Wall clock time and date at job start Mon Mar 30 2020 02:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35356 * 126.38769 * 2 1 4 4 C 1.41501 * 105.50863 * 180.02562 * 3 2 1 5 5 C 1.47711 * 126.52449 * 180.02562 * 4 3 2 6 6 O 1.21574 * 119.99579 * 353.57654 * 5 4 3 7 7 N 1.34769 * 120.00034 * 173.57833 * 5 4 3 8 8 C 1.46931 * 120.63355 * 4.38117 * 7 5 4 9 9 C 1.52758 * 109.00948 * 233.58336 * 8 7 5 10 10 C 1.53044 * 109.38413 * 305.58974 * 9 8 7 11 11 C 1.53043 * 109.53800 * 61.23890 * 10 9 8 12 12 H 1.08991 * 109.49674 * 58.58918 * 11 10 9 13 13 C 1.50696 * 109.51982 * 178.67026 * 11 10 9 14 14 H 1.08002 * 120.00406 * 359.84993 * 13 11 10 15 15 C 1.37879 * 119.99676 * 179.85670 * 13 11 10 16 16 N 1.31510 * 120.00358 * 359.97438 * 15 13 11 17 17 Si 1.86799 * 119.99982 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.47324 * 90.00017 * 17 15 13 19 19 H 1.48496 * 109.47256 * 209.99659 * 17 15 13 20 20 H 1.48500 * 109.47334 * 330.00120 * 17 15 13 21 21 C 1.46927 * 120.62825 * 184.65994 * 7 5 4 22 22 N 1.31809 * 106.95996 * 0.02562 * 4 3 2 23 23 N 1.28476 * 110.07566 * 359.72084 * 22 4 3 24 24 C 1.46498 * 124.88822 * 180.29377 * 23 22 4 25 25 H 1.08998 * 109.46955 * 90.02262 * 1 2 3 26 26 H 1.09001 * 109.46962 * 330.02416 * 1 2 3 27 27 H 1.08996 * 109.47041 * 210.02323 * 1 2 3 28 28 H 1.08005 * 127.24883 * 359.97438 * 3 2 1 29 29 H 1.08995 * 109.58173 * 353.42204 * 8 7 5 30 30 H 1.09006 * 109.58022 * 113.84203 * 8 7 5 31 31 H 1.08993 * 109.56532 * 185.55160 * 9 8 7 32 32 H 1.08999 * 109.35619 * 65.49664 * 9 8 7 33 33 H 1.09001 * 109.45796 * 301.21672 * 10 9 8 34 34 H 1.08998 * 109.45851 * 181.26152 * 10 9 8 35 35 H 0.97000 * 120.00589 * 180.02562 * 16 15 13 36 36 H 1.08995 * 109.58934 * 246.15545 * 21 7 5 37 37 H 1.09004 * 109.58882 * 6.43948 * 21 7 5 38 38 H 1.08992 * 109.46933 * 270.19238 * 24 23 22 39 39 H 1.08998 * 109.46808 * 30.19062 * 24 23 22 40 40 H 1.09002 * 109.47185 * 150.18958 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3100 1.0896 0.0000 4 6 3.6321 0.5853 -0.0006 5 6 4.8766 1.3811 -0.0003 6 8 4.8249 2.5901 -0.1173 7 7 6.0691 0.7669 0.1296 8 6 6.1551 -0.6992 0.1756 9 6 6.9256 -1.1133 1.4279 10 6 8.2810 -0.4029 1.4485 11 6 8.0645 1.1116 1.4912 12 1 7.4826 1.3710 2.3756 13 6 9.3989 1.8097 1.5445 14 1 10.3111 1.2315 1.5500 15 6 9.4552 3.1867 1.5863 16 7 8.3446 3.8909 1.5792 17 14 11.1093 4.0522 1.6530 18 1 11.5826 4.3226 0.2716 19 1 10.9675 5.3349 2.3875 20 1 12.0928 3.1871 2.3527 21 6 7.3074 1.5508 0.2340 22 7 3.5420 -0.7297 -0.0015 23 7 2.3080 -1.0872 0.0044 24 6 1.8376 -2.4746 0.0115 25 1 -0.3633 -0.0004 -1.0277 26 1 -0.3633 0.8902 0.5135 27 1 -0.3633 -0.8897 0.5142 28 1 2.0057 2.1259 -0.0004 29 1 5.1515 -1.1231 0.2088 30 1 6.6784 -1.0624 -0.7090 31 1 7.0805 -2.1922 1.4210 32 1 6.3544 -0.8329 2.3128 33 1 8.8417 -0.6644 0.5511 34 1 8.8411 -0.7147 2.3300 35 1 8.3842 4.8596 1.6083 36 1 7.9266 1.3748 -0.6456 37 1 7.0640 2.6111 0.3032 38 1 1.7205 -2.8237 -1.0143 39 1 2.5640 -3.1018 0.5281 40 1 0.8783 -2.5303 0.5261 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259720441.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:04 Heat of formation + Delta-G solvation = 49.561103 kcal Electronic energy + Delta-G solvation = -22018.559173 eV Core-core repulsion = 18835.382713 eV Total energy + Delta-G solvation = -3183.176460 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.59733 -38.99561 -36.50677 -33.77961 -33.07075 -32.63817 -31.56723 -29.70164 -27.61600 -27.10065 -24.90640 -24.68465 -22.14846 -21.64116 -20.66683 -19.41185 -18.10800 -16.86681 -16.42630 -16.38132 -15.71902 -14.92117 -14.42002 -14.22123 -14.19427 -13.55944 -13.49586 -13.42703 -13.02773 -12.78746 -12.75477 -12.54772 -12.43637 -12.31006 -11.94404 -11.73030 -11.14628 -10.90923 -10.57394 -10.38727 -10.16132 -9.86757 -9.57067 -9.34050 -9.02099 -8.94759 -8.84635 -8.75010 -8.35421 -7.57900 -5.92144 -4.00903 1.80724 2.29697 2.46067 3.36000 3.42924 3.45442 3.84568 4.04740 4.34482 4.49058 4.55817 4.79380 4.87472 4.97524 5.10645 5.27864 5.37750 5.49596 5.57318 5.72036 5.76473 5.77405 5.96876 6.01649 6.22268 6.35989 6.46881 6.63730 6.73541 6.82156 6.95422 7.03158 7.09237 7.28467 7.47143 7.72834 7.97205 8.04415 8.10025 8.42257 8.47536 8.98304 9.05220 9.64268 11.13250 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031484 B = 0.004566 C = 0.004092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.131209 B = 6130.358017 C = 6840.700445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.005 3.995 3 C -0.181 4.181 4 C 0.008 3.992 5 C 0.587 3.413 6 O -0.533 6.533 7 N -0.590 5.590 8 C 0.076 3.924 9 C -0.130 4.130 10 C -0.111 4.111 11 C 0.040 3.960 12 H 0.028 0.972 13 C -0.520 4.520 14 H 0.058 0.942 15 C 0.062 3.938 16 N -0.881 5.881 17 Si 0.892 3.108 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.275 1.275 21 C 0.113 3.887 22 N -0.266 5.266 23 N -0.293 5.293 24 C 0.086 3.914 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.067 0.933 28 H 0.160 0.840 29 H 0.127 0.873 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.048 0.952 34 H 0.049 0.951 35 H 0.263 0.737 36 H 0.042 0.958 37 H 0.122 0.878 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.124 -13.409 -3.349 21.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.119 4.119 3 C -0.209 4.209 4 C -0.152 4.152 5 C 0.371 3.629 6 O -0.408 6.408 7 N -0.321 5.321 8 C -0.049 4.049 9 C -0.168 4.168 10 C -0.149 4.149 11 C 0.021 3.979 12 H 0.046 0.954 13 C -0.559 4.559 14 H 0.076 0.924 15 C -0.140 4.140 16 N -0.518 5.518 17 Si 0.720 3.280 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.200 1.200 21 C -0.007 4.007 22 N -0.100 5.100 23 N -0.081 5.081 24 C -0.054 4.054 25 H 0.094 0.906 26 H 0.103 0.897 27 H 0.086 0.914 28 H 0.178 0.822 29 H 0.144 0.856 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.061 0.939 37 H 0.140 0.860 38 H 0.100 0.900 39 H 0.114 0.886 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -15.607 -13.661 -3.412 21.020 hybrid contribution 0.538 1.016 0.054 1.151 sum -15.069 -12.645 -3.358 19.956 Atomic orbital electron populations 1.20314 0.86948 1.03600 1.03004 1.21340 0.95161 0.86920 1.08520 1.21525 0.90690 0.99522 1.09151 1.22344 0.95752 0.89352 1.07747 1.17043 0.81541 0.86321 0.77946 1.90788 1.86121 1.13122 1.50794 1.48339 1.07133 1.07236 1.69410 1.22480 1.04146 0.80831 0.97411 1.21826 0.98192 0.98835 0.97956 1.21641 0.94405 0.98514 1.00323 1.18966 0.95638 0.89405 0.93889 0.95359 1.21089 0.91918 0.91255 1.51608 0.92382 1.25056 0.96387 0.97694 0.94895 1.69890 1.26068 1.06481 1.49383 0.86593 0.84256 0.79069 0.78070 1.20656 1.21229 1.19976 1.22316 0.81023 0.98977 0.98396 1.73265 1.00306 1.14965 1.21458 1.45570 1.03257 1.07188 1.52052 1.22089 1.01409 0.77811 1.04128 0.90557 0.89686 0.91441 0.82193 0.85642 0.92892 0.92576 0.92589 0.93301 0.93254 0.92663 0.93932 0.86005 0.89979 0.88603 0.89017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.56 10.10 36.01 0.36 -0.19 16 2 C 0.00 0.06 6.92 -82.21 -0.57 -0.51 16 3 C -0.18 -2.84 10.73 -39.37 -0.42 -3.26 16 4 C 0.01 0.15 6.90 -82.76 -0.57 -0.42 16 5 C 0.59 13.47 7.70 -12.39 -0.10 13.38 16 6 O -0.53 -14.06 16.36 5.30 0.09 -13.97 16 7 N -0.59 -13.36 2.98 -174.19 -0.52 -13.88 16 8 C 0.08 1.41 6.29 -3.93 -0.02 1.38 16 9 C -0.13 -2.38 6.06 -26.83 -0.16 -2.54 16 10 C -0.11 -2.38 5.11 -26.69 -0.14 -2.52 16 11 C 0.04 1.05 2.25 -91.65 -0.21 0.84 16 12 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 13 C -0.52 -14.61 8.57 -34.44 -0.29 -14.90 16 14 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 15 C 0.06 1.78 5.30 -17.82 -0.09 1.68 16 16 N -0.88 -26.44 11.39 55.43 0.63 -25.81 16 17 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 21 C 0.11 2.93 5.39 -3.71 -0.02 2.91 16 22 N -0.27 -4.23 8.31 33.42 0.28 -3.95 16 23 N -0.29 -3.55 3.70 -63.86 -0.24 -3.79 16 24 C 0.09 0.56 11.11 59.85 0.66 1.22 16 25 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.33 6.99 -51.93 -0.36 -0.04 16 28 H 0.16 2.38 8.06 -52.48 -0.42 1.96 16 29 H 0.13 2.17 3.71 -117.42 -0.44 1.73 16 30 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 36 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.12 3.62 5.15 -51.93 -0.27 3.36 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.09 0.34 6.95 -51.93 -0.36 -0.02 16 LS Contribution 322.50 15.07 4.86 4.86 Total: -1.00 -34.74 322.50 -7.53 -42.27 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -6.04 Total: 0.44 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: -1.57 Total: -2.93 kcal Atomic # 7 Polarization: -47.59 SS G_CDS: 0.15 Total: -47.43 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: 0.09 Total: -13.97 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -34.74 -7.53 -42.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259720441.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.834 kcal (2) G-P(sol) polarization free energy of solvation -34.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds