Wall clock time and date at job start Mon Mar 30 2020 02:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30445 * 125.98413 * 2 1 4 4 N 1.39935 * 108.91331 * 180.02562 * 3 2 1 5 5 C 1.46501 * 125.75342 * 180.02562 * 4 3 2 6 6 C 1.34290 * 108.49663 * 359.72655 * 4 3 2 7 7 C 1.38109 * 107.40342 * 0.43152 * 6 4 3 8 8 C 1.47351 * 126.42154 * 179.83688 * 7 6 4 9 9 O 1.21634 * 120.00068 * 171.80860 * 8 7 6 10 10 N 1.34773 * 120.00140 * 351.80539 * 8 7 6 11 11 C 1.36980 * 120.00136 * 5.20595 * 10 8 7 12 12 H 1.07993 * 120.00012 * 303.09853 * 11 10 8 13 13 C 1.38981 * 119.99914 * 123.08709 * 11 10 8 14 14 N 1.31411 * 119.99714 * 167.89588 * 13 11 10 15 15 Si 1.86806 * 119.99968 * 347.90458 * 13 11 10 16 16 H 1.48502 * 109.47044 * 89.84037 * 15 13 11 17 17 H 1.48500 * 109.47008 * 209.83816 * 15 13 11 18 18 H 1.48493 * 109.46794 * 329.84139 * 15 13 11 19 19 C 1.46504 * 119.99918 * 185.20885 * 10 8 7 20 20 C 1.54959 * 110.92296 * 304.25237 * 19 10 8 21 21 C 1.54269 * 104.15670 * 156.29757 * 20 19 10 22 22 C 1.53874 * 106.64265 * 336.44734 * 21 20 19 23 23 C 1.54261 * 106.59737 * 359.97317 * 22 21 20 24 24 H 1.08999 * 109.47429 * 269.97715 * 1 2 3 25 25 H 1.09000 * 109.47255 * 29.97572 * 1 2 3 26 26 H 1.08998 * 109.47367 * 149.97359 * 1 2 3 27 27 H 1.09004 * 109.47299 * 89.96960 * 5 4 3 28 28 H 1.08994 * 109.47284 * 209.97243 * 5 4 3 29 29 H 1.08999 * 109.47055 * 329.97540 * 5 4 3 30 30 H 1.08002 * 126.29757 * 180.26727 * 6 4 3 31 31 H 0.97006 * 119.99607 * 180.02562 * 14 13 11 32 32 H 1.09009 * 110.67112 * 180.94759 * 19 10 8 33 33 H 1.09000 * 110.47507 * 37.64420 * 20 19 10 34 34 H 1.08996 * 110.52978 * 274.97330 * 20 19 10 35 35 H 1.09004 * 110.03059 * 217.13785 * 21 20 19 36 36 H 1.09004 * 110.03171 * 95.75805 * 21 20 19 37 37 H 1.08991 * 110.03203 * 119.26072 * 22 21 20 38 38 H 1.09002 * 110.02768 * 240.64449 * 22 21 20 39 39 H 1.09009 * 110.48795 * 142.28770 * 23 22 21 40 40 H 1.09001 * 110.49251 * 264.79918 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2734 1.0555 0.0000 4 7 3.6111 0.6447 -0.0006 5 6 4.7784 1.5300 -0.0003 6 6 3.6445 -0.6977 0.0051 7 6 2.3373 -1.1435 -0.0006 8 6 1.8920 -2.5481 -0.0008 9 8 0.7136 -2.8125 0.1440 10 7 2.7903 -3.5399 -0.1614 11 6 4.1279 -3.2499 -0.2175 12 1 4.5000 -2.5587 -0.9591 13 6 5.0062 -3.8452 0.6802 14 7 6.3030 -3.7604 0.4848 15 14 4.3434 -4.7659 2.1643 16 1 4.1287 -6.1913 1.8071 17 1 5.3204 -4.6767 3.2790 18 1 3.0542 -4.1618 2.5863 19 6 2.3363 -4.9280 -0.2760 20 6 1.4684 -5.3289 0.9436 21 6 0.6028 -6.4952 0.4237 22 6 0.5304 -6.3426 -1.1057 23 6 1.3540 -5.0881 -1.4629 24 1 -0.3634 -0.0004 1.0276 25 1 -0.3634 0.8902 -0.5135 26 1 -0.3634 -0.8897 -0.5142 27 1 5.0678 1.7493 1.0275 28 1 5.6057 1.0406 -0.5141 29 1 4.5301 2.4588 -0.5138 30 1 4.5306 -1.3152 0.0103 31 1 6.9160 -4.1762 1.1112 32 1 3.1855 -5.6030 -0.3836 33 1 0.8386 -4.4951 1.2539 34 1 2.0987 -5.6600 1.7689 35 1 -0.3977 -6.4376 0.8525 36 1 1.0654 -7.4477 0.6824 37 1 0.9585 -7.2205 -1.5892 38 1 -0.5054 -6.2118 -1.4192 39 1 1.9014 -5.2430 -2.3928 40 1 0.7052 -4.2160 -1.5440 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000217563370.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:47 Heat of formation + Delta-G solvation = 33.315892 kcal Electronic energy + Delta-G solvation = -22832.540243 eV Core-core repulsion = 19648.659338 eV Total energy + Delta-G solvation = -3183.880905 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.23146 -40.70300 -37.85026 -36.30862 -34.70361 -33.75859 -31.45205 -30.20158 -29.61876 -28.60059 -27.15274 -26.06584 -23.15709 -22.35854 -21.23042 -20.60568 -20.41143 -19.35557 -17.77315 -16.98030 -16.78034 -16.56914 -16.24855 -15.84856 -15.53048 -14.86380 -14.71164 -14.46325 -14.35859 -14.29362 -14.08547 -13.82789 -13.27822 -13.12953 -12.92539 -12.89425 -12.79231 -12.66609 -12.33162 -12.01887 -11.98836 -11.78054 -11.61649 -11.46303 -11.15570 -10.91312 -10.16867 -10.10831 -9.49140 -9.19302 -8.46585 -6.30153 0.82318 1.20765 1.29240 1.36477 1.45777 1.66679 2.21832 2.66619 2.78092 3.00869 3.61746 3.82374 3.84528 4.03005 4.10985 4.33123 4.44529 4.47521 4.54903 4.59001 4.62624 4.68357 4.71867 4.73717 4.83423 4.89638 4.95401 4.98070 5.08228 5.12188 5.17259 5.20730 5.34905 5.41106 5.55590 5.67906 5.75387 6.10847 6.15108 6.37072 6.75365 7.01185 7.54948 7.93366 8.60730 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015820 B = 0.008761 C = 0.006352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.539572 B = 3195.115220 C = 4406.800791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.106 3.894 3 N -0.334 5.334 4 N -0.376 5.376 5 C 0.092 3.908 6 C 0.113 3.887 7 C -0.308 4.308 8 C 0.568 3.432 9 O -0.594 6.594 10 N -0.477 5.477 11 C -0.338 4.338 12 H 0.088 0.912 13 C 0.049 3.951 14 N -0.893 5.893 15 Si 0.915 3.085 16 H -0.261 1.261 17 H -0.291 1.291 18 H -0.270 1.270 19 C 0.130 3.870 20 C -0.155 4.155 21 C -0.112 4.112 22 C -0.109 4.109 23 C -0.128 4.128 24 H 0.079 0.921 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.105 0.895 29 H 0.103 0.897 30 H 0.215 0.785 31 H 0.279 0.721 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.042 0.958 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.062 0.938 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.404 1.874 -0.953 4.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.062 4.062 3 N -0.157 5.157 4 N -0.155 5.155 5 C -0.047 4.047 6 C -0.038 4.038 7 C -0.322 4.322 8 C 0.360 3.640 9 O -0.480 6.480 10 N -0.198 5.198 11 C -0.466 4.466 12 H 0.105 0.895 13 C -0.157 4.157 14 N -0.529 5.529 15 Si 0.743 3.257 16 H -0.186 1.186 17 H -0.218 1.218 18 H -0.195 1.195 19 C 0.026 3.974 20 C -0.193 4.193 21 C -0.150 4.150 22 C -0.147 4.147 23 C -0.166 4.166 24 H 0.098 0.902 25 H 0.103 0.897 26 H 0.097 0.903 27 H 0.106 0.894 28 H 0.123 0.877 29 H 0.122 0.878 30 H 0.231 0.769 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.060 0.940 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.081 0.919 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.580 3.068 -0.837 5.576 hybrid contribution 0.521 -1.259 0.851 1.606 sum -4.060 1.809 0.014 4.444 Atomic orbital electron populations 1.20186 0.84816 1.03497 1.03373 1.22767 0.98028 0.88994 0.96369 1.76847 0.87427 1.23077 1.28313 1.48792 1.05995 1.05548 1.55148 1.22232 0.83287 0.94421 1.04774 1.25016 1.01207 0.84136 0.93430 1.20386 0.93095 0.94468 1.24248 1.17789 0.85037 0.84583 0.76609 1.90499 1.18035 1.84706 1.54716 1.43447 1.05720 1.04396 1.66217 1.18893 0.81057 1.30248 1.16407 0.89453 1.25886 0.94913 0.96490 0.98397 1.69725 1.02275 1.43676 1.37222 0.86344 0.78019 0.80441 0.80945 1.18608 1.21835 1.19456 1.22276 0.96052 0.83547 0.95521 1.23063 0.98931 0.99992 0.97286 1.22017 0.99713 0.97117 0.96177 1.21989 1.00295 0.97027 0.95355 1.22592 0.97663 0.99314 0.97071 0.90247 0.89723 0.90289 0.89438 0.87663 0.87843 0.76939 0.91054 0.90452 0.90646 0.93985 0.90946 0.90975 0.90324 0.90759 0.91886 0.91909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.02 9.85 71.23 0.70 -1.32 16 2 C 0.11 4.29 7.26 43.52 0.32 4.60 16 3 N -0.33 -12.93 12.50 -46.66 -0.58 -13.51 16 4 N -0.38 -13.51 3.98 -367.70 -1.46 -14.97 16 5 C 0.09 2.20 11.44 127.77 1.46 3.66 16 6 C 0.11 4.68 9.78 84.29 0.82 5.51 16 7 C -0.31 -13.81 6.04 -20.15 -0.12 -13.93 16 8 C 0.57 27.04 6.90 86.64 0.60 27.63 16 9 O -0.59 -28.54 11.13 -4.14 -0.05 -28.59 16 10 N -0.48 -22.51 1.89 -610.04 -1.15 -23.66 16 11 C -0.34 -16.66 6.57 84.07 0.55 -16.10 16 12 H 0.09 4.50 6.16 -2.91 -0.02 4.48 16 13 C 0.05 2.44 5.32 84.93 0.45 2.90 16 14 N -0.89 -45.85 13.96 21.67 0.30 -45.55 16 15 Si 0.92 41.81 23.35 68.60 1.60 43.41 16 16 H -0.26 -11.37 6.96 99.48 0.69 -10.68 16 17 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 18 H -0.27 -12.96 6.31 99.48 0.63 -12.33 16 19 C 0.13 5.53 2.06 46.31 0.10 5.63 16 20 C -0.15 -6.24 4.99 31.69 0.16 -6.08 16 21 C -0.11 -3.50 6.80 31.32 0.21 -3.28 16 22 C -0.11 -3.20 6.80 31.32 0.21 -2.99 16 23 C -0.13 -4.74 6.20 31.67 0.20 -4.55 16 24 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 25 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 26 H 0.08 2.84 6.74 -2.39 -0.02 2.82 16 27 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 28 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.21 9.34 4.73 -2.91 -0.01 9.32 16 31 H 0.28 13.61 8.31 -92.70 -0.77 12.84 16 32 H 0.08 3.39 7.03 -2.38 -0.02 3.37 16 33 H 0.08 3.41 5.65 -2.39 -0.01 3.40 16 34 H 0.04 1.73 4.59 -2.39 -0.01 1.72 16 35 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 36 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 37 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 40 H 0.06 2.58 6.17 -2.39 -0.01 2.57 16 Total: -1.00 -60.46 308.00 5.28 -55.18 By element: Atomic # 1 Polarization: 25.07 SS G_CDS: 0.96 Total: 26.02 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: 5.66 Total: 1.67 kcal Atomic # 7 Polarization: -94.80 SS G_CDS: -2.89 Total: -97.70 kcal Atomic # 8 Polarization: -28.54 SS G_CDS: -0.05 Total: -28.59 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 1.60 Total: 43.41 kcal Total: -60.46 5.28 -55.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217563370.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.500 kcal (2) G-P(sol) polarization free energy of solvation -60.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds