Wall clock time and date at job start Mon Mar 30 2020 02:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30448 * 125.98774 * 2 1 4 4 N 1.39933 * 108.89603 * 180.25815 * 3 2 1 5 5 C 1.46499 * 125.75275 * 179.73275 * 4 3 2 6 6 C 1.34254 * 108.49242 * 359.75389 * 4 3 2 7 7 C 1.38045 * 107.41638 * 359.97438 * 6 4 3 8 8 C 1.47430 * 126.41037 * 179.97438 * 7 6 4 9 9 O 1.21603 * 119.99551 * 139.83600 * 8 7 6 10 10 N 1.34773 * 120.00344 * 319.82493 * 8 7 6 11 11 C 1.46928 * 120.62875 * 354.50076 * 10 8 7 12 12 C 1.53189 * 108.77494 * 233.60196 * 11 10 8 13 13 C 1.53032 * 109.31761 * 305.36863 * 12 11 10 14 14 C 1.53038 * 109.54080 * 61.35921 * 13 12 11 15 15 H 1.09007 * 109.49604 * 58.62383 * 14 13 12 16 16 C 1.50695 * 109.50012 * 178.68555 * 14 13 12 17 17 H 1.07997 * 120.00295 * 359.94069 * 16 14 13 18 18 C 1.37879 * 119.99945 * 179.66203 * 16 14 13 19 19 N 1.31508 * 120.00250 * 0.27825 * 18 16 14 20 20 Si 1.86806 * 119.99868 * 180.27515 * 18 16 14 21 21 H 1.48502 * 109.47070 * 60.00290 * 20 18 16 22 22 H 1.48505 * 109.47053 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47345 * 300.00191 * 20 18 16 24 24 C 1.46930 * 120.60587 * 174.51734 * 10 8 7 25 25 H 1.08992 * 109.47499 * 270.14222 * 1 2 3 26 26 H 1.08997 * 109.47187 * 30.14595 * 1 2 3 27 27 H 1.09007 * 109.46610 * 150.14479 * 1 2 3 28 28 H 1.09001 * 109.47059 * 270.02404 * 5 4 3 29 29 H 1.09003 * 109.46965 * 30.02617 * 5 4 3 30 30 H 1.08997 * 109.47372 * 150.02519 * 5 4 3 31 31 H 1.08005 * 126.29328 * 179.97438 * 6 4 3 32 32 H 1.09007 * 109.58727 * 113.81925 * 11 10 8 33 33 H 1.08993 * 109.58938 * 353.39424 * 11 10 8 34 34 H 1.09003 * 109.49816 * 185.40913 * 12 11 10 35 35 H 1.09009 * 109.52180 * 65.33617 * 12 11 10 36 36 H 1.09006 * 109.46026 * 301.34000 * 13 12 11 37 37 H 1.09001 * 109.45271 * 181.38055 * 13 12 11 38 38 H 0.96999 * 120.00484 * 180.02562 * 19 18 16 39 39 H 1.08999 * 109.61845 * 6.62326 * 24 10 8 40 40 H 1.09010 * 109.56363 * 246.19393 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0555 0.0000 4 7 3.6111 0.6443 -0.0060 5 6 4.7786 1.5291 -0.0134 6 6 3.6439 -0.6979 -0.0042 7 6 2.3373 -1.1431 0.0035 8 6 1.8917 -2.5485 0.0074 9 8 0.9445 -2.8840 0.6922 10 7 2.5339 -3.4612 -0.7481 11 6 3.6011 -3.0516 -1.6712 12 6 3.2764 -3.5873 -3.0691 13 6 3.0573 -5.0999 -2.9933 14 6 1.8715 -5.3999 -2.0736 15 1 0.9797 -4.9030 -2.4559 16 6 1.6363 -6.8876 -2.0251 17 1 2.2685 -7.5532 -2.5940 18 6 0.6176 -7.3996 -1.2497 19 7 -0.1523 -6.5893 -0.5569 20 14 0.3310 -9.2444 -1.1836 21 1 1.5493 -9.9163 -0.6644 22 1 -0.8151 -9.5353 -0.2851 23 1 0.0312 -9.7481 -2.5480 24 6 2.1794 -4.8847 -0.6642 25 1 -0.3634 0.0026 1.0276 26 1 -0.3633 0.8886 -0.5161 27 1 -0.3633 -0.8914 -0.5116 28 1 5.0628 1.7470 -1.0429 29 1 4.5334 2.4586 0.5004 30 1 5.6085 1.0400 0.4967 31 1 4.5298 -1.3157 -0.0080 32 1 4.5530 -3.4623 -1.3346 33 1 3.6604 -1.9637 -1.7014 34 1 4.1062 -3.3731 -3.7427 35 1 2.3718 -3.1069 -3.4423 36 1 3.9537 -5.5773 -2.5975 37 1 2.8502 -5.4872 -3.9910 38 1 -0.8688 -6.9495 -0.0111 39 1 1.3009 -5.0063 -0.0306 40 1 3.0153 -5.4449 -0.2450 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259772329.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:08 Heat of formation + Delta-G solvation = 14.546536 kcal Electronic energy + Delta-G solvation = -22126.959740 eV Core-core repulsion = 18942.264934 eV Total energy + Delta-G solvation = -3184.694805 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.47339 -40.47705 -38.19025 -35.29006 -34.92297 -33.49753 -31.95463 -31.04807 -30.31365 -27.35226 -26.85300 -25.75171 -23.46614 -23.03732 -21.56954 -20.85150 -19.76720 -18.54994 -17.84024 -17.34053 -16.68567 -16.56089 -16.23746 -15.78077 -15.31780 -14.96313 -14.84753 -14.47355 -14.39538 -14.25455 -14.02425 -13.72052 -13.44923 -13.27083 -13.08456 -12.99660 -12.82634 -12.66513 -12.24771 -12.22855 -11.91858 -11.73515 -11.59154 -11.08328 -10.91547 -10.66359 -10.48314 -10.27055 -9.63177 -9.27082 -8.06835 -6.24851 0.62054 1.15877 1.42807 1.44322 1.49813 1.52801 2.13934 2.42667 2.50039 3.20770 3.40565 3.74066 4.01226 4.08355 4.12390 4.20538 4.39202 4.40904 4.49475 4.57694 4.62151 4.68697 4.75300 4.77608 4.83780 4.89038 4.90168 4.96929 5.11843 5.29009 5.30953 5.39654 5.48229 5.59145 5.71153 5.93541 5.96407 6.05183 6.36764 6.54936 6.77908 6.88513 7.43040 7.46920 8.96090 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027507 B = 0.004866 C = 0.004387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.692075 B = 5752.760050 C = 6380.259674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.107 3.893 3 N -0.320 5.320 4 N -0.356 5.356 5 C 0.087 3.913 6 C 0.118 3.882 7 C -0.308 4.308 8 C 0.577 3.423 9 O -0.592 6.592 10 N -0.605 5.605 11 C 0.102 3.898 12 C -0.127 4.127 13 C -0.104 4.104 14 C 0.038 3.962 15 H -0.019 1.019 16 C -0.537 4.537 17 H 0.063 0.937 18 C 0.010 3.990 19 N -0.915 5.915 20 Si 0.957 3.043 21 H -0.265 1.265 22 H -0.290 1.290 23 H -0.269 1.269 24 C 0.127 3.873 25 H 0.081 0.919 26 H 0.092 0.908 27 H 0.057 0.943 28 H 0.099 0.901 29 H 0.095 0.905 30 H 0.123 0.877 31 H 0.223 0.777 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.105 0.895 35 H 0.040 0.960 36 H 0.062 0.938 37 H 0.049 0.951 38 H 0.259 0.741 39 H 0.076 0.924 40 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.424 15.499 -1.563 21.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.059 4.059 3 N -0.143 5.143 4 N -0.134 5.134 5 C -0.052 4.052 6 C -0.035 4.035 7 C -0.323 4.323 8 C 0.366 3.634 9 O -0.474 6.474 10 N -0.337 5.337 11 C -0.020 4.020 12 C -0.165 4.165 13 C -0.141 4.141 14 C 0.019 3.981 15 H -0.001 1.001 16 C -0.576 4.576 17 H 0.081 0.919 18 C -0.189 4.189 19 N -0.553 5.553 20 Si 0.782 3.218 21 H -0.190 1.190 22 H -0.216 1.216 23 H -0.194 1.194 24 C 0.005 3.995 25 H 0.099 0.901 26 H 0.111 0.889 27 H 0.076 0.924 28 H 0.117 0.883 29 H 0.114 0.886 30 H 0.141 0.859 31 H 0.239 0.761 32 H 0.109 0.891 33 H 0.119 0.881 34 H 0.123 0.877 35 H 0.059 0.941 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.094 0.906 40 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 13.983 16.725 -1.097 21.828 hybrid contribution -0.928 -2.151 0.250 2.355 sum 13.056 14.574 -0.847 19.585 Atomic orbital electron populations 1.20159 0.86136 1.03000 1.03501 1.22512 0.97586 0.89239 0.96599 1.77046 0.87529 1.22214 1.27511 1.48686 1.06117 1.05171 1.53437 1.22451 0.82662 0.94429 1.05651 1.23477 0.98407 0.85399 0.96169 1.20209 0.94373 0.92914 1.24844 1.17911 0.81620 0.84817 0.79035 1.90740 1.30077 1.81506 1.45055 1.48357 1.37230 1.07774 1.40304 1.22146 0.90004 1.01083 0.88760 1.21911 1.01921 0.95673 0.97006 1.21506 0.98192 0.95515 0.98934 1.18895 0.93079 0.94471 0.91669 1.00100 1.21496 1.15246 0.92876 1.27962 0.91893 1.25901 0.95617 1.02332 0.95084 1.70098 1.19370 1.36207 1.29653 0.85626 0.77726 0.80336 0.78062 1.19029 1.21595 1.19405 1.21693 0.99522 0.77357 1.00977 0.90056 0.88877 0.92415 0.88303 0.88609 0.85900 0.76073 0.89060 0.88139 0.87710 0.94062 0.91930 0.93219 0.93184 0.90613 0.94065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.18 9.96 71.24 0.71 -1.47 16 2 C 0.11 3.51 7.26 43.51 0.32 3.82 16 3 N -0.32 -9.12 12.50 -46.68 -0.58 -9.70 16 4 N -0.36 -7.30 3.98 -367.78 -1.46 -8.77 16 5 C 0.09 0.71 11.44 127.77 1.46 2.17 16 6 C 0.12 2.62 9.10 84.28 0.77 3.39 16 7 C -0.31 -10.33 5.23 -20.15 -0.11 -10.43 16 8 C 0.58 25.09 7.33 86.67 0.64 25.73 16 9 O -0.59 -32.11 15.96 -4.04 -0.06 -32.18 16 10 N -0.61 -24.79 2.97 -822.76 -2.45 -27.24 16 11 C 0.10 2.86 5.47 86.36 0.47 3.34 16 12 C -0.13 -3.82 6.08 30.67 0.19 -3.63 16 13 C -0.10 -4.01 5.11 30.62 0.16 -3.85 16 14 C 0.04 1.96 2.25 -11.46 -0.03 1.93 16 15 H -0.02 -1.15 8.14 -2.38 -0.02 -1.17 16 16 C -0.54 -29.88 8.57 25.60 0.22 -29.66 16 17 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 18 C 0.01 0.58 5.30 84.66 0.45 1.03 16 19 N -0.91 -56.67 11.38 21.45 0.24 -56.43 16 20 Si 0.96 44.61 29.54 68.60 2.03 46.64 16 21 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 22 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 23 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 24 C 0.13 6.41 5.41 86.36 0.47 6.88 16 25 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 26 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 27 H 0.06 2.10 7.82 -2.38 -0.02 2.08 16 28 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.12 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.22 2.99 7.31 -2.91 -0.02 2.97 16 32 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 33 H 0.10 2.30 4.78 -2.39 -0.01 2.29 16 34 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 36 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 37 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.26 15.53 8.31 -92.71 -0.77 14.75 16 39 H 0.08 4.62 5.11 -2.39 -0.01 4.61 16 40 H 0.04 2.02 8.14 -2.38 -0.02 2.00 16 Total: -1.00 -81.34 324.93 4.45 -76.89 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: 1.03 Total: 11.54 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: 5.71 Total: -0.76 kcal Atomic # 7 Polarization: -97.89 SS G_CDS: -4.25 Total: -102.14 kcal Atomic # 8 Polarization: -32.11 SS G_CDS: -0.06 Total: -32.18 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -81.34 4.45 -76.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259772329.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.436 kcal (2) G-P(sol) polarization free energy of solvation -81.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds