Wall clock time and date at job start Mon Mar 30 2020 02:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30445 * 125.98413 * 2 1 4 4 N 1.39935 * 108.91331 * 180.02562 * 3 2 1 5 5 C 1.46501 * 125.75342 * 180.02562 * 4 3 2 6 6 C 1.34290 * 108.49663 * 359.72655 * 4 3 2 7 7 C 1.38109 * 107.40342 * 0.43152 * 6 4 3 8 8 C 1.47351 * 126.42154 * 179.83688 * 7 6 4 9 9 O 1.21634 * 120.00068 * 171.80860 * 8 7 6 10 10 N 1.34773 * 120.00140 * 351.80539 * 8 7 6 11 11 C 1.36980 * 120.00136 * 5.20595 * 10 8 7 12 12 H 1.07993 * 120.00012 * 303.09853 * 11 10 8 13 13 C 1.38981 * 119.99914 * 123.08709 * 11 10 8 14 14 N 1.31411 * 119.99714 * 167.89588 * 13 11 10 15 15 Si 1.86806 * 119.99968 * 347.90458 * 13 11 10 16 16 H 1.48502 * 109.47044 * 89.84037 * 15 13 11 17 17 H 1.48500 * 109.47008 * 209.83816 * 15 13 11 18 18 H 1.48493 * 109.46794 * 329.84139 * 15 13 11 19 19 C 1.46504 * 119.99918 * 185.20885 * 10 8 7 20 20 C 1.54959 * 110.92296 * 304.25237 * 19 10 8 21 21 C 1.54269 * 104.15670 * 156.29757 * 20 19 10 22 22 C 1.53874 * 106.64265 * 336.44734 * 21 20 19 23 23 C 1.54261 * 106.59737 * 359.97317 * 22 21 20 24 24 H 1.08999 * 109.47429 * 269.97715 * 1 2 3 25 25 H 1.09000 * 109.47255 * 29.97572 * 1 2 3 26 26 H 1.08998 * 109.47367 * 149.97359 * 1 2 3 27 27 H 1.09004 * 109.47299 * 89.96960 * 5 4 3 28 28 H 1.08994 * 109.47284 * 209.97243 * 5 4 3 29 29 H 1.08999 * 109.47055 * 329.97540 * 5 4 3 30 30 H 1.08002 * 126.29757 * 180.26727 * 6 4 3 31 31 H 0.97006 * 119.99607 * 180.02562 * 14 13 11 32 32 H 1.09009 * 110.67112 * 180.94759 * 19 10 8 33 33 H 1.09000 * 110.47507 * 37.64420 * 20 19 10 34 34 H 1.08996 * 110.52978 * 274.97330 * 20 19 10 35 35 H 1.09004 * 110.03059 * 217.13785 * 21 20 19 36 36 H 1.09004 * 110.03171 * 95.75805 * 21 20 19 37 37 H 1.08991 * 110.03203 * 119.26072 * 22 21 20 38 38 H 1.09002 * 110.02768 * 240.64449 * 22 21 20 39 39 H 1.09009 * 110.48795 * 142.28770 * 23 22 21 40 40 H 1.09001 * 110.49251 * 264.79918 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2734 1.0555 0.0000 4 7 3.6111 0.6447 -0.0006 5 6 4.7784 1.5300 -0.0003 6 6 3.6445 -0.6977 0.0051 7 6 2.3373 -1.1435 -0.0006 8 6 1.8920 -2.5481 -0.0008 9 8 0.7136 -2.8125 0.1440 10 7 2.7903 -3.5399 -0.1614 11 6 4.1279 -3.2499 -0.2175 12 1 4.5000 -2.5587 -0.9591 13 6 5.0062 -3.8452 0.6802 14 7 6.3030 -3.7604 0.4848 15 14 4.3434 -4.7659 2.1643 16 1 4.1287 -6.1913 1.8071 17 1 5.3204 -4.6767 3.2790 18 1 3.0542 -4.1618 2.5863 19 6 2.3363 -4.9280 -0.2760 20 6 1.4684 -5.3289 0.9436 21 6 0.6028 -6.4952 0.4237 22 6 0.5304 -6.3426 -1.1057 23 6 1.3540 -5.0881 -1.4629 24 1 -0.3634 -0.0004 1.0276 25 1 -0.3634 0.8902 -0.5135 26 1 -0.3634 -0.8897 -0.5142 27 1 5.0678 1.7493 1.0275 28 1 5.6057 1.0406 -0.5141 29 1 4.5301 2.4588 -0.5138 30 1 4.5306 -1.3152 0.0103 31 1 6.9160 -4.1762 1.1112 32 1 3.1855 -5.6030 -0.3836 33 1 0.8386 -4.4951 1.2539 34 1 2.0987 -5.6600 1.7689 35 1 -0.3977 -6.4376 0.8525 36 1 1.0654 -7.4477 0.6824 37 1 0.9585 -7.2205 -1.5892 38 1 -0.5054 -6.2118 -1.4192 39 1 1.9014 -5.2430 -2.3928 40 1 0.7052 -4.2160 -1.5440 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000217563370.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:47 Heat of formation + Delta-G solvation = 49.867578 kcal Electronic energy + Delta-G solvation = -22831.822508 eV Core-core repulsion = 19648.659338 eV Total energy + Delta-G solvation = -3183.163170 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.64679 -39.02556 -36.25008 -34.52610 -33.27420 -31.87951 -29.90409 -28.84243 -28.12294 -27.05245 -25.49351 -24.48166 -21.53458 -20.73248 -19.82899 -19.01771 -18.62584 -17.70349 -16.02345 -15.45764 -15.11677 -15.08640 -14.72925 -14.06219 -13.85295 -13.29965 -13.15833 -12.98961 -12.86301 -12.83088 -12.38738 -12.35355 -11.99157 -11.63259 -11.49092 -11.25202 -11.07644 -11.03844 -10.68339 -10.58381 -10.34168 -10.17830 -10.03201 -9.79401 -9.67491 -9.02724 -8.62350 -8.37381 -7.82698 -7.42429 -6.53666 -4.37327 2.44705 2.91368 3.03072 3.11544 3.22187 3.33420 4.11191 4.47756 4.49305 4.83001 4.98882 5.29333 5.31090 5.43771 5.44861 5.51438 5.64920 5.67194 5.99423 6.04574 6.08251 6.17578 6.19116 6.21395 6.22925 6.31124 6.41056 6.46540 6.53205 6.59490 6.61359 6.71026 6.87146 6.97868 7.09464 7.27130 7.51038 7.66224 8.05781 8.18222 8.32702 8.92837 9.38844 9.76219 10.51351 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015820 B = 0.008761 C = 0.006352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.539572 B = 3195.115220 C = 4406.800791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.116 3.884 3 N -0.331 5.331 4 N -0.383 5.383 5 C 0.105 3.895 6 C 0.112 3.888 7 C -0.274 4.274 8 C 0.575 3.425 9 O -0.586 6.586 10 N -0.469 5.469 11 C -0.348 4.348 12 H 0.102 0.898 13 C 0.073 3.927 14 N -0.868 5.868 15 Si 0.879 3.121 16 H -0.271 1.271 17 H -0.292 1.292 18 H -0.253 1.253 19 C 0.141 3.859 20 C -0.155 4.155 21 C -0.116 4.116 22 C -0.116 4.116 23 C -0.132 4.132 24 H 0.071 0.929 25 H 0.059 0.941 26 H 0.090 0.910 27 H 0.069 0.931 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.225 0.775 31 H 0.276 0.724 32 H 0.086 0.914 33 H 0.099 0.901 34 H 0.050 0.950 35 H 0.058 0.942 36 H 0.053 0.947 37 H 0.055 0.945 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.815 2.044 -0.827 4.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.052 4.052 3 N -0.154 5.154 4 N -0.163 5.163 5 C -0.037 4.037 6 C -0.036 4.036 7 C -0.288 4.288 8 C 0.367 3.633 9 O -0.471 6.471 10 N -0.189 5.189 11 C -0.476 4.476 12 H 0.119 0.881 13 C -0.136 4.136 14 N -0.502 5.502 15 Si 0.706 3.294 16 H -0.197 1.197 17 H -0.219 1.219 18 H -0.177 1.177 19 C 0.036 3.964 20 C -0.193 4.193 21 C -0.155 4.155 22 C -0.154 4.154 23 C -0.171 4.171 24 H 0.089 0.911 25 H 0.078 0.922 26 H 0.109 0.891 27 H 0.088 0.912 28 H 0.107 0.893 29 H 0.101 0.899 30 H 0.240 0.760 31 H 0.087 0.913 32 H 0.104 0.896 33 H 0.117 0.883 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.000 3.227 -0.706 5.188 hybrid contribution 0.302 -1.430 0.834 1.682 sum -3.698 1.798 0.127 4.113 Atomic orbital electron populations 1.20166 0.86657 1.02903 1.02704 1.22351 0.96654 0.89598 0.96561 1.76888 0.86841 1.23264 1.28361 1.48400 1.05182 1.05740 1.56970 1.21773 0.84660 0.94282 1.02975 1.25323 1.02060 0.82967 0.93224 1.20208 0.91906 0.94427 1.22306 1.17547 0.85040 0.83942 0.76807 1.90524 1.17851 1.84357 1.54340 1.43334 1.06140 1.03480 1.65934 1.18992 0.80565 1.30897 1.17107 0.88120 1.25599 0.94861 0.95806 0.97287 1.69693 1.01751 1.42417 1.36374 0.86897 0.79398 0.80611 0.82525 1.19676 1.21874 1.17709 1.22123 0.95716 0.84754 0.93768 1.23132 0.99007 0.99252 0.97873 1.22001 0.99612 0.98057 0.95781 1.21994 0.99748 0.97862 0.95797 1.22659 0.98170 0.98460 0.97803 0.91050 0.92198 0.89101 0.91227 0.89293 0.89943 0.75975 0.91343 0.89602 0.88286 0.93096 0.92331 0.92832 0.92635 0.92363 0.92457 0.89893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.13 9.85 36.00 0.35 -0.78 16 2 C 0.12 2.38 7.26 -82.01 -0.60 1.78 16 3 N -0.33 -6.61 12.50 33.90 0.42 -6.18 16 4 N -0.38 -7.09 3.98 -67.57 -0.27 -7.36 16 5 C 0.10 1.36 11.44 59.85 0.68 2.04 16 6 C 0.11 2.33 9.78 -16.52 -0.16 2.16 16 7 C -0.27 -6.10 6.04 -105.07 -0.63 -6.73 16 8 C 0.58 13.47 6.90 -12.55 -0.09 13.39 16 9 O -0.59 -13.88 11.13 5.25 0.06 -13.82 16 10 N -0.47 -10.91 1.89 -106.80 -0.20 -11.11 16 11 C -0.35 -8.44 6.57 -14.98 -0.10 -8.54 16 12 H 0.10 2.53 6.16 -52.49 -0.32 2.20 16 13 C 0.07 1.80 5.32 -17.46 -0.09 1.71 16 14 N -0.87 -22.20 13.96 55.50 0.77 -21.42 16 15 Si 0.88 20.27 23.35 -169.99 -3.97 16.30 16 16 H -0.27 -6.10 6.96 56.52 0.39 -5.71 16 17 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 18 H -0.25 -6.04 6.31 56.52 0.36 -5.68 16 19 C 0.14 3.01 2.06 -65.90 -0.14 2.88 16 20 C -0.15 -3.17 4.99 -25.03 -0.12 -3.30 16 21 C -0.12 -1.96 6.80 -25.61 -0.17 -2.13 16 22 C -0.12 -1.86 6.80 -25.62 -0.17 -2.04 16 23 C -0.13 -2.52 6.20 -25.07 -0.16 -2.67 16 24 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 25 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.09 1.64 6.74 -51.93 -0.35 1.29 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.22 4.79 4.73 -52.49 -0.25 4.54 16 31 H 0.28 6.73 8.31 -40.82 -0.34 6.39 16 32 H 0.09 1.90 7.03 -51.92 -0.36 1.53 16 33 H 0.10 2.23 5.65 -51.93 -0.29 1.94 16 34 H 0.05 1.06 4.59 -51.93 -0.24 0.83 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.06 1.03 8.14 -51.92 -0.42 0.61 16 40 H 0.08 1.71 6.17 -51.93 -0.32 1.39 16 LS Contribution 308.00 15.07 4.64 4.64 Total: -1.00 -28.31 308.00 -5.49 -33.81 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -5.55 Total: 7.37 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: -1.39 Total: -2.22 kcal Atomic # 7 Polarization: -46.80 SS G_CDS: 0.73 Total: -46.07 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: 0.06 Total: -13.82 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -3.97 Total: 16.30 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.31 -5.49 -33.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217563370.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.673 kcal (2) G-P(sol) polarization free energy of solvation -28.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds