Wall clock time and date at job start Mon Mar 30 2020 02:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38285 * 126.31455 * 2 1 4 4 C 1.46974 * 126.44449 * 359.97438 * 3 2 1 5 5 C 1.35041 * 119.99838 * 136.60474 * 4 3 2 6 6 C 1.41825 * 120.00306 * 350.23467 * 5 4 3 7 7 O 1.21741 * 120.00229 * 353.34056 * 6 5 4 8 8 N 1.34779 * 120.00307 * 173.33254 * 6 5 4 9 9 C 1.46500 * 120.00177 * 180.02562 * 8 6 5 10 10 C 1.53008 * 109.46774 * 180.02562 * 9 8 6 11 11 C 1.53001 * 109.46630 * 180.02562 * 10 9 8 12 12 C 1.50702 * 109.46719 * 179.97438 * 11 10 9 13 13 H 1.08001 * 120.00101 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99959 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99650 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 120.00011 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47297 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.47149 * 120.00009 * 16 14 12 19 19 H 1.48503 * 109.47269 * 240.00033 * 16 14 12 20 20 C 1.41436 * 107.11839 * 179.73282 * 3 2 1 21 21 N 1.30442 * 108.03467 * 0.24281 * 20 3 2 22 22 N 1.34399 * 126.32390 * 180.15102 * 2 1 3 23 23 C 1.46502 * 125.73613 * 0.02562 * 22 2 1 24 24 H 1.09007 * 109.46845 * 90.00145 * 1 2 3 25 25 H 1.08995 * 109.47463 * 209.99554 * 1 2 3 26 26 H 1.08993 * 109.47445 * 330.00278 * 1 2 3 27 27 H 1.07994 * 119.99429 * 316.60111 * 4 3 2 28 28 H 1.08005 * 119.99752 * 170.23843 * 5 4 3 29 29 H 0.97008 * 119.99389 * 0.02562 * 8 6 5 30 30 H 1.08995 * 109.46903 * 300.00166 * 9 8 6 31 31 H 1.08999 * 109.46849 * 60.00453 * 9 8 6 32 32 H 1.09002 * 109.46926 * 300.00149 * 10 9 8 33 33 H 1.08994 * 109.47244 * 60.00022 * 10 9 8 34 34 H 1.08995 * 109.46849 * 299.99831 * 11 10 9 35 35 H 1.08999 * 109.47047 * 60.00206 * 11 10 9 36 36 H 0.97000 * 119.99524 * 179.97438 * 15 14 12 37 37 H 1.07997 * 125.98775 * 180.25874 * 20 3 2 38 38 H 1.09000 * 109.47079 * 270.32097 * 23 22 2 39 39 H 1.09000 * 109.47098 * 30.32464 * 23 22 2 40 40 H 1.09002 * 109.46472 * 150.32089 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3259 1.1143 0.0000 4 6 1.8903 2.5180 -0.0005 5 6 2.5015 3.4149 0.8029 6 6 3.4162 2.9728 1.7925 7 8 3.5600 1.7819 2.0001 8 7 4.1266 3.8712 2.5030 9 6 5.0720 3.4145 3.5248 10 6 5.7411 4.6255 4.1782 11 6 6.7288 4.1485 5.2448 12 6 7.3883 5.3412 5.8879 13 1 7.1286 6.3396 5.5682 14 6 8.3225 5.1580 6.8853 15 7 8.6376 3.9423 7.2757 16 14 9.1394 6.6364 7.6829 17 1 8.6136 7.8828 7.0705 18 1 8.8458 6.6387 9.1387 19 1 10.6079 6.5630 7.4743 20 6 3.6616 0.6492 0.0063 21 7 3.6352 -0.6549 0.0045 22 7 2.3031 -1.0828 -0.0029 23 6 1.8518 -2.4766 -0.0071 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5137 26 1 -0.3634 0.8899 0.5137 27 1 1.0814 2.8320 -0.6435 28 1 2.2936 4.4689 0.6920 29 1 4.0119 4.8202 2.3378 30 1 4.5385 2.8415 4.2831 31 1 5.8318 2.7852 3.0614 32 1 6.2744 5.1989 3.4200 33 1 4.9810 5.2545 4.6415 34 1 6.1957 3.5749 6.0030 35 1 7.4888 3.5197 4.7810 36 1 9.2951 3.8133 7.9771 37 1 4.5482 1.2658 0.0119 38 1 1.7340 -2.8235 1.0195 39 1 0.8961 -2.5475 -0.5265 40 1 2.5896 -3.0957 -0.5175 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255323322.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:17 Heat of formation + Delta-G solvation = 24.360145 kcal Electronic energy + Delta-G solvation = -20527.238979 eV Core-core repulsion = 17342.969724 eV Total energy + Delta-G solvation = -3184.269255 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.14331 -40.59740 -37.03946 -35.26900 -34.83128 -34.10829 -33.06923 -31.93003 -28.92727 -27.64286 -27.38973 -25.42378 -23.70742 -22.28410 -21.97529 -20.79331 -19.91589 -18.53426 -17.96862 -17.25795 -16.63827 -16.56105 -16.49457 -16.23448 -15.52519 -15.27973 -14.80980 -14.51641 -14.16242 -14.12723 -13.88872 -13.71158 -13.52697 -13.46077 -13.26504 -13.10507 -12.77777 -12.70261 -12.54762 -12.33253 -11.68402 -11.64362 -11.51291 -11.22608 -10.92785 -10.57810 -10.50250 -10.14889 -9.79478 -8.69358 -8.20762 -6.32760 0.16572 1.04832 1.40751 1.41362 1.54850 1.73455 2.11805 2.39304 2.54559 2.61190 3.12822 3.68602 3.80670 4.11199 4.14396 4.21832 4.28321 4.36516 4.38471 4.47528 4.55321 4.61044 4.66216 4.77428 4.90256 4.94248 5.03029 5.07097 5.08422 5.15891 5.43042 5.48148 5.58925 5.62977 5.68870 5.75673 5.82612 6.20893 6.24677 6.79308 6.84378 6.86158 7.37011 7.49390 8.91814 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034297 B = 0.002780 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.198370 B =10068.968612 C =10604.253606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.104 3.896 3 C -0.253 4.253 4 C 0.050 3.950 5 C -0.247 4.247 6 C 0.530 3.470 7 O -0.581 6.581 8 N -0.717 5.717 9 C 0.135 3.865 10 C -0.100 4.100 11 C 0.023 3.977 12 C -0.540 4.540 13 H 0.068 0.932 14 C -0.006 4.006 15 N -0.937 5.937 16 Si 0.970 3.030 17 H -0.257 1.257 18 H -0.279 1.279 19 H -0.280 1.280 20 C 0.115 3.885 21 N -0.361 5.361 22 N -0.381 5.381 23 C 0.092 3.908 24 H 0.109 0.891 25 H 0.085 0.915 26 H 0.094 0.906 27 H 0.174 0.826 28 H 0.166 0.834 29 H 0.413 0.587 30 H 0.040 0.960 31 H 0.041 0.959 32 H 0.068 0.932 33 H 0.068 0.932 34 H -0.011 1.011 35 H -0.011 1.011 36 H 0.263 0.737 37 H 0.158 0.842 38 H 0.075 0.925 39 H 0.122 0.878 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.832 -4.652 -19.691 29.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.026 4.026 3 C -0.264 4.264 4 C 0.029 3.971 5 C -0.268 4.268 6 C 0.322 3.678 7 O -0.463 6.463 8 N -0.369 5.369 9 C 0.010 3.990 10 C -0.138 4.138 11 C -0.014 4.014 12 C -0.578 4.578 13 H 0.086 0.914 14 C -0.203 4.203 15 N -0.577 5.577 16 Si 0.794 3.206 17 H -0.180 1.180 18 H -0.205 1.205 19 H -0.205 1.205 20 C -0.071 4.071 21 N -0.182 5.182 22 N -0.162 5.162 23 C -0.048 4.048 24 H 0.127 0.873 25 H 0.104 0.896 26 H 0.113 0.887 27 H 0.191 0.809 28 H 0.183 0.817 29 H 0.250 0.750 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.007 0.993 35 H 0.007 0.993 36 H 0.072 0.928 37 H 0.175 0.825 38 H 0.093 0.907 39 H 0.140 0.860 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -20.944 -6.817 -19.410 29.357 hybrid contribution 0.868 1.297 1.042 1.876 sum -20.076 -5.520 -18.367 27.765 Atomic orbital electron populations 1.20644 0.83572 1.05197 1.05208 1.22229 0.96097 0.86199 0.98094 1.19386 0.91691 0.94601 1.20736 1.22031 0.94270 0.88386 0.92450 1.22073 1.03134 1.02368 0.99222 1.18044 0.81156 0.85660 0.82901 1.90868 1.68107 1.17724 1.69618 1.46033 1.41826 1.10748 1.38317 1.21072 0.91090 0.97039 0.89793 1.21581 0.98172 0.96089 0.97954 1.18947 0.93485 0.95739 0.93263 1.21716 1.22734 0.93876 1.19447 0.91414 1.26078 0.97621 0.98999 0.97629 1.70135 1.33988 1.23026 1.30590 0.85321 0.77974 0.79238 0.78028 1.18048 1.20507 1.20531 1.23610 0.97955 0.91286 0.94247 1.76987 0.98398 1.14225 1.28540 1.48436 1.03216 1.07527 1.57065 1.22143 1.02365 0.76230 1.04067 0.87317 0.89643 0.88710 0.80907 0.81679 0.75003 0.94142 0.94012 0.91380 0.91382 0.99266 0.99271 0.92812 0.82489 0.90672 0.85987 0.89314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.84 9.71 71.23 0.69 -0.15 16 2 C 0.10 2.20 7.02 42.18 0.30 2.50 16 3 C -0.25 -6.42 4.67 -20.19 -0.09 -6.51 16 4 C 0.05 0.88 9.77 23.82 0.23 1.11 16 5 C -0.25 -4.88 9.82 22.42 0.22 -4.66 16 6 C 0.53 15.98 7.11 85.13 0.61 16.59 16 7 O -0.58 -22.72 11.81 -4.48 -0.05 -22.78 16 8 N -0.72 -21.05 5.55 -471.95 -2.62 -23.67 16 9 C 0.13 5.14 5.67 86.38 0.49 5.63 16 10 C -0.10 -4.06 5.27 30.60 0.16 -3.90 16 11 C 0.02 1.27 4.97 29.85 0.15 1.42 16 12 C -0.54 -30.94 9.11 25.60 0.23 -30.71 16 13 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 14 C -0.01 -0.35 5.46 84.65 0.46 0.12 16 15 N -0.94 -58.70 13.29 21.45 0.28 -58.41 16 16 Si 0.97 44.64 29.54 68.60 2.03 46.67 16 17 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 18 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 19 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 20 C 0.12 3.76 8.86 85.69 0.76 4.52 16 21 N -0.36 -12.17 12.49 -56.18 -0.70 -12.87 16 22 N -0.38 -9.48 3.98 -354.00 -1.41 -10.89 16 23 C 0.09 1.31 11.06 127.77 1.41 2.73 16 24 H 0.11 0.48 8.14 -2.38 -0.02 0.46 16 25 H 0.08 0.60 7.72 -2.39 -0.02 0.58 16 26 H 0.09 0.79 7.97 -2.39 -0.02 0.77 16 27 H 0.17 1.40 8.06 -2.91 -0.02 1.37 16 28 H 0.17 1.94 8.06 -2.91 -0.02 1.91 16 29 H 0.41 9.15 8.43 -92.70 -0.78 8.37 16 30 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 33 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 34 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 35 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 36 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 37 H 0.16 5.31 7.55 -2.91 -0.02 5.29 16 38 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.12 0.75 7.65 -2.39 -0.02 0.73 16 40 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -83.60 341.22 3.39 -80.20 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: 0.25 Total: 13.07 kcal Atomic # 6 Polarization: -16.95 SS G_CDS: 5.62 Total: -11.33 kcal Atomic # 7 Polarization: -101.39 SS G_CDS: -4.44 Total: -105.83 kcal Atomic # 8 Polarization: -22.72 SS G_CDS: -0.05 Total: -22.78 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -83.60 3.39 -80.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255323322.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.562 kcal (2) G-P(sol) polarization free energy of solvation -83.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds