Wall clock time and date at job start Mon Mar 30 2020 02:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.30448 * 125.98920 * 2 1 4 4 N 1.39946 * 108.89726 * 179.97438 * 3 2 1 5 5 C 1.46500 * 125.75273 * 179.97438 * 4 3 2 6 6 C 1.34261 * 108.49056 * 359.97438 * 4 3 2 7 7 C 1.38053 * 107.41554 * 359.73080 * 6 4 3 8 8 C 1.47425 * 126.41237 * 180.25637 * 7 6 4 9 9 O 1.21604 * 120.00210 * 220.48617 * 8 7 6 10 10 N 1.34785 * 120.00037 * 40.48471 * 8 7 6 11 11 C 1.46925 * 120.62879 * 5.23863 * 10 8 7 12 12 C 1.53626 * 108.54246 * 126.36522 * 11 10 8 13 13 C 1.53040 * 109.24128 * 54.86023 * 12 11 10 14 14 C 1.53040 * 109.53343 * 298.50976 * 13 12 11 15 15 H 1.09000 * 109.50228 * 301.41033 * 14 13 12 16 16 C 1.50707 * 109.49688 * 181.31987 * 14 13 12 17 17 H 1.08000 * 119.99972 * 0.15795 * 16 14 13 18 18 C 1.37873 * 119.99909 * 180.16546 * 16 14 13 19 19 N 1.31519 * 119.99744 * 179.97438 * 18 16 14 20 20 Si 1.86801 * 120.00482 * 359.97438 * 18 16 14 21 21 H 1.48504 * 109.46893 * 90.00209 * 20 18 16 22 22 H 1.48496 * 109.47483 * 210.00798 * 20 18 16 23 23 H 1.48507 * 109.46946 * 330.00598 * 20 18 16 24 24 C 1.46922 * 120.63063 * 185.51769 * 10 8 7 25 25 H 1.08998 * 109.47013 * 90.02554 * 1 2 3 26 26 H 1.09007 * 109.47283 * 210.02381 * 1 2 3 27 27 H 1.09004 * 109.47519 * 330.02471 * 1 2 3 28 28 H 1.08996 * 109.47002 * 90.02230 * 5 4 3 29 29 H 1.08993 * 109.46971 * 210.02538 * 5 4 3 30 30 H 1.09003 * 109.47169 * 330.02443 * 5 4 3 31 31 H 1.08001 * 126.28830 * 180.02562 * 6 4 3 32 32 H 1.08996 * 109.58940 * 246.20165 * 11 10 8 33 33 H 1.09003 * 109.58765 * 6.62599 * 11 10 8 34 34 H 1.08998 * 109.63647 * 294.86761 * 12 11 10 35 35 H 1.09001 * 109.45797 * 174.73882 * 12 11 10 36 36 H 1.08993 * 109.46052 * 178.49230 * 13 12 11 37 37 H 1.08999 * 109.45091 * 58.52076 * 13 12 11 38 38 H 0.97005 * 119.99706 * 179.97438 * 19 18 16 39 39 H 1.08994 * 109.58616 * 353.37138 * 24 10 8 40 40 H 1.08999 * 109.58762 * 113.80512 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2735 1.0555 0.0000 4 7 3.6111 0.6442 0.0006 5 6 4.7787 1.5290 0.0003 6 6 3.6439 -0.6980 0.0015 7 6 2.3371 -1.1432 0.0077 8 6 1.8914 -2.5485 0.0162 9 8 0.9421 -2.8894 -0.6630 10 7 2.5362 -3.4555 0.7766 11 6 3.6104 -3.0395 1.6887 12 6 3.2868 -3.5638 3.0960 13 6 3.0677 -5.0771 3.0323 14 6 1.8787 -5.3841 2.1191 15 1 0.9884 -4.8839 2.5003 16 6 1.6435 -6.8722 2.0826 17 1 2.2768 -7.5332 2.6556 18 6 0.6199 -7.3898 1.3176 19 7 0.4150 -8.6885 1.2854 20 14 -0.4760 -6.2466 0.3268 21 1 0.1046 -6.0541 -1.0264 22 1 -1.8306 -6.8424 0.2042 23 1 -0.5729 -4.9342 1.0151 24 6 2.1824 -4.8796 0.7048 25 1 -0.3633 -0.0005 -1.0277 26 1 -0.3634 -0.8898 0.5142 27 1 -0.3634 0.8902 0.5135 28 1 5.0683 1.7488 1.0278 29 1 5.6057 1.0390 -0.5134 30 1 4.5308 2.4576 -0.5139 31 1 4.5298 -1.3158 0.0025 32 1 4.5591 -3.4557 1.3499 33 1 3.6725 -1.9514 1.7080 34 1 2.3833 -3.0808 3.4680 35 1 4.1186 -3.3445 3.7653 36 1 2.8642 -5.4570 4.0334 37 1 3.9628 -5.5571 2.6367 38 1 -0.3055 -9.0527 0.7475 39 1 1.3021 -5.0061 0.0748 40 1 3.0171 -5.4429 0.2875 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259772325.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:06 Heat of formation + Delta-G solvation = 18.774465 kcal Electronic energy + Delta-G solvation = -22299.697563 eV Core-core repulsion = 19115.186095 eV Total energy + Delta-G solvation = -3184.511469 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.53762 -40.69797 -38.37223 -35.34348 -34.96479 -33.70664 -32.39065 -31.33000 -30.36553 -27.40229 -26.94415 -25.87759 -23.62042 -23.03252 -21.61496 -20.91837 -19.89865 -18.91942 -18.24657 -17.56147 -16.77748 -16.64832 -16.20085 -15.92452 -15.42279 -15.18764 -15.08834 -14.75252 -14.52724 -14.39262 -14.09336 -13.87884 -13.66407 -13.32546 -13.20978 -13.11470 -13.00918 -12.85308 -12.30614 -12.11963 -11.94060 -11.73531 -11.57601 -11.24608 -11.03563 -10.86257 -10.76420 -10.31534 -9.73028 -9.43333 -8.38377 -6.39658 0.56811 1.09023 1.24074 1.30546 1.44864 1.45669 1.98098 2.22038 2.30469 2.99241 3.34424 3.70349 3.84471 4.03876 4.05469 4.15977 4.25749 4.36647 4.45901 4.48129 4.51785 4.55283 4.64815 4.65904 4.73615 4.74799 4.85101 4.88992 4.92785 5.00481 5.16549 5.23637 5.42413 5.42963 5.55508 5.65048 5.73239 5.91748 6.27550 6.47833 6.59228 6.69624 7.23916 7.26423 8.77562 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024449 B = 0.005811 C = 0.005007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.988545 B = 4817.319580 C = 5590.695638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.108 3.892 3 N -0.320 5.320 4 N -0.355 5.355 5 C 0.086 3.914 6 C 0.122 3.878 7 C -0.311 4.311 8 C 0.581 3.419 9 O -0.597 6.597 10 N -0.606 5.606 11 C 0.101 3.899 12 C -0.128 4.128 13 C -0.097 4.097 14 C 0.003 3.997 15 H 0.008 0.992 16 C -0.509 4.509 17 H 0.053 0.947 18 C 0.031 3.969 19 N -0.937 5.937 20 Si 0.935 3.065 21 H -0.282 1.282 22 H -0.295 1.295 23 H -0.269 1.269 24 C 0.110 3.890 25 H 0.081 0.919 26 H 0.059 0.941 27 H 0.092 0.908 28 H 0.099 0.901 29 H 0.123 0.877 30 H 0.094 0.906 31 H 0.226 0.774 32 H 0.098 0.902 33 H 0.106 0.894 34 H 0.048 0.952 35 H 0.108 0.892 36 H 0.054 0.946 37 H 0.065 0.935 38 H 0.267 0.733 39 H 0.047 0.953 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.500 22.575 -0.134 26.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.058 4.058 3 N -0.143 5.143 4 N -0.133 5.133 5 C -0.053 4.053 6 C -0.031 4.031 7 C -0.326 4.326 8 C 0.371 3.629 9 O -0.478 6.478 10 N -0.337 5.337 11 C -0.020 4.020 12 C -0.166 4.166 13 C -0.134 4.134 14 C -0.016 4.016 15 H 0.027 0.973 16 C -0.548 4.548 17 H 0.071 0.929 18 C -0.167 4.167 19 N -0.578 5.578 20 Si 0.765 3.235 21 H -0.209 1.209 22 H -0.222 1.222 23 H -0.195 1.195 24 C -0.012 4.012 25 H 0.100 0.900 26 H 0.078 0.922 27 H 0.111 0.889 28 H 0.118 0.882 29 H 0.142 0.858 30 H 0.113 0.887 31 H 0.242 0.758 32 H 0.116 0.884 33 H 0.124 0.876 34 H 0.067 0.933 35 H 0.127 0.873 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 13.105 23.668 -0.539 27.059 hybrid contribution -1.229 -1.261 -0.696 1.894 sum 11.876 22.407 -1.235 25.389 Atomic orbital electron populations 1.20184 0.86126 1.03122 1.03565 1.22514 0.97581 0.89203 0.96485 1.77080 0.87549 1.22273 1.27422 1.48707 1.06122 1.05242 1.53199 1.22463 0.82636 0.94437 1.05721 1.23528 0.98431 0.85392 0.95730 1.20095 0.94398 0.92577 1.25552 1.17931 0.81463 0.84950 0.78575 1.90718 1.30297 1.81312 1.45515 1.48283 1.37379 1.06944 1.41082 1.22336 0.89614 1.01447 0.88625 1.22014 1.02553 0.95094 0.96919 1.21372 0.97351 0.95889 0.98816 1.19425 0.95992 0.93942 0.92268 0.97339 1.21324 1.14408 0.91800 1.27273 0.92881 1.25573 0.98238 0.95560 0.97364 1.69984 1.32887 1.12570 1.42311 0.86107 0.78343 0.79199 0.79810 1.20855 1.22231 1.19474 1.22099 0.99752 0.79623 0.99771 0.89994 0.92219 0.88902 0.88226 0.85823 0.88681 0.75810 0.88429 0.87636 0.93297 0.87344 0.92766 0.91621 0.92386 0.93524 0.91124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.00 9.96 71.23 0.71 -1.29 16 2 C 0.11 3.21 7.26 43.51 0.32 3.52 16 3 N -0.32 -8.27 12.50 -46.68 -0.58 -8.85 16 4 N -0.35 -6.32 3.98 -367.78 -1.46 -7.78 16 5 C 0.09 0.52 11.44 127.77 1.46 1.99 16 6 C 0.12 2.31 9.10 84.28 0.77 3.07 16 7 C -0.31 -9.23 5.22 -20.15 -0.11 -9.34 16 8 C 0.58 22.47 7.33 86.66 0.64 23.11 16 9 O -0.60 -28.97 15.93 -4.04 -0.06 -29.03 16 10 N -0.61 -21.85 2.97 -821.94 -2.44 -24.28 16 11 C 0.10 2.39 5.50 86.51 0.48 2.87 16 12 C -0.13 -3.31 6.10 30.82 0.19 -3.12 16 13 C -0.10 -3.44 5.10 30.62 0.16 -3.28 16 14 C 0.00 0.16 1.84 -11.46 -0.02 0.14 16 15 H 0.01 0.44 7.21 -2.39 -0.02 0.42 16 16 C -0.51 -29.00 9.15 25.60 0.23 -28.76 16 17 H 0.05 3.22 7.99 -2.91 -0.02 3.19 16 18 C 0.03 1.88 5.45 84.65 0.46 2.34 16 19 N -0.94 -59.37 13.96 21.45 0.30 -59.07 16 20 Si 0.94 51.13 24.32 68.60 1.67 52.80 16 21 H -0.28 -15.59 6.92 99.48 0.69 -14.90 16 22 H -0.29 -15.77 7.11 99.48 0.71 -15.06 16 23 H -0.27 -14.92 6.53 99.48 0.65 -14.27 16 24 C 0.11 4.95 5.11 86.36 0.44 5.39 16 25 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 26 H 0.06 1.92 7.79 -2.38 -0.02 1.90 16 27 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 29 H 0.12 -0.01 8.14 -2.39 -0.02 -0.03 16 30 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.23 2.23 7.32 -2.91 -0.02 2.21 16 32 H 0.10 1.75 8.14 -2.39 -0.02 1.74 16 33 H 0.11 1.96 4.78 -2.39 -0.01 1.94 16 34 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.27 15.99 8.31 -92.70 -0.77 15.22 16 39 H 0.05 2.43 2.31 -2.39 -0.01 2.43 16 40 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 Total: -1.00 -83.29 318.05 4.10 -79.18 By element: Atomic # 1 Polarization: -0.56 SS G_CDS: 0.96 Total: 0.40 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: 5.72 Total: -3.36 kcal Atomic # 7 Polarization: -95.80 SS G_CDS: -4.19 Total: -99.99 kcal Atomic # 8 Polarization: -28.97 SS G_CDS: -0.06 Total: -29.03 kcal Atomic # 14 Polarization: 51.13 SS G_CDS: 1.67 Total: 52.80 kcal Total: -83.29 4.10 -79.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259772325.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.958 kcal (2) G-P(sol) polarization free energy of solvation -83.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds