Wall clock time and date at job start Mon Mar 30 2020 02:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38050 * 126.28963 * 2 1 4 4 C 1.47432 * 126.41278 * 359.94780 * 3 2 1 5 5 O 1.21599 * 120.00036 * 310.09957 * 4 3 2 6 6 N 1.34773 * 119.99802 * 130.09899 * 4 3 2 7 7 C 1.46925 * 120.63317 * 4.30474 * 6 4 3 8 8 C 1.53195 * 108.77574 * 233.58653 * 7 6 4 9 9 C 1.53038 * 109.30940 * 305.36145 * 8 7 6 10 10 C 1.53036 * 109.54060 * 61.36511 * 9 8 7 11 11 H 1.09007 * 109.49811 * 58.58562 * 10 9 8 12 12 C 1.50699 * 109.50087 * 178.64925 * 10 9 8 13 13 H 1.08006 * 119.99929 * 359.97438 * 12 10 9 14 14 C 1.37877 * 120.00074 * 180.02562 * 12 10 9 15 15 N 1.31508 * 119.99914 * 359.97438 * 14 12 10 16 16 Si 1.86799 * 119.99691 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47630 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47162 * 120.00097 * 16 14 12 19 19 H 1.48510 * 109.47092 * 239.99419 * 16 14 12 20 20 C 1.46922 * 120.63082 * 184.01933 * 6 4 3 21 21 C 1.41286 * 107.17001 * 179.97438 * 3 2 1 22 22 N 1.30450 * 108.02489 * 359.73820 * 21 3 2 23 23 N 1.34251 * 126.29603 * 179.97438 * 2 1 3 24 24 C 1.46497 * 125.75467 * 0.02562 * 23 2 1 25 25 H 1.08999 * 109.47768 * 270.00323 * 1 2 3 26 26 H 1.09002 * 109.47475 * 30.01270 * 1 2 3 27 27 H 1.09010 * 109.46877 * 150.00492 * 1 2 3 28 28 H 1.09005 * 109.58692 * 353.37036 * 7 6 4 29 29 H 1.09002 * 109.58694 * 113.65203 * 7 6 4 30 30 H 1.08998 * 109.49638 * 65.31037 * 8 7 6 31 31 H 1.08999 * 109.49662 * 185.41381 * 8 7 6 32 32 H 1.09003 * 109.46037 * 181.38531 * 9 8 7 33 33 H 1.09007 * 109.46265 * 301.34180 * 9 8 7 34 34 H 0.97003 * 119.99604 * 179.97438 * 15 14 12 35 35 H 1.08994 * 109.59326 * 246.20348 * 20 6 4 36 36 H 1.08998 * 109.59034 * 6.62991 * 20 6 4 37 37 H 1.08007 * 125.98896 * 179.97438 * 21 3 2 38 38 H 1.09003 * 109.47402 * 89.99362 * 24 23 2 39 39 H 1.09006 * 109.46865 * 329.99588 * 24 23 2 40 40 H 1.08997 * 109.47525 * 209.99752 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1127 0.0000 4 6 1.8857 2.5204 -0.0011 5 8 1.0578 2.8988 -0.8074 6 7 2.4024 3.3877 0.8917 7 6 3.4707 2.9697 1.8096 8 6 3.0411 3.2901 3.2448 9 6 2.6717 4.7719 3.3435 10 6 1.4966 5.0699 2.4096 11 1 0.6468 4.4442 2.6830 12 6 1.1122 6.5218 2.5322 13 1 1.6516 7.1680 3.2090 14 6 0.0711 7.0252 1.7813 15 7 -0.5860 6.2383 0.9576 16 14 -0.4048 8.8251 1.9328 17 1 0.4833 9.4907 2.9195 18 1 -0.2621 9.4878 0.6116 19 1 -1.8146 8.9278 2.3882 20 6 1.9126 4.7711 0.9612 21 6 3.6589 0.6500 0.0006 22 7 3.6340 -0.6543 0.0066 23 7 2.3017 -1.0820 0.0005 24 6 1.8502 -2.4757 0.0006 25 1 -0.3634 0.0001 1.0276 26 1 -0.3634 0.8899 -0.5140 27 1 -0.3633 -0.8901 -0.5138 28 1 3.6397 1.8974 1.7096 29 1 4.3883 3.5079 1.5718 30 1 2.1769 2.6812 3.5103 31 1 3.8628 3.0737 3.9274 32 1 2.3892 5.0081 4.3695 33 1 3.5289 5.3800 3.0541 34 1 -1.3187 6.5924 0.4296 35 1 2.7049 5.4552 0.6573 36 1 1.0531 4.8881 0.3012 37 1 4.5449 1.2678 0.0004 38 1 1.7385 -2.8216 -1.0271 39 1 0.8914 -2.5469 0.5142 40 1 2.5847 -3.0956 0.5147 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259834866.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:14 Heat of formation + Delta-G solvation = 35.498946 kcal Electronic energy + Delta-G solvation = -22183.312816 eV Core-core repulsion = 18999.526576 eV Total energy + Delta-G solvation = -3183.786241 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.35419 -38.89526 -36.48572 -33.82192 -33.11956 -31.88266 -31.59595 -29.74879 -27.54270 -26.82681 -24.98057 -24.48168 -21.83839 -21.69589 -20.43355 -19.31851 -18.12423 -17.00678 -16.14324 -15.94172 -15.45829 -15.06640 -14.50478 -14.34152 -14.10227 -13.56478 -13.31145 -13.22254 -13.16605 -12.69557 -12.56679 -12.51029 -12.40463 -12.08287 -11.92170 -11.75853 -10.97486 -10.85439 -10.76647 -10.44410 -10.32496 -10.18595 -9.83245 -9.30614 -9.24410 -9.07600 -8.82350 -8.39938 -8.33379 -7.61770 -5.96688 -4.04878 1.74519 2.38970 2.49660 3.31992 3.40662 3.43710 3.56226 4.00411 4.44564 4.47535 4.65061 4.93751 4.95902 5.13479 5.20040 5.33760 5.37769 5.48030 5.54750 5.57883 5.67458 5.80001 5.93320 6.07829 6.13067 6.28033 6.38229 6.51472 6.66723 6.75564 6.91558 6.93463 7.03180 7.23826 7.39524 7.63965 7.69570 7.92589 8.04955 8.38081 8.43751 8.97591 9.05295 9.60605 11.08811 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027758 B = 0.004884 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.475638 B = 5731.384213 C = 6282.445757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.136 3.864 3 C -0.275 4.275 4 C 0.585 3.415 5 O -0.541 6.541 6 N -0.599 5.599 7 C 0.105 3.895 8 C -0.132 4.132 9 C -0.111 4.111 10 C 0.041 3.959 11 H 0.028 0.972 12 C -0.520 4.520 13 H 0.058 0.942 14 C 0.063 3.937 15 N -0.880 5.880 16 Si 0.891 3.109 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.114 3.886 21 C 0.080 3.920 22 N -0.305 5.305 23 N -0.369 5.369 24 C 0.100 3.900 25 H 0.084 0.916 26 H 0.103 0.897 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.050 0.950 33 H 0.049 0.951 34 H 0.262 0.738 35 H 0.041 0.959 36 H 0.122 0.878 37 H 0.188 0.812 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.582 -15.372 0.209 16.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.005 3.995 3 C -0.290 4.290 4 C 0.371 3.629 5 O -0.419 6.419 6 N -0.331 5.331 7 C -0.019 4.019 8 C -0.170 4.170 9 C -0.148 4.148 10 C 0.021 3.979 11 H 0.046 0.954 12 C -0.558 4.558 13 H 0.076 0.924 14 C -0.140 4.140 15 N -0.518 5.518 16 Si 0.719 3.281 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.211 1.211 20 C -0.006 4.006 21 C -0.107 4.107 22 N -0.125 5.125 23 N -0.150 5.150 24 C -0.042 4.042 25 H 0.102 0.898 26 H 0.122 0.878 27 H 0.090 0.910 28 H 0.094 0.906 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.140 0.860 37 H 0.205 0.795 38 H 0.094 0.906 39 H 0.106 0.894 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.655 -16.372 -0.347 17.325 hybrid contribution -0.594 1.621 0.130 1.732 sum 5.061 -14.750 -0.217 15.596 Atomic orbital electron populations 1.20620 0.86460 1.04926 1.03860 1.21366 0.94667 0.86183 0.97238 1.20224 0.92944 0.94368 1.21455 1.17273 0.81208 0.83454 0.80941 1.90759 1.33918 1.78530 1.38662 1.48351 1.37183 1.13502 1.34023 1.21776 0.90231 0.99766 0.90116 1.21925 1.00476 0.99259 0.95379 1.21630 0.99951 0.92863 1.00378 1.19045 0.92365 0.96637 0.89811 0.95351 1.21132 1.15973 0.94490 1.24253 0.92356 1.25043 0.96075 0.97683 0.95180 1.69901 1.21565 1.34907 1.25437 0.86557 0.78298 0.85389 0.77881 1.19812 1.20975 1.21063 1.22353 0.99732 0.76098 1.02403 1.23960 0.97186 0.91674 0.97878 1.77091 0.96152 1.13225 1.26033 1.48205 1.04000 1.06035 1.56793 1.21868 1.01104 0.77736 1.03453 0.89791 0.87787 0.91047 0.90566 0.92183 0.92352 0.92430 0.93159 0.93193 0.92757 0.94031 0.86022 0.79492 0.90646 0.89389 0.89128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.26 9.70 36.00 0.35 -0.92 16 2 C 0.14 2.02 7.01 -81.61 -0.57 1.45 16 3 C -0.28 -4.72 5.12 -105.06 -0.54 -5.26 16 4 C 0.58 12.30 7.33 -12.52 -0.09 12.21 16 5 O -0.54 -13.45 15.57 5.28 0.08 -13.37 16 6 N -0.60 -12.37 2.97 -173.77 -0.52 -12.88 16 7 C 0.10 1.72 5.90 -3.71 -0.02 1.70 16 8 C -0.13 -2.21 6.08 -26.61 -0.16 -2.38 16 9 C -0.11 -2.23 5.10 -26.69 -0.14 -2.36 16 10 C 0.04 1.01 2.26 -91.43 -0.21 0.80 16 11 H 0.03 0.78 8.14 -51.92 -0.42 0.36 16 12 C -0.52 -14.10 8.56 -34.44 -0.29 -14.40 16 13 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 14 C 0.06 1.74 5.31 -17.82 -0.09 1.64 16 15 N -0.88 -25.61 11.41 55.43 0.63 -24.97 16 16 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 17 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 C 0.11 2.80 5.42 -3.49 -0.02 2.78 16 21 C 0.08 1.18 9.65 -16.98 -0.16 1.01 16 22 N -0.30 -4.45 12.50 30.86 0.39 -4.06 16 23 N -0.37 -4.80 3.98 -63.34 -0.25 -5.05 16 24 C 0.10 0.77 11.06 59.85 0.66 1.43 16 25 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.10 1.61 7.11 -51.93 -0.37 1.24 16 27 H 0.07 0.65 7.70 -51.92 -0.40 0.25 16 28 H 0.08 1.12 4.55 -51.93 -0.24 0.88 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.12 3.46 5.17 -51.93 -0.27 3.19 16 37 H 0.19 2.28 7.63 -52.48 -0.40 1.88 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.09 0.49 7.62 -51.93 -0.40 0.10 16 40 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 323.04 15.07 4.87 4.87 Total: -1.00 -33.31 323.04 -6.95 -40.25 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -5.84 Total: 1.28 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: -1.29 Total: -2.29 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: 0.25 Total: -46.97 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: 0.08 Total: -13.37 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.31 -6.95 -40.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259834866.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.752 kcal (2) G-P(sol) polarization free energy of solvation -33.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds