 C = 0.004978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.969241 B = 5336.109467 C = 5623.563553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.133 4.133 3 C -0.215 4.215 4 C 0.021 3.979 5 N -0.426 5.426 6 C 0.066 3.934 7 C -0.069 4.069 8 C 0.590 3.410 9 O -0.581 6.581 10 N -0.586 5.586 11 C 0.105 3.895 12 C 0.172 3.828 13 N -0.607 5.607 14 C -0.266 4.266 15 H 0.071 0.929 16 C -0.044 4.044 17 N -0.934 5.934 18 Si 0.972 3.028 19 H -0.265 1.265 20 H -0.288 1.288 21 H -0.294 1.294 22 C 0.132 3.868 23 C 0.103 3.897 24 H 0.066 0.934 25 H 0.031 0.969 26 H 0.083 0.917 27 H 0.161 0.839 28 H 0.210 0.790 29 H 0.090 0.910 30 H 0.121 0.879 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.086 0.914 34 H -0.004 1.004 35 H 0.075 0.925 36 H 0.252 0.748 37 H 0.007 0.993 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.324 6.596 -8.384 16.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.141 4.141 3 C -0.238 4.238 4 C -0.113 4.113 5 N -0.101 5.101 6 C -0.075 4.075 7 C -0.182 4.182 8 C 0.378 3.622 9 O -0.461 6.461 10 N -0.317 5.317 11 C -0.019 4.019 12 C 0.046 3.954 13 N -0.331 5.331 14 C -0.396 4.396 15 H 0.088 0.912 16 C -0.240 4.240 17 N -0.580 5.580 18 Si 0.800 3.200 19 H -0.190 1.190 20 H -0.214 1.214 21 H -0.221 1.221 22 C 0.005 3.995 23 C -0.021 4.021 24 H 0.085 0.915 25 H 0.050 0.950 26 H 0.102 0.898 27 H 0.178 0.822 28 H 0.227 0.773 29 H 0.109 0.891 30 H 0.139 0.861 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.105 0.895 34 H 0.015 0.985 35 H 0.093 0.907 36 H 0.062 0.938 37 H 0.025 0.975 38 H 0.097 0.903 39 H 0.106 0.894 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 12.460 6.084 -8.786 16.415 hybrid contribution -0.646 -0.409 0.951 1.220 sum 11.815 5.674 -7.835 15.270 Atomic orbital electron populations 1.20167 0.90290 1.01854 1.01603 1.20045 0.95541 0.92026 1.06485 1.20957 0.91964 0.98673 1.12230 1.22507 1.00310 0.81884 1.06570 1.44025 1.04517 1.07218 1.54361 1.22324 0.85478 0.94763 1.04908 1.19777 0.85879 0.92450 1.20055 1.17525 0.76883 0.84744 0.83042 1.90738 1.54231 1.69186 1.31945 1.48144 1.66766 1.10787 1.06028 1.22438 0.99717 0.96794 0.82949 1.20988 0.91226 0.84561 0.98659 1.44206 1.81149 1.06583 1.01141 1.19551 1.35490 0.95837 0.88719 0.91161 1.25955 0.97500 0.97853 1.02685 1.70121 1.42853 1.14868 1.30134 0.85146 0.76858 0.78349 0.79685 1.18970 1.21416 1.22107 1.21371 0.93902 0.97452 0.86735 1.22155 0.98569 0.80101 1.01250 0.91518 0.94985 0.89789 0.82150 0.77340 0.89140 0.86099 0.91678 0.91195 0.89545 0.98548 0.90656 0.93848 0.97500 0.90339 0.89389 0.90199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.57 10.19 71.23 0.73 -1.84 16 2 C -0.13 -4.17 6.01 -19.57 -0.12 -4.29 16 3 C -0.21 -5.20 10.76 22.01 0.24 -4.97 16 4 C 0.02 0.41 11.38 83.48 0.95 1.37 16 5 N -0.43 -10.55 3.16 -534.31 -1.69 -12.24 16 6 C 0.07 1.15 10.99 127.77 1.40 2.55 16 7 C -0.07 -2.26 4.67 40.35 0.19 -2.07 16 8 C 0.59 22.56 6.46 86.44 0.56 23.12 16 9 O -0.58 -25.40 16.52 -4.34 -0.07 -25.47 16 10 N -0.59 -22.13 2.94 -821.89 -2.42 -24.55 16 11 C 0.11 3.98 6.51 86.56 0.56 4.55 16 12 C 0.17 8.20 5.47 86.56 0.47 8.68 16 13 N -0.61 -30.14 2.96 -697.36 -2.06 -32.21 16 14 C -0.27 -14.15 9.57 84.03 0.80 -13.35 16 15 H 0.07 3.61 7.85 -2.92 -0.02 3.59 16 16 C -0.04 -2.38 5.05 84.86 0.43 -1.95 16 17 N -0.93 -53.73 11.06 21.65 0.24 -53.49 16 18 Si 0.97 43.36 29.57 68.60 2.03 45.39 16 19 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 20 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 21 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 22 C 0.13 5.62 6.67 86.41 0.58 6.20 16 23 C 0.10 3.79 6.60 86.41 0.57 4.36 16 24 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 25 H 0.03 1.17 7.96 -2.38 -0.02 1.15 16 26 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 27 H 0.16 3.06 8.06 -2.91 -0.02 3.04 16 28 H 0.21 2.21 8.06 -2.92 -0.02 2.18 16 29 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.06 1.38 7.67 -2.39 -0.02 1.37 16 32 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 33 H 0.09 3.11 6.20 -2.39 -0.01 3.09 16 34 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 35 H 0.08 3.97 6.07 -2.39 -0.01 3.96 16 36 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 37 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 38 H 0.08 3.12 7.93 -2.39 -0.02 3.10 16 39 H 0.09 3.17 6.99 -2.39 -0.02 3.16 16 40 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 Total: -1.00 -69.81 328.09 4.41 -65.39 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: 1.02 Total: 14.82 kcal Atomic # 6 Polarization: 14.99 SS G_CDS: 7.36 Total: 22.36 kcal Atomic # 7 Polarization: -116.56 SS G_CDS: -5.93 Total: -122.48 kcal Atomic # 8 Polarization: -25.40 SS G_CDS: -0.07 Total: -25.47 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -69.81 4.41 -65.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189869723.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.239 kcal (2) G-P(sol) polarization free energy of solvation -69.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds