Wall clock time and date at job start Mon Mar 30 2020 02:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35365 * 126.38798 * 2 1 4 4 C 1.41504 * 105.50274 * 180.15927 * 3 2 1 5 5 C 1.47711 * 126.51812 * 179.90161 * 4 3 2 6 6 O 1.21575 * 119.99897 * 6.41074 * 5 4 3 7 7 N 1.34779 * 120.00161 * 186.40379 * 5 4 3 8 8 C 1.46921 * 120.63046 * 175.49188 * 7 5 4 9 9 C 1.53194 * 108.89613 * 233.68040 * 8 7 5 10 10 C 1.53044 * 109.30671 * 305.29323 * 9 8 7 11 11 C 1.50702 * 109.45729 * 181.37121 * 10 9 8 12 12 H 1.07999 * 120.00152 * 359.97438 * 11 10 9 13 13 C 1.37884 * 119.99811 * 180.02562 * 11 10 9 14 14 N 1.31511 * 119.99995 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99774 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47459 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.46784 * 119.99511 * 15 13 11 18 18 H 1.48496 * 109.47205 * 239.99432 * 15 13 11 19 19 C 1.53037 * 109.53868 * 61.36570 * 10 9 8 20 20 C 1.47202 * 120.81098 * 355.63460 * 7 5 4 21 21 N 1.31807 * 106.96402 * 359.64217 * 4 3 2 22 22 N 1.28464 * 110.07201 * 0.22272 * 21 4 3 23 23 C 1.46506 * 124.88541 * 179.97438 * 22 21 4 24 24 H 1.09006 * 109.46630 * 270.23680 * 1 2 3 25 25 H 1.08996 * 109.47135 * 30.23211 * 1 2 3 26 26 H 1.08996 * 109.47797 * 150.23699 * 1 2 3 27 27 H 1.07998 * 127.25006 * 0.04816 * 3 2 1 28 28 H 1.08997 * 109.58759 * 113.81852 * 8 7 5 29 29 H 1.09008 * 109.58863 * 353.53365 * 8 7 5 30 30 H 1.09001 * 109.49562 * 65.23848 * 9 8 7 31 31 H 1.08989 * 109.50038 * 185.31418 * 9 8 7 32 32 H 1.08992 * 109.46305 * 301.34133 * 10 9 8 33 33 H 0.97005 * 119.99778 * 180.02562 * 14 13 11 34 34 H 1.09005 * 109.49976 * 58.58553 * 19 10 9 35 35 H 1.08996 * 109.50048 * 178.67754 * 19 10 9 36 36 H 1.08994 * 109.53604 * 6.53718 * 20 7 5 37 37 H 1.08997 * 109.67490 * 246.22642 * 20 7 5 38 38 H 1.09003 * 109.46793 * 90.02613 * 23 22 21 39 39 H 1.08993 * 109.47614 * 210.02854 * 23 22 21 40 40 H 1.08997 * 109.46841 * 330.03247 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3100 1.0897 0.0000 4 6 3.6321 0.5853 -0.0038 5 6 4.8765 1.3810 -0.0073 6 8 4.8253 2.5900 0.1105 7 7 6.0688 0.7669 -0.1409 8 6 7.3070 1.5507 -0.2452 9 6 8.0637 1.1178 -1.5049 10 6 8.2829 -0.3964 -1.4682 11 6 9.0565 -0.8214 -2.6897 12 1 9.3608 -0.0855 -3.4193 13 6 9.3748 -2.1499 -2.8765 14 7 9.0037 -3.0461 -1.9884 15 14 10.3330 -2.6768 -4.3909 16 1 10.6290 -1.4866 -5.2284 17 1 11.6064 -3.3163 -3.9731 18 1 9.5261 -3.6460 -5.1749 19 6 6.9289 -1.1093 -1.4491 20 6 6.1593 -0.7016 -0.1887 21 7 3.5420 -0.7297 0.0021 22 7 2.3080 -1.0871 0.0044 23 6 1.8375 -2.4745 0.0103 24 1 -0.3633 0.0042 1.0277 25 1 -0.3633 0.8879 -0.5174 26 1 -0.3634 -0.8920 -0.5101 27 1 2.0058 2.1260 0.0007 28 1 7.9274 1.3724 0.6331 29 1 7.0638 2.6112 -0.3115 30 1 7.4803 1.3796 -2.3877 31 1 9.0278 1.6246 -1.5424 32 1 8.8450 -0.6604 -0.5725 33 1 9.2280 -3.9807 -2.1196 34 1 6.3562 -0.8265 -2.3324 35 1 7.0856 -2.1879 -1.4467 36 1 5.1566 -1.1278 -0.2189 37 1 6.6848 -1.0658 0.6940 38 1 1.7211 -2.8143 1.0395 39 1 0.8779 -2.5350 -0.5030 40 1 2.5636 -3.1065 -0.5010 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259739142.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:29 Heat of formation + Delta-G solvation = 48.202366 kcal Electronic energy + Delta-G solvation = -21934.576676 eV Core-core repulsion = 18751.341297 eV Total energy + Delta-G solvation = -3183.235379 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.63819 -39.23343 -36.63052 -33.78342 -33.27437 -32.68537 -31.09733 -29.94188 -27.65926 -27.09759 -26.01092 -23.61009 -22.29490 -21.74964 -20.71492 -19.50616 -18.20117 -16.85642 -16.48168 -16.38072 -15.91816 -15.26453 -14.54085 -14.44038 -14.20862 -13.53747 -13.43938 -13.17122 -12.99977 -12.89297 -12.74614 -12.57589 -12.49976 -12.31094 -12.11395 -11.51365 -11.37332 -10.93002 -10.61693 -10.34039 -10.20361 -9.98221 -9.65390 -9.34797 -9.09459 -9.01487 -8.89111 -8.67287 -8.30410 -7.85610 -5.97325 -4.03142 1.75996 2.18841 2.45515 3.29758 3.37902 3.42573 3.58019 3.80894 4.35397 4.44998 4.52811 4.81645 4.89011 4.94010 5.19601 5.27184 5.32372 5.42665 5.55512 5.69189 5.83870 5.93798 6.01452 6.10522 6.23856 6.31096 6.38019 6.57657 6.66411 6.76566 6.94777 7.07006 7.17361 7.28693 7.45226 7.74228 7.95193 8.01199 8.11219 8.17140 8.47635 8.67558 9.00543 9.61245 11.08008 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021642 B = 0.004837 C = 0.004168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.493383 B = 5787.842406 C = 6716.009050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.005 3.995 3 C -0.182 4.182 4 C 0.000 4.000 5 C 0.595 3.405 6 O -0.555 6.555 7 N -0.585 5.585 8 C 0.111 3.889 9 C -0.123 4.123 10 C 0.046 3.954 11 C -0.509 4.509 12 H 0.055 0.945 13 C 0.061 3.939 14 N -0.891 5.891 15 Si 0.889 3.111 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.285 1.285 19 C -0.118 4.118 20 C 0.071 3.929 21 N -0.252 5.252 22 N -0.289 5.289 23 C 0.084 3.916 24 H 0.076 0.924 25 H 0.084 0.916 26 H 0.068 0.932 27 H 0.159 0.841 28 H 0.061 0.939 29 H 0.078 0.922 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.027 0.973 33 H 0.258 0.742 34 H 0.034 0.966 35 H 0.102 0.898 36 H 0.123 0.877 37 H 0.055 0.945 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.073 0.946 5.258 17.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.119 4.119 3 C -0.210 4.210 4 C -0.160 4.160 5 C 0.381 3.619 6 O -0.433 6.433 7 N -0.315 5.315 8 C -0.011 4.011 9 C -0.161 4.161 10 C 0.027 3.973 11 C -0.548 4.548 12 H 0.073 0.927 13 C -0.140 4.140 14 N -0.531 5.531 15 Si 0.717 3.283 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.211 1.211 19 C -0.157 4.157 20 C -0.051 4.051 21 N -0.086 5.086 22 N -0.076 5.076 23 C -0.057 4.057 24 H 0.095 0.905 25 H 0.103 0.897 26 H 0.087 0.913 27 H 0.177 0.823 28 H 0.079 0.921 29 H 0.096 0.904 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.045 0.955 33 H 0.068 0.932 34 H 0.053 0.947 35 H 0.120 0.880 36 H 0.139 0.861 37 H 0.073 0.927 38 H 0.102 0.898 39 H 0.111 0.889 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -16.473 0.276 5.358 17.325 hybrid contribution 0.193 0.082 -0.878 0.903 sum -16.280 0.358 4.480 16.889 Atomic orbital electron populations 1.20317 0.86911 1.03650 1.03035 1.21367 0.95233 0.86917 1.08420 1.21457 0.90553 0.99405 1.09567 1.22018 0.95215 0.89580 1.09177 1.17015 0.81729 0.86076 0.77095 1.90717 1.86608 1.13435 1.52550 1.48170 1.05502 1.08840 1.69025 1.21736 0.84417 0.95657 0.99252 1.22005 0.98363 1.00451 0.95260 1.18677 0.92914 0.88304 0.97372 1.21270 1.34031 0.92779 1.06692 0.92705 1.24958 0.95924 0.96779 0.96336 1.69868 1.46716 1.01618 1.34872 0.86581 0.79793 0.78574 0.83315 1.19843 1.21084 1.21141 1.21939 0.96208 1.04425 0.93086 1.22985 1.04615 0.77343 1.00156 1.73466 1.00289 1.14728 1.20151 1.45642 1.03211 1.07400 1.51340 1.22155 1.01572 0.77642 1.04315 0.90530 0.89734 0.91316 0.82292 0.92093 0.90351 0.93003 0.92108 0.95506 0.93157 0.94696 0.88021 0.86061 0.92667 0.89792 0.88941 0.88199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.10 36.00 0.36 -0.18 16 2 C 0.00 0.06 6.92 -82.21 -0.57 -0.51 16 3 C -0.18 -2.68 10.73 -39.36 -0.42 -3.10 16 4 C 0.00 0.00 6.90 -82.76 -0.57 -0.58 16 5 C 0.59 12.14 7.70 -12.39 -0.10 12.05 16 6 O -0.56 -12.24 16.36 5.30 0.09 -12.15 16 7 N -0.58 -12.00 2.98 -173.71 -0.52 -12.52 16 8 C 0.11 2.22 6.41 -3.71 -0.02 2.20 16 9 C -0.12 -2.67 5.30 -26.61 -0.14 -2.81 16 10 C 0.05 1.15 2.06 -91.73 -0.19 0.96 16 11 C -0.51 -14.04 8.56 -34.44 -0.29 -14.33 16 12 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 13 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 14 N -0.89 -25.08 11.30 55.43 0.63 -24.46 16 15 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 16 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 C -0.12 -2.81 5.15 -26.61 -0.14 -2.95 16 20 C 0.07 1.48 6.33 -3.56 -0.02 1.45 16 21 N -0.25 -4.17 8.32 33.42 0.28 -3.89 16 22 N -0.29 -3.65 3.70 -63.85 -0.24 -3.89 16 23 C 0.08 0.64 11.11 59.85 0.66 1.30 16 24 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.34 7.00 -51.93 -0.36 -0.02 16 27 H 0.16 2.12 8.06 -52.49 -0.42 1.70 16 28 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.08 1.52 7.03 -51.92 -0.37 1.16 16 30 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.06 1.26 8.14 -51.94 -0.42 0.83 16 32 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 34 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.10 2.65 6.03 -51.93 -0.31 2.34 16 36 H 0.12 2.38 3.75 -112.85 -0.42 1.95 16 37 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.09 0.43 6.95 -51.93 -0.36 0.07 16 40 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 322.39 15.07 4.86 4.86 Total: -1.00 -32.94 322.39 -7.47 -40.42 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -6.02 Total: 0.31 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: -1.53 Total: -4.93 kcal Atomic # 7 Polarization: -44.91 SS G_CDS: 0.15 Total: -44.76 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: 0.09 Total: -12.15 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.94 -7.47 -40.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259739142.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.619 kcal (2) G-P(sol) polarization free energy of solvation -32.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds