Wall clock time and date at job start Mon Mar 30 2020 02:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38047 * 126.28798 * 2 1 4 4 C 1.47432 * 126.41567 * 359.96069 * 3 2 1 5 5 O 1.21605 * 119.99677 * 50.76414 * 4 3 2 6 6 N 1.34774 * 119.99786 * 230.48941 * 4 3 2 7 7 C 1.46926 * 120.63386 * 355.63127 * 6 4 3 8 8 C 1.53623 * 108.54146 * 126.37014 * 7 6 4 9 9 C 1.53045 * 109.24225 * 54.85848 * 8 7 6 10 10 C 1.53036 * 109.53607 * 298.51057 * 9 8 7 11 11 H 1.09000 * 109.50259 * 301.41234 * 10 9 8 12 12 C 1.50707 * 109.49668 * 181.31702 * 10 9 8 13 13 H 1.07991 * 119.99750 * 0.16127 * 12 10 9 14 14 C 1.37873 * 119.99877 * 180.16148 * 12 10 9 15 15 N 1.31511 * 120.00297 * 0.02562 * 14 12 10 16 16 Si 1.86801 * 119.99880 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47017 * 60.00389 * 16 14 12 18 18 H 1.48499 * 109.47076 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47247 * 300.00543 * 16 14 12 20 20 C 1.46931 * 120.62809 * 175.91504 * 6 4 3 21 21 C 1.41290 * 107.17061 * 180.22424 * 3 2 1 22 22 N 1.30453 * 108.02295 * 359.55653 * 21 3 2 23 23 N 1.34264 * 126.29673 * 179.97438 * 2 1 3 24 24 C 1.46500 * 125.74952 * 0.05913 * 23 2 1 25 25 H 1.09003 * 109.47183 * 90.00457 * 1 2 3 26 26 H 1.09003 * 109.46717 * 210.00219 * 1 2 3 27 27 H 1.08995 * 109.47357 * 329.99700 * 1 2 3 28 28 H 1.08995 * 109.58811 * 246.19978 * 7 6 4 29 29 H 1.08999 * 109.58584 * 6.63147 * 7 6 4 30 30 H 1.09004 * 109.63492 * 294.86613 * 8 7 6 31 31 H 1.09000 * 109.45743 * 174.74528 * 8 7 6 32 32 H 1.09006 * 109.46027 * 178.49065 * 9 8 7 33 33 H 1.08997 * 109.44707 * 58.52566 * 9 8 7 34 34 H 0.97005 * 120.00291 * 179.97438 * 15 14 12 35 35 H 1.09000 * 109.58278 * 353.37510 * 20 6 4 36 36 H 1.09005 * 109.58556 * 113.79860 * 20 6 4 37 37 H 1.08005 * 125.99244 * 179.72978 * 21 3 2 38 38 H 1.08998 * 109.47204 * 90.00216 * 24 23 2 39 39 H 1.08999 * 109.46556 * 209.99789 * 24 23 2 40 40 H 1.09000 * 109.47233 * 330.00011 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1127 0.0000 4 6 1.8856 2.5204 -0.0008 5 8 1.0684 2.9031 0.8143 6 7 2.3948 3.3842 -0.9014 7 6 3.4562 2.9628 -1.8258 8 6 3.0081 3.2787 -3.2608 9 6 2.6409 4.7612 -3.3597 10 6 1.4765 5.0642 -2.4141 11 1 0.6225 4.4398 -2.6767 12 6 1.0945 6.5170 -2.5360 13 1 1.6270 7.1596 -3.2214 14 6 0.0654 7.0256 -1.7724 15 7 -0.5827 6.2431 -0.9374 16 14 -0.4076 8.8264 -1.9229 17 1 -0.8211 9.1145 -3.3198 18 1 -1.5346 9.1209 -1.0019 19 1 0.7573 9.6756 -1.5664 20 6 1.9033 4.7669 -0.9732 21 6 3.6589 0.6500 -0.0053 22 7 3.6341 -0.6543 0.0014 23 7 2.3018 -1.0821 0.0005 24 6 1.8502 -2.4758 -0.0001 25 1 -0.3634 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8899 0.5138 28 1 4.3745 3.5046 -1.5993 29 1 3.6267 1.8912 -1.7224 30 1 2.1397 2.6711 -3.5155 31 1 3.8216 3.0585 -3.9521 32 1 2.3479 4.9953 -4.3833 33 1 3.5025 5.3678 -3.0809 34 1 -1.3066 6.6010 -0.3998 35 1 1.0489 4.8861 -0.3070 36 1 2.6976 5.4528 -0.6785 37 1 4.5448 1.2678 -0.0108 38 1 1.7391 -2.8213 -1.0279 39 1 2.5845 -3.0958 0.5142 40 1 0.8911 -2.5472 0.5129 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259834863.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:11 Heat of formation + Delta-G solvation = 35.835214 kcal Electronic energy + Delta-G solvation = -22184.394347 eV Core-core repulsion = 19000.622688 eV Total energy + Delta-G solvation = -3183.771659 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.35266 -38.89316 -36.48212 -33.82500 -33.12336 -31.88476 -31.58691 -29.74305 -27.53788 -26.83483 -24.97775 -24.48179 -21.83507 -21.70091 -20.43158 -19.31231 -18.12076 -17.00518 -16.14283 -15.98234 -15.43249 -15.08177 -14.50939 -14.33617 -14.09664 -13.56369 -13.33127 -13.22233 -13.16407 -12.67319 -12.56818 -12.49023 -12.42720 -12.06094 -11.91339 -11.75270 -10.94654 -10.85811 -10.77067 -10.47914 -10.33216 -10.17995 -9.83161 -9.31386 -9.24711 -9.07094 -8.83201 -8.39011 -8.33106 -7.61704 -5.96171 -4.04731 1.74908 2.38852 2.50081 3.34186 3.40269 3.41586 3.55817 4.00212 4.44689 4.47762 4.64947 4.91826 4.98218 5.08451 5.21074 5.33967 5.37724 5.48667 5.55407 5.57720 5.67744 5.79849 5.93772 6.07644 6.12810 6.28054 6.38223 6.51547 6.67005 6.75799 6.91458 6.93691 7.03535 7.24216 7.39885 7.64042 7.69601 7.93153 8.05465 8.38287 8.44018 8.97228 9.05425 9.60659 11.09133 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027791 B = 0.004882 C = 0.004458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.275603 B = 5733.900786 C = 6278.937294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.135 3.865 3 C -0.275 4.275 4 C 0.585 3.415 5 O -0.541 6.541 6 N -0.599 5.599 7 C 0.105 3.895 8 C -0.132 4.132 9 C -0.111 4.111 10 C 0.041 3.959 11 H 0.028 0.972 12 C -0.521 4.521 13 H 0.057 0.943 14 C 0.063 3.937 15 N -0.881 5.881 16 Si 0.892 3.108 17 H -0.278 1.278 18 H -0.287 1.287 19 H -0.277 1.277 20 C 0.114 3.886 21 C 0.080 3.920 22 N -0.305 5.305 23 N -0.369 5.369 24 C 0.100 3.900 25 H 0.084 0.916 26 H 0.071 0.929 27 H 0.103 0.897 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.050 0.950 33 H 0.049 0.951 34 H 0.264 0.736 35 H 0.123 0.877 36 H 0.041 0.959 37 H 0.188 0.812 38 H 0.076 0.924 39 H 0.089 0.911 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.516 -15.388 -0.149 16.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.005 3.995 3 C -0.290 4.290 4 C 0.371 3.629 5 O -0.419 6.419 6 N -0.331 5.331 7 C -0.019 4.019 8 C -0.170 4.170 9 C -0.148 4.148 10 C 0.022 3.978 11 H 0.046 0.954 12 C -0.560 4.560 13 H 0.075 0.925 14 C -0.139 4.139 15 N -0.518 5.518 16 Si 0.720 3.280 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.006 4.006 21 C -0.107 4.107 22 N -0.125 5.125 23 N -0.150 5.150 24 C -0.042 4.042 25 H 0.102 0.898 26 H 0.089 0.911 27 H 0.122 0.878 28 H 0.079 0.921 29 H 0.094 0.906 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.140 0.860 36 H 0.059 0.941 37 H 0.205 0.795 38 H 0.094 0.906 39 H 0.108 0.892 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.590 -16.385 0.433 17.318 hybrid contribution -0.575 1.631 -0.178 1.739 sum 5.015 -14.754 0.255 15.585 Atomic orbital electron populations 1.20621 0.86468 1.04852 1.03878 1.21364 0.94665 0.86194 0.97285 1.20226 0.92939 0.94365 1.21444 1.17275 0.81108 0.83465 0.81024 1.90761 1.34423 1.78347 1.38328 1.48358 1.37604 1.13629 1.33483 1.21865 0.90349 0.99724 0.89978 1.22003 1.00428 0.99242 0.95356 1.21630 0.99952 0.92869 1.00373 1.18959 0.92434 0.96593 0.89841 0.95403 1.21052 1.16878 0.94474 1.23587 0.92454 1.25037 0.96023 0.97697 0.95174 1.69874 1.22253 1.35114 1.24591 0.86665 0.78081 0.85434 0.77853 1.20335 1.21278 1.20255 1.22276 0.99715 0.76113 1.02496 1.23960 0.97183 0.91671 0.97887 1.77093 0.96135 1.13225 1.26050 1.48206 1.04003 1.06039 1.56758 1.21871 1.01088 0.77720 1.03490 0.89756 0.91063 0.87845 0.92136 0.90551 0.92344 0.92470 0.93162 0.93195 0.92629 0.85951 0.94052 0.79493 0.90572 0.89187 0.89402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.26 9.93 36.00 0.36 -0.90 16 2 C 0.14 2.01 7.01 -81.60 -0.57 1.44 16 3 C -0.28 -4.72 5.12 -105.06 -0.54 -5.25 16 4 C 0.58 12.30 7.32 -12.52 -0.09 12.21 16 5 O -0.54 -13.46 15.62 5.27 0.08 -13.37 16 6 N -0.60 -12.38 2.97 -173.77 -0.52 -12.89 16 7 C 0.10 1.72 5.94 -3.49 -0.02 1.70 16 8 C -0.13 -2.22 6.10 -26.38 -0.16 -2.38 16 9 C -0.11 -2.23 5.10 -26.69 -0.14 -2.36 16 10 C 0.04 1.01 2.25 -91.65 -0.21 0.81 16 11 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 12 C -0.52 -14.15 8.56 -34.44 -0.29 -14.45 16 13 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 14 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 15 N -0.88 -25.61 11.39 55.43 0.63 -24.98 16 16 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 20 C 0.11 2.80 5.39 -3.71 -0.02 2.78 16 21 C 0.08 1.18 9.65 -16.98 -0.16 1.01 16 22 N -0.30 -4.45 12.50 30.86 0.39 -4.06 16 23 N -0.37 -4.80 3.98 -63.34 -0.25 -5.05 16 24 C 0.10 0.77 11.24 59.85 0.67 1.44 16 25 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.07 0.65 7.05 -51.93 -0.37 0.28 16 27 H 0.10 1.60 7.14 -51.93 -0.37 1.23 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.08 1.12 4.56 -51.93 -0.24 0.88 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.12 3.49 5.14 -51.93 -0.27 3.22 16 36 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.19 2.28 7.65 -52.48 -0.40 1.88 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.09 0.50 7.02 -51.93 -0.36 0.13 16 LS Contribution 322.26 15.07 4.86 4.86 Total: -1.00 -33.26 322.26 -6.88 -40.14 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -5.78 Total: 1.42 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: -1.27 Total: -2.29 kcal Atomic # 7 Polarization: -47.24 SS G_CDS: 0.25 Total: -46.99 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: 0.08 Total: -13.37 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.26 -6.88 -40.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259834863.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.971 kcal (2) G-P(sol) polarization free energy of solvation -33.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds