Wall clock time and date at job start Mon Mar 30 2020 02:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38050 * 126.28963 * 2 1 4 4 C 1.47432 * 126.41278 * 359.94780 * 3 2 1 5 5 O 1.21599 * 120.00036 * 310.09957 * 4 3 2 6 6 N 1.34773 * 119.99802 * 130.09899 * 4 3 2 7 7 C 1.46925 * 120.63317 * 4.30474 * 6 4 3 8 8 C 1.53195 * 108.77574 * 233.58653 * 7 6 4 9 9 C 1.53038 * 109.30940 * 305.36145 * 8 7 6 10 10 C 1.53036 * 109.54060 * 61.36511 * 9 8 7 11 11 H 1.09007 * 109.49811 * 58.58562 * 10 9 8 12 12 C 1.50699 * 109.50087 * 178.64925 * 10 9 8 13 13 H 1.08006 * 119.99929 * 359.97438 * 12 10 9 14 14 C 1.37877 * 120.00074 * 180.02562 * 12 10 9 15 15 N 1.31508 * 119.99914 * 359.97438 * 14 12 10 16 16 Si 1.86799 * 119.99691 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47630 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47162 * 120.00097 * 16 14 12 19 19 H 1.48510 * 109.47092 * 239.99419 * 16 14 12 20 20 C 1.46922 * 120.63082 * 184.01933 * 6 4 3 21 21 C 1.41286 * 107.17001 * 179.97438 * 3 2 1 22 22 N 1.30450 * 108.02489 * 359.73820 * 21 3 2 23 23 N 1.34251 * 126.29603 * 179.97438 * 2 1 3 24 24 C 1.46497 * 125.75467 * 0.02562 * 23 2 1 25 25 H 1.08999 * 109.47768 * 270.00323 * 1 2 3 26 26 H 1.09002 * 109.47475 * 30.01270 * 1 2 3 27 27 H 1.09010 * 109.46877 * 150.00492 * 1 2 3 28 28 H 1.09005 * 109.58692 * 353.37036 * 7 6 4 29 29 H 1.09002 * 109.58694 * 113.65203 * 7 6 4 30 30 H 1.08998 * 109.49638 * 65.31037 * 8 7 6 31 31 H 1.08999 * 109.49662 * 185.41381 * 8 7 6 32 32 H 1.09003 * 109.46037 * 181.38531 * 9 8 7 33 33 H 1.09007 * 109.46265 * 301.34180 * 9 8 7 34 34 H 0.97003 * 119.99604 * 179.97438 * 15 14 12 35 35 H 1.08994 * 109.59326 * 246.20348 * 20 6 4 36 36 H 1.08998 * 109.59034 * 6.62991 * 20 6 4 37 37 H 1.08007 * 125.98896 * 179.97438 * 21 3 2 38 38 H 1.09003 * 109.47402 * 89.99362 * 24 23 2 39 39 H 1.09006 * 109.46865 * 329.99588 * 24 23 2 40 40 H 1.08997 * 109.47525 * 209.99752 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1127 0.0000 4 6 1.8857 2.5204 -0.0011 5 8 1.0578 2.8988 -0.8074 6 7 2.4024 3.3877 0.8917 7 6 3.4707 2.9697 1.8096 8 6 3.0411 3.2901 3.2448 9 6 2.6717 4.7719 3.3435 10 6 1.4966 5.0699 2.4096 11 1 0.6468 4.4442 2.6830 12 6 1.1122 6.5218 2.5322 13 1 1.6516 7.1680 3.2090 14 6 0.0711 7.0252 1.7813 15 7 -0.5860 6.2383 0.9576 16 14 -0.4048 8.8251 1.9328 17 1 0.4833 9.4907 2.9195 18 1 -0.2621 9.4878 0.6116 19 1 -1.8146 8.9278 2.3882 20 6 1.9126 4.7711 0.9612 21 6 3.6589 0.6500 0.0006 22 7 3.6340 -0.6543 0.0066 23 7 2.3017 -1.0820 0.0005 24 6 1.8502 -2.4757 0.0006 25 1 -0.3634 0.0001 1.0276 26 1 -0.3634 0.8899 -0.5140 27 1 -0.3633 -0.8901 -0.5138 28 1 3.6397 1.8974 1.7096 29 1 4.3883 3.5079 1.5718 30 1 2.1769 2.6812 3.5103 31 1 3.8628 3.0737 3.9274 32 1 2.3892 5.0081 4.3695 33 1 3.5289 5.3800 3.0541 34 1 -1.3187 6.5924 0.4296 35 1 2.7049 5.4552 0.6573 36 1 1.0531 4.8881 0.3012 37 1 4.5449 1.2678 0.0004 38 1 1.7385 -2.8216 -1.0271 39 1 0.8914 -2.5469 0.5142 40 1 2.5847 -3.0956 0.5147 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259834866.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:13 Heat of formation + Delta-G solvation = 13.427841 kcal Electronic energy + Delta-G solvation = -22184.269891 eV Core-core repulsion = 18999.526576 eV Total energy + Delta-G solvation = -3184.743316 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.50244 -40.49674 -38.19370 -35.35600 -34.54326 -33.37864 -32.90729 -31.50672 -28.77688 -27.74439 -26.88182 -26.04764 -23.45172 -23.07309 -21.65665 -20.84073 -19.58401 -18.61135 -17.94968 -17.15321 -16.70170 -16.59081 -16.32996 -15.75598 -15.35829 -15.08018 -14.81199 -14.61274 -14.25274 -14.12452 -14.06401 -13.57843 -13.50741 -13.38087 -13.37890 -13.06766 -12.89023 -12.61490 -12.25857 -12.19400 -11.93088 -11.78886 -11.60230 -11.08909 -10.92536 -10.65623 -10.49876 -10.29906 -9.59340 -9.28902 -8.08524 -6.25123 0.60549 1.25406 1.41221 1.43343 1.45525 1.55149 2.03367 2.41795 2.49473 3.20040 3.52139 3.60593 3.97394 4.00797 4.12613 4.20173 4.35326 4.40869 4.42342 4.55684 4.59143 4.62925 4.68541 4.77753 4.84118 4.85940 4.94910 5.04353 5.11629 5.27761 5.29894 5.37236 5.44677 5.59178 5.70176 5.92689 5.92972 6.02396 6.36335 6.53553 6.75079 6.87695 7.40554 7.45641 8.95465 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027758 B = 0.004884 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.475638 B = 5731.384213 C = 6282.445757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.139 3.861 3 C -0.310 4.310 4 C 0.581 3.419 5 O -0.594 6.594 6 N -0.602 5.602 7 C 0.102 3.898 8 C -0.124 4.124 9 C -0.105 4.105 10 C 0.040 3.960 11 H -0.013 1.013 12 C -0.535 4.535 13 H 0.062 0.938 14 C 0.011 3.989 15 N -0.915 5.915 16 Si 0.957 3.043 17 H -0.261 1.261 18 H -0.283 1.283 19 H -0.282 1.282 20 C 0.127 3.873 21 C 0.084 3.916 22 N -0.312 5.312 23 N -0.359 5.359 24 C 0.085 3.915 25 H 0.094 0.906 26 H 0.067 0.933 27 H 0.111 0.889 28 H 0.100 0.900 29 H 0.083 0.917 30 H 0.046 0.954 31 H 0.101 0.899 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.260 0.740 35 H 0.036 0.964 36 H 0.077 0.923 37 H 0.210 0.790 38 H 0.093 0.907 39 H 0.113 0.887 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.236 -17.134 1.336 18.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.006 3.994 3 C -0.325 4.325 4 C 0.370 3.630 5 O -0.476 6.476 6 N -0.333 5.333 7 C -0.020 4.020 8 C -0.162 4.162 9 C -0.142 4.142 10 C 0.021 3.979 11 H 0.005 0.995 12 C -0.574 4.574 13 H 0.080 0.920 14 C -0.188 4.188 15 N -0.554 5.554 16 Si 0.783 3.217 17 H -0.185 1.185 18 H -0.209 1.209 19 H -0.208 1.208 20 C 0.005 3.995 21 C -0.102 4.102 22 N -0.132 5.132 23 N -0.139 5.139 24 C -0.054 4.054 25 H 0.113 0.887 26 H 0.086 0.914 27 H 0.129 0.871 28 H 0.118 0.882 29 H 0.101 0.899 30 H 0.065 0.935 31 H 0.119 0.881 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.055 0.945 36 H 0.095 0.905 37 H 0.226 0.774 38 H 0.111 0.889 39 H 0.131 0.869 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 7.356 -18.181 0.818 19.630 hybrid contribution -1.136 2.063 -0.228 2.366 sum 6.220 -16.118 0.591 17.287 Atomic orbital electron populations 1.20637 0.85325 1.05079 1.04570 1.21593 0.95504 0.86352 0.95948 1.19974 0.94825 0.92465 1.25209 1.17862 0.80174 0.85010 0.79922 1.90718 1.36363 1.79747 1.40786 1.48356 1.38060 1.12027 1.34840 1.22084 0.89454 1.01575 0.88853 1.21885 1.01584 0.96259 0.96510 1.21519 0.98018 0.95704 0.98992 1.18967 0.92974 0.94827 0.91143 0.99489 1.21551 1.15995 0.95848 1.23966 0.91992 1.25875 0.96194 1.01944 0.94837 1.70095 1.22043 1.36843 1.26390 0.85520 0.78037 0.80247 0.77944 1.18472 1.20914 1.20816 1.21797 0.97955 0.78574 1.01185 1.24217 0.96801 0.91881 0.97293 1.77065 0.97152 1.12900 1.26111 1.48590 1.03163 1.07329 1.54832 1.22375 1.02743 0.74967 1.05282 0.88735 0.91396 0.87069 0.88166 0.89874 0.93536 0.88081 0.92970 0.92312 0.93137 0.94516 0.90512 0.77365 0.88879 0.86861 0.87676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.39 9.70 71.23 0.69 -1.70 16 2 C 0.14 3.95 7.01 42.14 0.30 4.24 16 3 C -0.31 -10.49 5.12 -20.15 -0.10 -10.60 16 4 C 0.58 25.34 7.33 86.67 0.63 25.98 16 5 O -0.59 -31.59 15.57 -4.03 -0.06 -31.65 16 6 N -0.60 -25.37 2.97 -821.95 -2.44 -27.81 16 7 C 0.10 3.16 5.90 86.36 0.51 3.67 16 8 C -0.12 -3.89 6.08 30.67 0.19 -3.70 16 9 C -0.10 -4.12 5.10 30.62 0.16 -3.97 16 10 C 0.04 2.05 2.26 -11.32 -0.03 2.03 16 11 H -0.01 -0.77 8.14 -2.38 -0.02 -0.79 16 12 C -0.54 -29.73 8.56 25.60 0.22 -29.51 16 13 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 14 C 0.01 0.62 5.31 84.66 0.45 1.06 16 15 N -0.91 -55.92 11.41 21.45 0.24 -55.68 16 16 Si 0.96 44.51 29.54 68.60 2.03 46.53 16 17 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 18 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 19 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 20 C 0.13 6.51 5.42 86.51 0.47 6.97 16 21 C 0.08 2.32 9.65 85.65 0.83 3.15 16 22 N -0.31 -8.27 12.50 -56.27 -0.70 -8.97 16 23 N -0.36 -8.34 3.98 -354.32 -1.41 -9.75 16 24 C 0.09 1.00 11.06 127.77 1.41 2.41 16 25 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 26 H 0.07 2.21 7.11 -2.39 -0.02 2.19 16 27 H 0.11 1.75 7.70 -2.38 -0.02 1.73 16 28 H 0.10 2.67 4.55 -2.38 -0.01 2.66 16 29 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 34 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 35 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.08 4.68 5.17 -2.39 -0.01 4.66 16 37 H 0.21 4.53 7.63 -2.91 -0.02 4.51 16 38 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.11 0.78 7.62 -2.38 -0.02 0.77 16 40 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -77.62 323.04 4.41 -73.21 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: 1.03 Total: 14.08 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: 5.72 Total: 0.04 kcal Atomic # 7 Polarization: -97.90 SS G_CDS: -4.31 Total: -102.20 kcal Atomic # 8 Polarization: -31.59 SS G_CDS: -0.06 Total: -31.65 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -77.62 4.41 -73.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259834866.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.633 kcal (2) G-P(sol) polarization free energy of solvation -77.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds