Wall clock time and date at job start Mon Mar 30 2020 02:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38777 * 119.90287 * 2 1 4 4 N 1.31778 * 120.12010 * 179.97438 * 3 2 1 5 5 C 1.33033 * 119.92338 * 0.02629 * 4 3 2 6 6 C 1.48151 * 120.09348 * 180.02562 * 5 4 3 7 7 O 1.21512 * 120.00398 * 173.80659 * 6 5 4 8 8 N 1.34776 * 119.99675 * 353.53061 * 6 5 4 9 9 C 1.46500 * 120.00334 * 354.95857 * 8 6 5 10 10 C 1.50697 * 109.47522 * 84.75835 * 9 8 6 11 11 H 1.07999 * 119.99697 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00165 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99627 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99913 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47071 * 60.00508 * 14 12 10 16 16 H 1.48508 * 109.46730 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47212 * 300.00053 * 14 12 10 18 18 C 1.46504 * 119.99778 * 174.95012 * 8 6 5 19 19 C 1.52998 * 109.46738 * 83.69698 * 18 8 6 20 20 C 1.53007 * 109.47524 * 64.99907 * 19 18 8 21 21 C 1.53003 * 109.47011 * 184.99723 * 19 18 8 22 22 C 1.39401 * 119.81295 * 0.27100 * 5 4 3 23 23 N 1.32106 * 119.90100 * 179.97438 * 2 1 3 24 24 H 1.09007 * 109.47545 * 89.99546 * 1 2 3 25 25 H 1.08993 * 109.47511 * 210.00042 * 1 2 3 26 26 H 1.09002 * 109.46888 * 329.99720 * 1 2 3 27 27 H 1.07999 * 119.94271 * 0.02562 * 3 2 1 28 28 H 1.08994 * 109.47199 * 204.76154 * 9 8 6 29 29 H 1.09007 * 109.46872 * 324.75820 * 9 8 6 30 30 H 0.97009 * 119.99233 * 180.02562 * 13 12 10 31 31 H 1.09001 * 109.46967 * 203.69152 * 18 8 6 32 32 H 1.08993 * 109.47404 * 323.69272 * 18 8 6 33 33 H 1.09007 * 109.47431 * 304.99860 * 19 18 8 34 34 H 1.08997 * 109.47337 * 180.02562 * 20 19 18 35 35 H 1.09005 * 109.46546 * 300.00237 * 20 19 18 36 36 H 1.08998 * 109.46562 * 59.99586 * 20 19 18 37 37 H 1.09001 * 109.46956 * 60.00535 * 21 19 18 38 38 H 1.09007 * 109.46734 * 179.97438 * 21 19 18 39 39 H 1.08994 * 109.47310 * 300.00018 * 21 19 18 40 40 H 1.08000 * 120.05894 * 179.70987 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1989 1.2030 0.0000 4 7 3.5166 1.2080 0.0005 5 6 4.1846 0.0575 0.0005 6 6 5.6661 0.0588 0.0016 7 8 6.2745 -0.9869 0.1152 8 7 6.3391 1.2192 -0.1288 9 6 5.6100 2.4644 -0.3823 10 6 5.1389 3.0459 0.9257 11 1 5.3608 2.5388 1.8531 12 6 4.4246 4.2251 0.9385 13 7 4.1541 4.8422 -0.1910 14 14 3.8401 4.9455 2.5598 15 1 5.0118 5.2265 3.4277 16 1 3.1001 6.2072 2.3027 17 1 2.9431 3.9755 3.2378 18 6 7.7998 1.2354 -0.0170 19 6 8.4186 0.8617 -1.3654 20 6 8.0797 1.9386 -2.3982 21 6 9.9378 0.7569 -1.2178 22 6 3.4866 -1.1491 -0.0058 23 7 2.1656 -1.1452 0.0005 24 1 -0.3634 0.0001 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6563 2.1369 0.0004 28 1 6.2685 3.1761 -0.8801 29 1 4.7497 2.2584 -1.0192 30 1 3.6518 5.6721 -0.1819 31 1 8.1311 2.2332 0.2708 32 1 8.1143 0.5160 0.7390 33 1 8.0186 -0.0970 -1.6957 34 1 8.5201 1.6722 -3.3589 35 1 6.9973 2.0133 -2.5033 36 1 8.4797 2.8973 -2.0679 37 1 10.1793 -0.0104 -0.4822 38 1 10.3786 0.4902 -2.1785 39 1 10.3379 1.7155 -0.8877 40 1 4.0249 -2.0854 -0.0105 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218125966.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:27 Heat of formation + Delta-G solvation = 15.442736 kcal Electronic energy + Delta-G solvation = -22299.180591 eV Core-core repulsion = 19114.524647 eV Total energy + Delta-G solvation = -3184.655943 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.77678 -38.90639 -36.09759 -34.58947 -33.38997 -32.38803 -32.18753 -28.32302 -27.51601 -26.77360 -25.58493 -24.02354 -23.27005 -22.38632 -20.25230 -19.03999 -17.33377 -16.65678 -16.27699 -15.66825 -15.25642 -14.85857 -14.82870 -14.44777 -14.26540 -13.87389 -13.31973 -12.96290 -12.48143 -12.41097 -12.39506 -12.28098 -12.11175 -12.01852 -11.83007 -11.38717 -11.02379 -10.93024 -10.84225 -10.65355 -10.56649 -10.34919 -10.17474 -9.97479 -9.67353 -9.47675 -8.77140 -8.46397 -8.11581 -7.68241 -6.03827 -4.01167 0.90748 1.63697 3.26705 3.31632 3.32015 3.37934 3.76736 4.32466 4.36547 4.43158 4.73328 4.86926 5.16881 5.26333 5.30577 5.32775 5.44116 5.45281 5.53059 5.62606 5.82844 5.88178 5.95982 6.00089 6.02966 6.06372 6.17401 6.25411 6.34300 6.41308 6.62445 6.73519 6.75750 6.87278 7.44124 7.63667 7.71415 7.87984 8.21297 8.25630 8.33477 8.84628 8.98916 9.56697 11.04193 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.012004 B = 0.008451 C = 0.005555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.989301 B = 3312.575514 C = 5039.568795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.081 3.919 3 C 0.044 3.956 4 N -0.323 5.323 5 C 0.019 3.981 6 C 0.569 3.431 7 O -0.567 6.567 8 N -0.571 5.571 9 C 0.239 3.761 10 C -0.489 4.489 11 H 0.050 0.950 12 C 0.068 3.932 13 N -0.891 5.891 14 Si 0.884 3.116 15 H -0.279 1.279 16 H -0.287 1.287 17 H -0.280 1.280 18 C 0.125 3.875 19 C -0.112 4.112 20 C -0.145 4.145 21 C -0.141 4.141 22 C 0.098 3.902 23 N -0.458 5.458 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.167 0.833 28 H 0.032 0.968 29 H 0.062 0.938 30 H 0.261 0.739 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.045 0.955 35 H 0.061 0.939 36 H 0.054 0.946 37 H 0.053 0.947 38 H 0.051 0.949 39 H 0.054 0.946 40 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.648 -5.771 -2.453 6.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.061 4.061 3 C -0.118 4.118 4 N -0.039 5.039 5 C -0.122 4.122 6 C 0.355 3.645 7 O -0.448 6.448 8 N -0.299 5.299 9 C 0.120 3.880 10 C -0.529 4.529 11 H 0.068 0.932 12 C -0.133 4.133 13 N -0.531 5.531 14 Si 0.712 3.288 15 H -0.205 1.205 16 H -0.213 1.213 17 H -0.206 1.206 18 C 0.002 3.998 19 C -0.131 4.131 20 C -0.202 4.202 21 C -0.199 4.199 22 C -0.062 4.062 23 N -0.174 5.174 24 H 0.098 0.902 25 H 0.094 0.906 26 H 0.097 0.903 27 H 0.184 0.816 28 H 0.050 0.950 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.099 0.901 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -0.376 -6.103 -2.469 6.594 hybrid contribution -0.476 0.694 1.030 1.331 sum -0.852 -5.409 -1.438 5.661 Atomic orbital electron populations 1.20663 0.88222 1.03589 1.03158 1.22569 0.98223 0.90338 0.94932 1.23913 0.91502 0.98579 0.97848 1.69762 1.07177 1.25502 1.01489 1.22268 0.96381 0.90912 1.02614 1.17688 0.85249 0.83954 0.77620 1.90678 1.68811 1.31801 1.53544 1.48239 1.06372 1.09349 1.65944 1.19882 0.91890 0.78708 0.97562 1.21177 1.33356 1.05947 0.92375 0.93197 1.24731 0.96057 0.96804 0.95728 1.69913 1.40314 1.17702 1.25142 0.86802 0.79016 0.78390 0.84601 1.20454 1.21282 1.20571 1.21452 0.80028 1.02120 0.96224 1.21489 0.95384 0.99800 0.96466 1.21860 1.02324 0.98358 0.97640 1.21746 0.95315 1.01540 1.01268 1.23617 0.89993 0.99129 0.93500 1.68346 1.08349 1.29049 1.11624 0.90181 0.90551 0.90279 0.81573 0.95010 0.92031 0.92965 0.90086 0.91367 0.90985 0.93629 0.91979 0.92652 0.92810 0.92974 0.92718 0.81096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.11 10.19 36.01 0.37 -0.75 16 2 C 0.08 1.29 6.79 -82.27 -0.56 0.73 16 3 C 0.04 0.79 10.88 -17.38 -0.19 0.61 16 4 N -0.32 -6.91 4.98 -9.61 -0.05 -6.96 16 5 C 0.02 0.38 6.55 -82.84 -0.54 -0.16 16 6 C 0.57 12.27 7.56 -12.19 -0.09 12.18 16 7 O -0.57 -12.55 15.88 5.35 0.09 -12.47 16 8 N -0.57 -12.12 2.19 -176.06 -0.39 -12.51 16 9 C 0.24 5.62 3.69 -5.20 -0.02 5.61 16 10 C -0.49 -12.53 7.44 -34.44 -0.26 -12.78 16 11 H 0.05 1.34 7.81 -52.49 -0.41 0.93 16 12 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 13 N -0.89 -23.81 13.29 55.43 0.74 -23.08 16 14 Si 0.88 20.49 29.54 -169.99 -5.02 15.47 16 15 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 16 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 C 0.13 2.29 4.71 -4.04 -0.02 2.27 16 19 C -0.11 -1.78 3.07 -90.62 -0.28 -2.06 16 20 C -0.14 -2.27 8.39 37.16 0.31 -1.96 16 21 C -0.14 -1.82 9.19 37.16 0.34 -1.47 16 22 C 0.10 1.79 10.77 -17.00 -0.18 1.60 16 23 N -0.46 -7.94 10.41 -8.94 -0.09 -8.03 16 24 H 0.08 0.79 8.14 -51.92 -0.42 0.37 16 25 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.08 0.77 8.09 -51.93 -0.42 0.35 16 27 H 0.17 2.80 8.06 -52.49 -0.42 2.38 16 28 H 0.03 0.78 6.93 -51.93 -0.36 0.42 16 29 H 0.06 1.55 5.74 -51.93 -0.30 1.25 16 30 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 31 H 0.08 1.46 8.02 -51.93 -0.42 1.05 16 32 H 0.07 1.25 7.70 -51.93 -0.40 0.85 16 33 H 0.07 1.26 7.92 -51.93 -0.41 0.84 16 34 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.06 1.11 6.47 -51.93 -0.34 0.77 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.17 2.84 7.66 -52.49 -0.40 2.44 16 LS Contribution 332.02 15.07 5.00 5.00 Total: -1.00 -28.87 332.02 -6.91 -35.78 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -5.97 Total: 1.31 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: -1.22 Total: 5.48 kcal Atomic # 7 Polarization: -50.78 SS G_CDS: 0.21 Total: -50.57 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: 0.09 Total: -12.47 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.87 -6.91 -35.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218125966.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.220 kcal (2) G-P(sol) polarization free energy of solvation -28.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds