Wall clock time and date at job start Mon Mar 30 2020 02:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38047 * 126.28798 * 2 1 4 4 C 1.47432 * 126.41567 * 359.96069 * 3 2 1 5 5 O 1.21605 * 119.99677 * 50.76414 * 4 3 2 6 6 N 1.34774 * 119.99786 * 230.48941 * 4 3 2 7 7 C 1.46926 * 120.63386 * 355.63127 * 6 4 3 8 8 C 1.53623 * 108.54146 * 126.37014 * 7 6 4 9 9 C 1.53045 * 109.24225 * 54.85848 * 8 7 6 10 10 C 1.53036 * 109.53607 * 298.51057 * 9 8 7 11 11 H 1.09000 * 109.50259 * 301.41234 * 10 9 8 12 12 C 1.50707 * 109.49668 * 181.31702 * 10 9 8 13 13 H 1.07991 * 119.99750 * 0.16127 * 12 10 9 14 14 C 1.37873 * 119.99877 * 180.16148 * 12 10 9 15 15 N 1.31511 * 120.00297 * 0.02562 * 14 12 10 16 16 Si 1.86801 * 119.99880 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47017 * 60.00389 * 16 14 12 18 18 H 1.48499 * 109.47076 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47247 * 300.00543 * 16 14 12 20 20 C 1.46931 * 120.62809 * 175.91504 * 6 4 3 21 21 C 1.41290 * 107.17061 * 180.22424 * 3 2 1 22 22 N 1.30453 * 108.02295 * 359.55653 * 21 3 2 23 23 N 1.34264 * 126.29673 * 179.97438 * 2 1 3 24 24 C 1.46500 * 125.74952 * 0.05913 * 23 2 1 25 25 H 1.09003 * 109.47183 * 90.00457 * 1 2 3 26 26 H 1.09003 * 109.46717 * 210.00219 * 1 2 3 27 27 H 1.08995 * 109.47357 * 329.99700 * 1 2 3 28 28 H 1.08995 * 109.58811 * 246.19978 * 7 6 4 29 29 H 1.08999 * 109.58584 * 6.63147 * 7 6 4 30 30 H 1.09004 * 109.63492 * 294.86613 * 8 7 6 31 31 H 1.09000 * 109.45743 * 174.74528 * 8 7 6 32 32 H 1.09006 * 109.46027 * 178.49065 * 9 8 7 33 33 H 1.08997 * 109.44707 * 58.52566 * 9 8 7 34 34 H 0.97005 * 120.00291 * 179.97438 * 15 14 12 35 35 H 1.09000 * 109.58278 * 353.37510 * 20 6 4 36 36 H 1.09005 * 109.58556 * 113.79860 * 20 6 4 37 37 H 1.08005 * 125.99244 * 179.72978 * 21 3 2 38 38 H 1.08998 * 109.47204 * 90.00216 * 24 23 2 39 39 H 1.08999 * 109.46556 * 209.99789 * 24 23 2 40 40 H 1.09000 * 109.47233 * 330.00011 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1127 0.0000 4 6 1.8856 2.5204 -0.0008 5 8 1.0684 2.9031 0.8143 6 7 2.3948 3.3842 -0.9014 7 6 3.4562 2.9628 -1.8258 8 6 3.0081 3.2787 -3.2608 9 6 2.6409 4.7612 -3.3597 10 6 1.4765 5.0642 -2.4141 11 1 0.6225 4.4398 -2.6767 12 6 1.0945 6.5170 -2.5360 13 1 1.6270 7.1596 -3.2214 14 6 0.0654 7.0256 -1.7724 15 7 -0.5827 6.2431 -0.9374 16 14 -0.4076 8.8264 -1.9229 17 1 -0.8211 9.1145 -3.3198 18 1 -1.5346 9.1209 -1.0019 19 1 0.7573 9.6756 -1.5664 20 6 1.9033 4.7669 -0.9732 21 6 3.6589 0.6500 -0.0053 22 7 3.6341 -0.6543 0.0014 23 7 2.3018 -1.0821 0.0005 24 6 1.8502 -2.4758 -0.0001 25 1 -0.3634 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8899 0.5138 28 1 4.3745 3.5046 -1.5993 29 1 3.6267 1.8912 -1.7224 30 1 2.1397 2.6711 -3.5155 31 1 3.8216 3.0585 -3.9521 32 1 2.3479 4.9953 -4.3833 33 1 3.5025 5.3678 -3.0809 34 1 -1.3066 6.6010 -0.3998 35 1 1.0489 4.8861 -0.3070 36 1 2.6976 5.4528 -0.6785 37 1 4.5448 1.2678 -0.0108 38 1 1.7391 -2.8213 -1.0279 39 1 2.5845 -3.0958 0.5142 40 1 0.8911 -2.5472 0.5129 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259834863.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:11 Heat of formation + Delta-G solvation = 13.771871 kcal Electronic energy + Delta-G solvation = -22185.351086 eV Core-core repulsion = 19000.622688 eV Total energy + Delta-G solvation = -3184.728397 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.50117 -40.49765 -38.19410 -35.35783 -34.54600 -33.37855 -32.90462 -31.50134 -28.77231 -27.75118 -26.87944 -26.04894 -23.45188 -23.07660 -21.65526 -20.83556 -19.58274 -18.60928 -17.94779 -17.17563 -16.72006 -16.57057 -16.34173 -15.75026 -15.35641 -15.08786 -14.81217 -14.61173 -14.26306 -14.12307 -14.04751 -13.62453 -13.49955 -13.39457 -13.34088 -13.02378 -12.83095 -12.65266 -12.25314 -12.22434 -11.93622 -11.80224 -11.60246 -11.09455 -10.92675 -10.66331 -10.48374 -10.30413 -9.59104 -9.28930 -8.07965 -6.25020 0.60958 1.25887 1.42808 1.44245 1.45758 1.52800 2.02752 2.41810 2.49302 3.20204 3.52007 3.60481 3.98882 4.00717 4.12992 4.19464 4.30431 4.38500 4.41375 4.56993 4.60500 4.62759 4.68201 4.77646 4.84382 4.87072 4.96386 5.04106 5.11627 5.27735 5.29710 5.37172 5.44642 5.58752 5.69991 5.92603 5.93163 6.03042 6.36390 6.53614 6.75090 6.87401 7.40491 7.45687 8.95449 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027791 B = 0.004882 C = 0.004458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.275603 B = 5733.900786 C = 6278.937294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.138 3.862 3 C -0.310 4.310 4 C 0.581 3.419 5 O -0.594 6.594 6 N -0.602 5.602 7 C 0.102 3.898 8 C -0.124 4.124 9 C -0.105 4.105 10 C 0.040 3.960 11 H -0.014 1.014 12 C -0.538 4.538 13 H 0.062 0.938 14 C 0.011 3.989 15 N -0.915 5.915 16 Si 0.957 3.043 17 H -0.268 1.268 18 H -0.289 1.289 19 H -0.268 1.268 20 C 0.127 3.873 21 C 0.084 3.916 22 N -0.312 5.312 23 N -0.359 5.359 24 C 0.085 3.915 25 H 0.094 0.906 26 H 0.111 0.889 27 H 0.067 0.933 28 H 0.083 0.917 29 H 0.100 0.900 30 H 0.046 0.954 31 H 0.100 0.900 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.260 0.740 35 H 0.078 0.922 36 H 0.036 0.964 37 H 0.210 0.790 38 H 0.096 0.904 39 H 0.103 0.897 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.154 -17.149 -1.281 18.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.006 3.994 3 C -0.325 4.325 4 C 0.370 3.630 5 O -0.476 6.476 6 N -0.333 5.333 7 C -0.020 4.020 8 C -0.162 4.162 9 C -0.142 4.142 10 C 0.021 3.979 11 H 0.005 0.995 12 C -0.576 4.576 13 H 0.080 0.920 14 C -0.188 4.188 15 N -0.553 5.553 16 Si 0.782 3.218 17 H -0.193 1.193 18 H -0.215 1.215 19 H -0.193 1.193 20 C 0.005 3.995 21 C -0.102 4.102 22 N -0.132 5.132 23 N -0.139 5.139 24 C -0.054 4.054 25 H 0.112 0.888 26 H 0.130 0.870 27 H 0.086 0.914 28 H 0.101 0.899 29 H 0.118 0.882 30 H 0.065 0.935 31 H 0.119 0.881 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.096 0.904 36 H 0.054 0.946 37 H 0.226 0.774 38 H 0.114 0.886 39 H 0.121 0.879 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 7.275 -18.194 -0.738 19.608 hybrid contribution -1.111 2.071 0.176 2.357 sum 6.164 -16.122 -0.563 17.270 Atomic orbital electron populations 1.20641 0.85324 1.05056 1.04555 1.21589 0.95505 0.86355 0.95992 1.19974 0.94818 0.92460 1.25214 1.17865 0.80064 0.85023 0.80003 1.90720 1.36865 1.79572 1.40446 1.48363 1.38463 1.12157 1.34319 1.22172 0.89588 1.01524 0.88682 1.21961 1.01501 0.96254 0.96523 1.21519 0.98065 0.95697 0.98947 1.18884 0.92981 0.94813 0.91212 0.99542 1.21492 1.16917 0.95850 1.23347 0.91980 1.25873 0.96122 1.01989 0.94812 1.70076 1.22710 1.37013 1.25531 0.85627 0.77800 0.80283 0.78056 1.19315 1.21452 1.19281 1.21718 0.97942 0.78574 1.01270 1.24215 0.96796 0.91879 0.97306 1.77067 0.97140 1.12898 1.26137 1.48591 1.03166 1.07335 1.54788 1.22378 1.02631 0.74935 1.05414 0.88779 0.87004 0.91434 0.89852 0.88152 0.93524 0.88131 0.92968 0.92318 0.93112 0.90420 0.94604 0.77379 0.88599 0.87852 0.86958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.38 9.93 71.23 0.71 -1.67 16 2 C 0.14 3.93 7.01 42.14 0.30 4.23 16 3 C -0.31 -10.50 5.12 -20.15 -0.10 -10.60 16 4 C 0.58 25.37 7.32 86.67 0.63 26.00 16 5 O -0.59 -31.61 15.62 -4.05 -0.06 -31.67 16 6 N -0.60 -25.41 2.97 -821.93 -2.44 -27.85 16 7 C 0.10 3.17 5.94 86.51 0.51 3.68 16 8 C -0.12 -3.90 6.10 30.82 0.19 -3.71 16 9 C -0.10 -4.13 5.10 30.62 0.16 -3.97 16 10 C 0.04 2.07 2.25 -11.46 -0.03 2.04 16 11 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 12 C -0.54 -29.89 8.56 25.60 0.22 -29.67 16 13 H 0.06 3.31 7.74 -2.92 -0.02 3.28 16 14 C 0.01 0.65 5.30 84.65 0.45 1.10 16 15 N -0.91 -55.93 11.39 21.45 0.24 -55.68 16 16 Si 0.96 44.46 29.54 68.60 2.03 46.49 16 17 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 18 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 19 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 20 C 0.13 6.52 5.39 86.36 0.47 6.98 16 21 C 0.08 2.33 9.65 85.65 0.83 3.15 16 22 N -0.31 -8.28 12.50 -56.27 -0.70 -8.99 16 23 N -0.36 -8.33 3.98 -354.31 -1.41 -9.74 16 24 C 0.09 0.99 11.24 127.77 1.44 2.43 16 25 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 26 H 0.11 1.73 7.05 -2.39 -0.02 1.72 16 27 H 0.07 2.19 7.14 -2.39 -0.02 2.17 16 28 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.10 2.68 4.56 -2.39 -0.01 2.67 16 30 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 33 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.26 15.32 8.31 -92.70 -0.77 14.55 16 35 H 0.08 4.74 5.14 -2.39 -0.01 4.72 16 36 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 37 H 0.21 4.54 7.65 -2.91 -0.02 4.52 16 38 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.11 0.78 7.02 -2.39 -0.02 0.77 16 Total: -1.00 -77.57 322.26 4.46 -73.11 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: 1.04 Total: 14.34 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: 5.76 Total: -0.01 kcal Atomic # 7 Polarization: -97.94 SS G_CDS: -4.31 Total: -102.25 kcal Atomic # 8 Polarization: -31.61 SS G_CDS: -0.06 Total: -31.67 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -77.57 4.46 -73.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259834863.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.881 kcal (2) G-P(sol) polarization free energy of solvation -77.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds