Wall clock time and date at job start Mon Mar 30 2020 02:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.30448 * 125.98920 * 2 1 4 4 N 1.39946 * 108.89726 * 179.97438 * 3 2 1 5 5 C 1.46500 * 125.75273 * 179.97438 * 4 3 2 6 6 C 1.34261 * 108.49056 * 359.97438 * 4 3 2 7 7 C 1.38053 * 107.41554 * 359.73080 * 6 4 3 8 8 C 1.47425 * 126.41237 * 180.25637 * 7 6 4 9 9 O 1.21604 * 120.00210 * 220.48617 * 8 7 6 10 10 N 1.34785 * 120.00037 * 40.48471 * 8 7 6 11 11 C 1.46925 * 120.62879 * 5.23863 * 10 8 7 12 12 C 1.53626 * 108.54246 * 126.36522 * 11 10 8 13 13 C 1.53040 * 109.24128 * 54.86023 * 12 11 10 14 14 C 1.53040 * 109.53343 * 298.50976 * 13 12 11 15 15 H 1.09000 * 109.50228 * 301.41033 * 14 13 12 16 16 C 1.50707 * 109.49688 * 181.31987 * 14 13 12 17 17 H 1.08000 * 119.99972 * 0.15795 * 16 14 13 18 18 C 1.37873 * 119.99909 * 180.16546 * 16 14 13 19 19 N 1.31519 * 119.99744 * 179.97438 * 18 16 14 20 20 Si 1.86801 * 120.00482 * 359.97438 * 18 16 14 21 21 H 1.48504 * 109.46893 * 90.00209 * 20 18 16 22 22 H 1.48496 * 109.47483 * 210.00798 * 20 18 16 23 23 H 1.48507 * 109.46946 * 330.00598 * 20 18 16 24 24 C 1.46922 * 120.63063 * 185.51769 * 10 8 7 25 25 H 1.08998 * 109.47013 * 90.02554 * 1 2 3 26 26 H 1.09007 * 109.47283 * 210.02381 * 1 2 3 27 27 H 1.09004 * 109.47519 * 330.02471 * 1 2 3 28 28 H 1.08996 * 109.47002 * 90.02230 * 5 4 3 29 29 H 1.08993 * 109.46971 * 210.02538 * 5 4 3 30 30 H 1.09003 * 109.47169 * 330.02443 * 5 4 3 31 31 H 1.08001 * 126.28830 * 180.02562 * 6 4 3 32 32 H 1.08996 * 109.58940 * 246.20165 * 11 10 8 33 33 H 1.09003 * 109.58765 * 6.62599 * 11 10 8 34 34 H 1.08998 * 109.63647 * 294.86761 * 12 11 10 35 35 H 1.09001 * 109.45797 * 174.73882 * 12 11 10 36 36 H 1.08993 * 109.46052 * 178.49230 * 13 12 11 37 37 H 1.08999 * 109.45091 * 58.52076 * 13 12 11 38 38 H 0.97005 * 119.99706 * 179.97438 * 19 18 16 39 39 H 1.08994 * 109.58616 * 353.37138 * 24 10 8 40 40 H 1.08999 * 109.58762 * 113.80512 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2735 1.0555 0.0000 4 7 3.6111 0.6442 0.0006 5 6 4.7787 1.5290 0.0003 6 6 3.6439 -0.6980 0.0015 7 6 2.3371 -1.1432 0.0077 8 6 1.8914 -2.5485 0.0162 9 8 0.9421 -2.8894 -0.6630 10 7 2.5362 -3.4555 0.7766 11 6 3.6104 -3.0395 1.6887 12 6 3.2868 -3.5638 3.0960 13 6 3.0677 -5.0771 3.0323 14 6 1.8787 -5.3841 2.1191 15 1 0.9884 -4.8839 2.5003 16 6 1.6435 -6.8722 2.0826 17 1 2.2768 -7.5332 2.6556 18 6 0.6199 -7.3898 1.3176 19 7 0.4150 -8.6885 1.2854 20 14 -0.4760 -6.2466 0.3268 21 1 0.1046 -6.0541 -1.0264 22 1 -1.8306 -6.8424 0.2042 23 1 -0.5729 -4.9342 1.0151 24 6 2.1824 -4.8796 0.7048 25 1 -0.3633 -0.0005 -1.0277 26 1 -0.3634 -0.8898 0.5142 27 1 -0.3634 0.8902 0.5135 28 1 5.0683 1.7488 1.0278 29 1 5.6057 1.0390 -0.5134 30 1 4.5308 2.4576 -0.5139 31 1 4.5298 -1.3158 0.0025 32 1 4.5591 -3.4557 1.3499 33 1 3.6725 -1.9514 1.7080 34 1 2.3833 -3.0808 3.4680 35 1 4.1186 -3.3445 3.7653 36 1 2.8642 -5.4570 4.0334 37 1 3.9628 -5.5571 2.6367 38 1 -0.3055 -9.0527 0.7475 39 1 1.3021 -5.0061 0.0748 40 1 3.0171 -5.4429 0.2875 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259772325.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:06 Heat of formation + Delta-G solvation = 44.705081 kcal Electronic energy + Delta-G solvation = -22298.573127 eV Core-core repulsion = 19115.186095 eV Total energy + Delta-G solvation = -3183.387033 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.51106 -39.26391 -36.81650 -34.08052 -33.46243 -31.96050 -30.93337 -30.07613 -29.41626 -26.27427 -25.18376 -24.57331 -22.21818 -21.75775 -20.41623 -19.48645 -18.63513 -17.06830 -16.65303 -16.36143 -15.77105 -15.33322 -14.68021 -14.35394 -14.03060 -13.81645 -13.70816 -13.54771 -13.19506 -12.97127 -12.82538 -12.60349 -12.29957 -12.24185 -12.14719 -12.05917 -11.31653 -11.04250 -10.83994 -10.58070 -10.35535 -10.06815 -9.73779 -9.53597 -9.39809 -9.17842 -9.04850 -8.61778 -8.54648 -7.97923 -6.07249 -4.08969 1.52342 2.22317 2.26987 3.34409 3.42677 3.51172 3.63947 3.66451 4.24361 4.46805 4.52544 4.77487 4.81229 5.05587 5.05969 5.17489 5.21393 5.26326 5.35797 5.52649 5.56262 5.71928 5.79761 5.88316 5.95534 6.04023 6.11970 6.22510 6.42341 6.49239 6.56261 6.66854 6.70911 6.79176 6.94671 7.18182 7.47848 7.52172 7.75595 7.95491 8.49898 8.69102 8.95479 9.54639 11.04597 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024449 B = 0.005811 C = 0.005007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.988545 B = 4817.319580 C = 5590.695638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.126 3.874 3 N -0.304 5.304 4 N -0.368 5.368 5 C 0.100 3.900 6 C 0.092 3.908 7 C -0.272 4.272 8 C 0.584 3.416 9 O -0.542 6.542 10 N -0.604 5.604 11 C 0.105 3.895 12 C -0.135 4.135 13 C -0.100 4.100 14 C 0.005 3.995 15 H 0.031 0.969 16 C -0.516 4.516 17 H 0.077 0.923 18 C 0.073 3.927 19 N -0.897 5.897 20 Si 0.879 3.121 21 H -0.273 1.273 22 H -0.296 1.296 23 H -0.260 1.260 24 C 0.104 3.896 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.183 0.817 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.265 0.735 39 H 0.080 0.920 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.176 19.603 -0.603 22.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.041 4.041 3 N -0.126 5.126 4 N -0.146 5.146 5 C -0.042 4.042 6 C -0.058 4.058 7 C -0.287 4.287 8 C 0.371 3.629 9 O -0.420 6.420 10 N -0.337 5.337 11 C -0.018 4.018 12 C -0.174 4.174 13 C -0.138 4.138 14 C -0.015 4.015 15 H 0.049 0.951 16 C -0.555 4.555 17 H 0.095 0.905 18 C -0.130 4.130 19 N -0.535 5.535 20 Si 0.709 3.291 21 H -0.200 1.200 22 H -0.224 1.224 23 H -0.185 1.185 24 C -0.017 4.017 25 H 0.101 0.899 26 H 0.102 0.898 27 H 0.091 0.909 28 H 0.097 0.903 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.200 0.800 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.098 0.902 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.741 20.637 -1.037 22.844 hybrid contribution -0.332 -0.411 -0.602 0.801 sum 9.409 20.226 -1.639 22.367 Atomic orbital electron populations 1.20235 0.85883 1.03371 1.03680 1.22397 0.97113 0.88816 0.95807 1.77124 0.85992 1.22544 1.26979 1.48242 1.05995 1.04662 1.55745 1.21931 0.83872 0.94651 1.03698 1.23076 0.98892 0.84930 0.98917 1.20355 0.92260 0.94855 1.21263 1.17374 0.82385 0.83514 0.79589 1.90761 1.27779 1.80190 1.43266 1.48281 1.36306 1.08774 1.40303 1.21943 0.90051 0.99523 0.90305 1.22050 1.01252 0.98752 0.95320 1.21437 0.99443 0.92415 1.00463 1.19484 0.94504 0.97254 0.90260 0.95114 1.20957 1.15851 0.89433 1.29218 0.90529 1.25043 0.96873 0.94908 0.96146 1.69899 1.31662 1.11313 1.40609 0.86983 0.79627 0.81137 0.81345 1.19995 1.22388 1.18517 1.22586 1.00862 0.76669 1.01537 0.89871 0.89848 0.90923 0.90349 0.89233 0.89083 0.79959 0.91751 0.90460 0.92007 0.91856 0.92280 0.92557 0.92548 0.90239 0.91573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.01 9.96 36.00 0.36 -0.65 16 2 C 0.13 1.93 7.26 -82.02 -0.60 1.33 16 3 N -0.30 -4.31 12.50 33.89 0.42 -3.89 16 4 N -0.37 -4.09 3.98 -67.60 -0.27 -4.36 16 5 C 0.10 0.57 11.44 59.85 0.68 1.26 16 6 C 0.09 1.08 9.10 -16.56 -0.15 0.93 16 7 C -0.27 -4.31 5.22 -105.06 -0.55 -4.86 16 8 C 0.58 11.44 7.33 -12.52 -0.09 11.35 16 9 O -0.54 -12.76 15.93 5.27 0.08 -12.67 16 10 N -0.60 -11.38 2.97 -173.77 -0.52 -11.90 16 11 C 0.11 1.48 5.50 -3.49 -0.02 1.46 16 12 C -0.14 -2.02 6.10 -26.39 -0.16 -2.18 16 13 C -0.10 -1.87 5.10 -26.69 -0.14 -2.01 16 14 C 0.00 0.11 1.84 -91.65 -0.17 -0.06 16 15 H 0.03 0.77 7.21 -51.93 -0.37 0.40 16 16 C -0.52 -14.37 9.15 -34.44 -0.31 -14.69 16 17 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 18 C 0.07 2.13 5.45 -17.82 -0.10 2.03 16 19 N -0.90 -27.63 13.96 55.43 0.77 -26.86 16 20 Si 0.88 23.51 24.32 -169.99 -4.13 19.37 16 21 H -0.27 -7.38 6.92 56.52 0.39 -6.99 16 22 H -0.30 -7.87 7.11 56.52 0.40 -7.47 16 23 H -0.26 -6.98 6.53 56.52 0.37 -6.61 16 24 C 0.10 2.34 5.11 -3.71 -0.02 2.33 16 25 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.08 1.27 7.79 -51.92 -0.40 0.87 16 27 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.18 1.53 7.32 -52.49 -0.38 1.15 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.08 0.93 4.78 -51.93 -0.25 0.68 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 39 H 0.08 2.03 2.31 -51.93 -0.12 1.91 16 40 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 LS Contribution 318.05 15.07 4.79 4.79 Total: -1.00 -35.75 318.05 -5.88 -41.63 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: -5.78 Total: -2.37 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: -1.26 Total: -3.75 kcal Atomic # 7 Polarization: -47.42 SS G_CDS: 0.41 Total: -47.00 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: 0.08 Total: -12.67 kcal Atomic # 14 Polarization: 23.51 SS G_CDS: -4.13 Total: 19.37 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -35.75 -5.88 -41.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259772325.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.333 kcal (2) G-P(sol) polarization free energy of solvation -35.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds