Wall clock time and date at job start Mon Mar 30 2020 02:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38047 * 126.28880 * 2 1 4 4 C 1.47433 * 126.41287 * 0.02562 * 3 2 1 5 5 O 1.21596 * 120.00237 * 40.96488 * 4 3 2 6 6 N 1.34775 * 119.99632 * 220.96315 * 4 3 2 7 7 C 1.46927 * 120.63157 * 5.33539 * 6 4 3 8 8 C 1.53629 * 108.54170 * 126.36534 * 7 6 4 9 9 C 1.53044 * 109.23810 * 54.85952 * 8 7 6 10 10 C 1.50704 * 109.44779 * 178.49635 * 9 8 7 11 11 H 1.07987 * 119.99925 * 120.05952 * 10 9 8 12 12 C 1.37880 * 119.99766 * 300.06125 * 10 9 8 13 13 N 1.31514 * 119.99935 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 120.00217 * 0.02562 * 12 10 9 15 15 H 1.48502 * 109.47318 * 89.99808 * 14 12 10 16 16 H 1.48503 * 109.47098 * 210.00187 * 14 12 10 17 17 H 1.48503 * 109.47307 * 329.99763 * 14 12 10 18 18 C 1.53035 * 109.53730 * 298.50895 * 9 8 7 19 19 C 1.46925 * 120.63007 * 185.61600 * 6 4 3 20 20 C 1.41288 * 107.16684 * 179.97438 * 3 2 1 21 21 N 1.30440 * 108.02626 * 359.97438 * 20 3 2 22 22 N 1.34255 * 126.29182 * 179.68352 * 2 1 3 23 23 C 1.46498 * 125.75240 * 359.97438 * 22 2 1 24 24 H 1.09004 * 109.47192 * 90.00461 * 1 2 3 25 25 H 1.09001 * 109.47259 * 330.00193 * 1 2 3 26 26 H 1.09000 * 109.47553 * 210.00300 * 1 2 3 27 27 H 1.08994 * 109.59190 * 246.19990 * 7 6 4 28 28 H 1.09006 * 109.58912 * 6.62936 * 7 6 4 29 29 H 1.08995 * 109.63925 * 294.86924 * 8 7 6 30 30 H 1.09002 * 109.43410 * 174.72266 * 8 7 6 31 31 H 1.09003 * 109.45936 * 58.53086 * 9 8 7 32 32 H 0.96998 * 120.00462 * 179.97438 * 13 12 10 33 33 H 1.08994 * 109.50067 * 301.41491 * 18 9 8 34 34 H 1.09004 * 109.52350 * 181.33509 * 18 9 8 35 35 H 1.08994 * 109.58716 * 353.37350 * 19 6 4 36 36 H 1.08999 * 109.58616 * 113.65791 * 19 6 4 37 37 H 1.08007 * 125.98701 * 180.02562 * 20 3 2 38 38 H 1.09003 * 109.47522 * 90.00008 * 23 22 2 39 39 H 1.09008 * 109.46884 * 209.99533 * 23 22 2 40 40 H 1.08999 * 109.47437 * 329.99285 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1127 0.0000 4 6 1.8856 2.5204 0.0005 5 8 0.9459 2.8643 0.6913 6 7 2.5266 3.4260 -0.7647 7 6 3.5867 3.0067 -1.6915 8 6 3.2488 3.5381 -3.0928 9 6 3.0400 5.0526 -3.0210 10 6 2.7446 5.5843 -4.3998 11 1 1.8121 6.0930 -4.5939 12 6 3.6651 5.4213 -5.4133 13 7 3.4075 5.8857 -6.6165 14 14 5.2779 4.5406 -5.0776 15 1 5.1107 3.0872 -5.3324 16 1 6.3328 5.0818 -5.9718 17 1 5.6725 4.7528 -3.6618 18 6 1.8644 5.3636 -2.0919 19 6 2.1827 4.8521 -0.6834 20 6 3.6590 0.6499 0.0006 21 7 3.6340 -0.6543 0.0015 22 7 2.3016 -1.0821 0.0060 23 6 1.8500 -2.4757 0.0142 24 1 -0.3634 -0.0001 -1.0277 25 1 -0.3634 0.8900 0.5138 26 1 -0.3634 -0.8899 0.5139 27 1 4.5421 3.4157 -1.3632 28 1 3.6417 1.9183 -1.7155 29 1 2.3378 3.0621 -3.4553 30 1 4.0713 3.3162 -3.7729 31 1 3.9430 5.5257 -2.6350 32 1 4.0552 5.7714 -7.3294 33 1 0.9664 4.8704 -2.4637 34 1 1.7009 6.4408 -2.0594 35 1 1.3110 4.9818 -0.0420 36 1 3.0250 5.4082 -0.2721 37 1 4.5449 1.2677 0.0012 38 1 1.7376 -2.8274 -1.0114 39 1 2.5850 -3.0927 0.5313 40 1 0.8916 -2.5441 0.5289 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259768540.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:31 Heat of formation + Delta-G solvation = 20.047145 kcal Electronic energy + Delta-G solvation = -22114.800343 eV Core-core repulsion = 18930.344062 eV Total energy + Delta-G solvation = -3184.456281 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.55058 -40.68426 -38.42670 -35.38137 -34.62879 -33.41132 -32.95242 -31.96568 -28.94744 -27.84425 -27.70760 -24.84490 -24.20850 -22.95446 -21.78380 -20.91145 -19.68279 -18.85555 -18.32704 -17.24654 -16.82870 -16.70278 -16.39565 -15.94376 -15.41870 -15.09134 -14.95587 -14.79367 -14.36293 -14.23109 -14.06145 -13.85063 -13.63177 -13.48622 -13.41880 -13.26263 -13.02123 -12.77746 -12.26850 -12.08982 -11.94931 -11.78638 -11.47734 -11.15468 -10.99969 -10.83337 -10.64852 -10.34162 -9.69949 -9.42698 -8.27065 -6.31500 0.55832 1.16713 1.33063 1.39317 1.42937 1.50074 1.97341 2.32563 2.35695 3.08302 3.44920 3.59207 3.86525 3.99461 4.05751 4.15959 4.23909 4.29711 4.35650 4.39421 4.47040 4.53338 4.60836 4.62180 4.67401 4.75450 4.85022 4.93476 4.99130 5.03060 5.08267 5.16658 5.36845 5.44844 5.63579 5.69459 5.77062 5.90843 6.33550 6.47966 6.53560 6.75710 7.22444 7.33979 8.90070 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021920 B = 0.005302 C = 0.004747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.058738 B = 5280.136009 C = 5897.308863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.146 3.854 3 C -0.320 4.320 4 C 0.597 3.403 5 O -0.583 6.583 6 N -0.600 5.600 7 C 0.108 3.892 8 C -0.130 4.130 9 C 0.014 3.986 10 C -0.520 4.520 11 H 0.027 0.973 12 C 0.008 3.992 13 N -0.954 5.954 14 Si 0.948 3.052 15 H -0.266 1.266 16 H -0.303 1.303 17 H -0.232 1.232 18 C -0.106 4.106 19 C 0.118 3.882 20 C 0.083 3.917 21 N -0.320 5.320 22 N -0.361 5.361 23 C 0.085 3.915 24 H 0.093 0.907 25 H 0.082 0.918 26 H 0.108 0.892 27 H 0.088 0.912 28 H 0.097 0.903 29 H 0.047 0.953 30 H 0.050 0.950 31 H 0.036 0.964 32 H 0.264 0.736 33 H 0.039 0.961 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.207 0.793 38 H 0.092 0.908 39 H 0.101 0.899 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.926 -17.034 15.688 23.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.013 3.987 3 C -0.334 4.334 4 C 0.387 3.613 5 O -0.465 6.465 6 N -0.331 5.331 7 C -0.014 4.014 8 C -0.168 4.168 9 C -0.005 4.005 10 C -0.558 4.558 11 H 0.046 0.954 12 C -0.189 4.189 13 N -0.595 5.595 14 Si 0.774 3.226 15 H -0.192 1.192 16 H -0.231 1.231 17 H -0.155 1.155 18 C -0.144 4.144 19 C -0.004 4.004 20 C -0.104 4.104 21 N -0.140 5.140 22 N -0.141 5.141 23 C -0.054 4.054 24 H 0.111 0.889 25 H 0.101 0.899 26 H 0.127 0.873 27 H 0.106 0.894 28 H 0.115 0.885 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.058 0.942 34 H 0.086 0.914 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.224 0.776 38 H 0.110 0.890 39 H 0.120 0.880 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -0.681 -18.077 15.890 24.077 hybrid contribution 0.119 0.889 -0.901 1.272 sum -0.562 -17.187 14.989 22.812 Atomic orbital electron populations 1.20720 0.84640 1.05666 1.04686 1.21776 0.95849 0.86186 0.94927 1.19984 0.94276 0.93027 1.26149 1.17531 0.80944 0.84477 0.78338 1.90672 1.30037 1.81110 1.44660 1.47990 1.37746 1.07627 1.39722 1.22127 0.90276 1.00919 0.88082 1.22286 1.00335 0.98513 0.95711 1.19107 0.95702 0.92096 0.93574 1.21399 1.03382 1.36084 0.94898 0.95420 1.25970 1.02303 0.96169 0.94437 1.70070 1.37707 1.48752 1.02977 0.85852 0.78389 0.78529 0.79801 1.19190 1.23063 1.15474 1.21692 0.98154 1.00496 0.94045 1.21664 1.01869 0.79779 0.97093 1.24308 0.97330 0.91909 0.96808 1.77111 0.97386 1.13273 1.26265 1.48656 1.03265 1.07589 1.54574 1.22378 1.02743 0.75054 1.05273 0.88855 0.89875 0.87312 0.89424 0.88513 0.93404 0.93151 0.94597 0.92688 0.94184 0.91360 0.89672 0.89787 0.77634 0.88981 0.88040 0.86476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.77 9.92 71.24 0.71 -1.06 16 2 C 0.15 3.45 7.00 42.14 0.30 3.74 16 3 C -0.32 -9.02 5.17 -20.15 -0.10 -9.13 16 4 C 0.60 19.69 7.42 86.67 0.64 20.33 16 5 O -0.58 -21.99 15.13 -4.02 -0.06 -22.05 16 6 N -0.60 -19.39 2.97 -821.94 -2.44 -21.82 16 7 C 0.11 3.32 5.54 86.51 0.48 3.80 16 8 C -0.13 -5.16 4.86 30.82 0.15 -5.01 16 9 C 0.01 0.62 1.65 -11.51 -0.02 0.60 16 10 C -0.52 -29.33 9.14 25.60 0.23 -29.10 16 11 H 0.03 1.75 7.99 -2.92 -0.02 1.73 16 12 C 0.01 0.44 5.45 84.66 0.46 0.90 16 13 N -0.95 -59.83 13.96 21.45 0.30 -59.53 16 14 Si 0.95 43.22 24.38 68.60 1.67 44.89 16 15 H -0.27 -11.50 6.86 99.48 0.68 -10.82 16 16 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 17 H -0.23 -9.29 6.53 99.48 0.65 -8.64 16 18 C -0.11 -4.12 5.30 30.67 0.16 -3.96 16 19 C 0.12 3.84 6.44 86.36 0.56 4.40 16 20 C 0.08 2.08 9.63 85.65 0.83 2.91 16 21 N -0.32 -8.08 12.50 -56.28 -0.70 -8.78 16 22 N -0.36 -7.52 3.98 -354.30 -1.41 -8.93 16 23 C 0.08 0.84 11.24 127.77 1.44 2.28 16 24 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 25 H 0.08 1.90 6.76 -2.39 -0.02 1.89 16 26 H 0.11 1.10 7.04 -2.39 -0.02 1.08 16 27 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 28 H 0.10 2.68 4.81 -2.38 -0.01 2.67 16 29 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.05 2.06 3.24 -2.39 -0.01 2.05 16 31 H 0.04 1.55 7.20 -2.39 -0.02 1.54 16 32 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 33 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 35 H 0.08 2.79 7.00 -2.39 -0.02 2.78 16 36 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 37 H 0.21 4.13 7.41 -2.91 -0.02 4.11 16 38 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 40 H 0.12 0.51 7.01 -2.39 -0.02 0.49 16 Total: -1.00 -75.35 314.08 4.15 -71.19 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: 0.96 Total: 14.33 kcal Atomic # 6 Polarization: -15.12 SS G_CDS: 5.83 Total: -9.30 kcal Atomic # 7 Polarization: -94.82 SS G_CDS: -4.25 Total: -99.07 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -0.06 Total: -22.05 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 1.67 Total: 44.89 kcal Total: -75.35 4.15 -71.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259768540.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.242 kcal (2) G-P(sol) polarization free energy of solvation -75.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds