Wall clock time and date at job start Mon Mar 30 2020 02:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38047 * 126.28880 * 2 1 4 4 C 1.47433 * 126.41287 * 0.02562 * 3 2 1 5 5 O 1.21596 * 120.00237 * 40.96488 * 4 3 2 6 6 N 1.34775 * 119.99632 * 220.96315 * 4 3 2 7 7 C 1.46927 * 120.63157 * 5.33539 * 6 4 3 8 8 C 1.53629 * 108.54170 * 126.36534 * 7 6 4 9 9 C 1.53044 * 109.23810 * 54.85952 * 8 7 6 10 10 C 1.50704 * 109.44779 * 178.49635 * 9 8 7 11 11 H 1.07987 * 119.99925 * 120.05952 * 10 9 8 12 12 C 1.37880 * 119.99766 * 300.06125 * 10 9 8 13 13 N 1.31514 * 119.99935 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 120.00217 * 0.02562 * 12 10 9 15 15 H 1.48502 * 109.47318 * 89.99808 * 14 12 10 16 16 H 1.48503 * 109.47098 * 210.00187 * 14 12 10 17 17 H 1.48503 * 109.47307 * 329.99763 * 14 12 10 18 18 C 1.53035 * 109.53730 * 298.50895 * 9 8 7 19 19 C 1.46925 * 120.63007 * 185.61600 * 6 4 3 20 20 C 1.41288 * 107.16684 * 179.97438 * 3 2 1 21 21 N 1.30440 * 108.02626 * 359.97438 * 20 3 2 22 22 N 1.34255 * 126.29182 * 179.68352 * 2 1 3 23 23 C 1.46498 * 125.75240 * 359.97438 * 22 2 1 24 24 H 1.09004 * 109.47192 * 90.00461 * 1 2 3 25 25 H 1.09001 * 109.47259 * 330.00193 * 1 2 3 26 26 H 1.09000 * 109.47553 * 210.00300 * 1 2 3 27 27 H 1.08994 * 109.59190 * 246.19990 * 7 6 4 28 28 H 1.09006 * 109.58912 * 6.62936 * 7 6 4 29 29 H 1.08995 * 109.63925 * 294.86924 * 8 7 6 30 30 H 1.09002 * 109.43410 * 174.72266 * 8 7 6 31 31 H 1.09003 * 109.45936 * 58.53086 * 9 8 7 32 32 H 0.96998 * 120.00462 * 179.97438 * 13 12 10 33 33 H 1.08994 * 109.50067 * 301.41491 * 18 9 8 34 34 H 1.09004 * 109.52350 * 181.33509 * 18 9 8 35 35 H 1.08994 * 109.58716 * 353.37350 * 19 6 4 36 36 H 1.08999 * 109.58616 * 113.65791 * 19 6 4 37 37 H 1.08007 * 125.98701 * 180.02562 * 20 3 2 38 38 H 1.09003 * 109.47522 * 90.00008 * 23 22 2 39 39 H 1.09008 * 109.46884 * 209.99533 * 23 22 2 40 40 H 1.08999 * 109.47437 * 329.99285 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1127 0.0000 4 6 1.8856 2.5204 0.0005 5 8 0.9459 2.8643 0.6913 6 7 2.5266 3.4260 -0.7647 7 6 3.5867 3.0067 -1.6915 8 6 3.2488 3.5381 -3.0928 9 6 3.0400 5.0526 -3.0210 10 6 2.7446 5.5843 -4.3998 11 1 1.8121 6.0930 -4.5939 12 6 3.6651 5.4213 -5.4133 13 7 3.4075 5.8857 -6.6165 14 14 5.2779 4.5406 -5.0776 15 1 5.1107 3.0872 -5.3324 16 1 6.3328 5.0818 -5.9718 17 1 5.6725 4.7528 -3.6618 18 6 1.8644 5.3636 -2.0919 19 6 2.1827 4.8521 -0.6834 20 6 3.6590 0.6499 0.0006 21 7 3.6340 -0.6543 0.0015 22 7 2.3016 -1.0821 0.0060 23 6 1.8500 -2.4757 0.0142 24 1 -0.3634 -0.0001 -1.0277 25 1 -0.3634 0.8900 0.5138 26 1 -0.3634 -0.8899 0.5139 27 1 4.5421 3.4157 -1.3632 28 1 3.6417 1.9183 -1.7155 29 1 2.3378 3.0621 -3.4553 30 1 4.0713 3.3162 -3.7729 31 1 3.9430 5.5257 -2.6350 32 1 4.0552 5.7714 -7.3294 33 1 0.9664 4.8704 -2.4637 34 1 1.7009 6.4408 -2.0594 35 1 1.3110 4.9818 -0.0420 36 1 3.0250 5.4082 -0.2721 37 1 4.5449 1.2677 0.0012 38 1 1.7376 -2.8274 -1.0114 39 1 2.5850 -3.0927 0.5313 40 1 0.8916 -2.5441 0.5289 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259768540.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:31 Heat of formation + Delta-G solvation = 43.270752 kcal Electronic energy + Delta-G solvation = -22113.793292 eV Core-core repulsion = 18930.344062 eV Total energy + Delta-G solvation = -3183.449230 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.56486 -39.34860 -36.91179 -34.00502 -33.31750 -32.15506 -31.42236 -30.53325 -27.78009 -26.98819 -26.23208 -23.31152 -22.70787 -21.66086 -20.66437 -19.54883 -18.41434 -17.21589 -16.69994 -16.16569 -15.70923 -15.57627 -14.80034 -14.49449 -14.39505 -13.71698 -13.45210 -13.37457 -13.21250 -13.09457 -12.81791 -12.71399 -12.54924 -12.29368 -12.22479 -11.97810 -11.80120 -11.00570 -10.94841 -10.69905 -10.16474 -10.12638 -9.73448 -9.58552 -9.45489 -9.25553 -9.05949 -8.60821 -8.54115 -8.08560 -6.08558 -4.07582 1.53427 2.22023 2.23995 3.20818 3.24190 3.33709 3.37486 3.56857 4.29741 4.38352 4.44155 4.78888 4.80974 4.91690 5.06612 5.14272 5.20543 5.36018 5.41763 5.45601 5.65878 5.68611 5.75792 5.86871 5.90905 5.94752 6.03975 6.24217 6.32395 6.37564 6.68014 6.69599 6.73399 6.80805 6.97601 7.21896 7.47465 7.51181 7.74170 7.82303 8.51393 8.52696 8.96086 9.53711 11.04887 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021920 B = 0.005302 C = 0.004747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.058738 B = 5280.136009 C = 5897.308863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.144 3.856 3 C -0.285 4.285 4 C 0.596 3.404 5 O -0.557 6.557 6 N -0.595 5.595 7 C 0.098 3.902 8 C -0.133 4.133 9 C 0.014 3.986 10 C -0.512 4.512 11 H 0.073 0.927 12 C 0.068 3.932 13 N -0.902 5.902 14 Si 0.885 3.115 15 H -0.279 1.279 16 H -0.297 1.297 17 H -0.264 1.264 18 C -0.112 4.112 19 C 0.110 3.890 20 C 0.084 3.916 21 N -0.301 5.301 22 N -0.367 5.367 23 C 0.098 3.902 24 H 0.085 0.915 25 H 0.104 0.896 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.028 0.972 32 H 0.263 0.737 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.084 0.916 36 H 0.062 0.938 37 H 0.190 0.810 38 H 0.078 0.922 39 H 0.091 0.909 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.183 -14.524 13.677 20.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.013 3.987 3 C -0.300 4.300 4 C 0.384 3.616 5 O -0.436 6.436 6 N -0.327 5.327 7 C -0.024 4.024 8 C -0.171 4.171 9 C -0.005 4.005 10 C -0.550 4.550 11 H 0.092 0.908 12 C -0.133 4.133 13 N -0.540 5.540 14 Si 0.715 3.285 15 H -0.206 1.206 16 H -0.225 1.225 17 H -0.189 1.189 18 C -0.150 4.150 19 C -0.012 4.012 20 C -0.103 4.103 21 N -0.121 5.121 22 N -0.147 5.147 23 C -0.043 4.043 24 H 0.104 0.896 25 H 0.122 0.878 26 H 0.091 0.909 27 H 0.082 0.918 28 H 0.097 0.903 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.046 0.954 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.080 0.920 37 H 0.207 0.793 38 H 0.097 0.903 39 H 0.110 0.890 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.934 -15.536 13.850 20.903 hybrid contribution 0.675 0.119 -0.243 0.727 sum -1.259 -15.417 13.608 20.602 Atomic orbital electron populations 1.20662 0.86370 1.04933 1.04010 1.21394 0.94715 0.86246 0.96384 1.19995 0.93045 0.93745 1.23217 1.17238 0.81652 0.83705 0.79020 1.90692 1.28866 1.80518 1.43553 1.47946 1.37519 1.07697 1.39551 1.22166 0.89627 0.99812 0.90828 1.22433 1.01258 1.00325 0.93090 1.19141 0.94498 0.90713 0.96138 1.21060 1.05163 1.36753 0.92040 0.90849 1.25041 0.98049 0.95247 0.94965 1.69899 1.35990 1.46509 1.01597 0.86881 0.83782 0.79446 0.78354 1.20600 1.22499 1.18883 1.21811 1.00005 1.00445 0.92775 1.21767 1.00841 0.79295 0.99266 1.24050 0.97244 0.91746 0.97218 1.77159 0.95994 1.13212 1.25703 1.48272 1.04058 1.06198 1.56165 1.21920 1.01140 0.77515 1.03759 0.89627 0.87752 0.90922 0.91848 0.90275 0.91730 0.92565 0.95368 0.92691 0.92304 0.91368 0.89756 0.91999 0.79306 0.90333 0.89001 0.89289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.03 9.92 36.01 0.36 -0.67 16 2 C 0.14 1.87 7.00 -81.60 -0.57 1.30 16 3 C -0.29 -4.32 5.17 -105.06 -0.54 -4.86 16 4 C 0.60 10.26 7.42 -12.52 -0.09 10.17 16 5 O -0.56 -10.71 15.13 5.28 0.08 -10.63 16 6 N -0.60 -10.23 2.97 -173.77 -0.52 -10.74 16 7 C 0.10 1.66 5.54 -3.48 -0.02 1.64 16 8 C -0.13 -2.75 4.86 -26.38 -0.13 -2.88 16 9 C 0.01 0.32 1.65 -91.73 -0.15 0.16 16 10 C -0.51 -14.05 9.14 -34.44 -0.31 -14.36 16 11 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 12 C 0.07 1.93 5.45 -17.82 -0.10 1.84 16 13 N -0.90 -27.33 13.96 55.43 0.77 -26.56 16 14 Si 0.88 21.31 24.38 -169.99 -4.14 17.16 16 15 H -0.28 -6.53 6.86 56.52 0.39 -6.14 16 16 H -0.30 -7.26 7.11 56.52 0.40 -6.85 16 17 H -0.26 -5.95 6.53 56.52 0.37 -5.58 16 18 C -0.11 -2.19 5.30 -26.61 -0.14 -2.33 16 19 C 0.11 1.88 6.44 -3.71 -0.02 1.86 16 20 C 0.08 1.17 9.63 -16.98 -0.16 1.01 16 21 N -0.30 -4.20 12.50 30.86 0.39 -3.81 16 22 N -0.37 -4.37 3.98 -63.34 -0.25 -4.62 16 23 C 0.10 0.67 11.24 59.85 0.67 1.34 16 24 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.10 1.26 6.76 -51.93 -0.35 0.91 16 26 H 0.07 0.50 7.04 -51.93 -0.37 0.14 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.08 1.22 4.81 -51.93 -0.25 0.97 16 29 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 30 H 0.06 1.22 3.24 -51.93 -0.17 1.06 16 31 H 0.03 0.64 7.20 -51.93 -0.37 0.27 16 32 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.08 1.43 7.00 -51.93 -0.36 1.07 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.19 2.20 7.41 -52.48 -0.39 1.81 16 38 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.09 0.54 8.14 -51.92 -0.42 0.12 16 40 H 0.09 0.39 7.01 -51.93 -0.36 0.03 16 LS Contribution 314.08 15.07 4.73 4.73 Total: -1.00 -33.63 314.08 -5.76 -39.39 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -5.61 Total: 0.86 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: -1.22 Total: -5.79 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: 0.39 Total: -45.73 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.08 Total: -10.63 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.14 Total: 17.16 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -33.63 -5.76 -39.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259768540.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.664 kcal (2) G-P(sol) polarization free energy of solvation -33.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds